Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0055091: phospholipid homeostasis0.00E+00
2GO:0070328: triglyceride homeostasis0.00E+00
3GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
4GO:0034775: glutathione transmembrane transport0.00E+00
5GO:0080021: response to benzoic acid0.00E+00
6GO:0010046: response to mycotoxin0.00E+00
7GO:0071475: cellular hyperosmotic salinity response0.00E+00
8GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
9GO:0010412: mannan metabolic process0.00E+00
10GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
11GO:0019593: mannitol biosynthetic process0.00E+00
12GO:0071289: cellular response to nickel ion0.00E+00
13GO:0010200: response to chitin3.65E-12
14GO:0009873: ethylene-activated signaling pathway2.49E-07
15GO:0006751: glutathione catabolic process1.62E-05
16GO:0009737: response to abscisic acid3.99E-05
17GO:0009611: response to wounding4.92E-05
18GO:0042344: indole glucosinolate catabolic process6.64E-05
19GO:2000280: regulation of root development1.45E-04
20GO:0052544: defense response by callose deposition in cell wall2.27E-04
21GO:0006355: regulation of transcription, DNA-templated2.57E-04
22GO:0019760: glucosinolate metabolic process3.73E-04
23GO:0009751: response to salicylic acid4.47E-04
24GO:0006970: response to osmotic stress4.78E-04
25GO:0035435: phosphate ion transmembrane transport4.90E-04
26GO:0006952: defense response5.05E-04
27GO:0006351: transcription, DNA-templated5.85E-04
28GO:0051180: vitamin transport6.91E-04
29GO:0009609: response to symbiotic bacterium6.91E-04
30GO:0030974: thiamine pyrophosphate transport6.91E-04
31GO:1902265: abscisic acid homeostasis6.91E-04
32GO:0009865: pollen tube adhesion6.91E-04
33GO:0046938: phytochelatin biosynthetic process6.91E-04
34GO:0050691: regulation of defense response to virus by host6.91E-04
35GO:0006680: glucosylceramide catabolic process6.91E-04
36GO:0090421: embryonic meristem initiation6.91E-04
37GO:0031408: oxylipin biosynthetic process7.67E-04
38GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.29E-04
39GO:0006811: ion transport8.70E-04
40GO:0009819: drought recovery1.03E-03
41GO:0009415: response to water1.03E-03
42GO:2000070: regulation of response to water deprivation1.03E-03
43GO:0042631: cellular response to water deprivation1.31E-03
44GO:0042335: cuticle development1.31E-03
45GO:0009409: response to cold1.33E-03
46GO:0045489: pectin biosynthetic process1.44E-03
47GO:0015786: UDP-glucose transport1.49E-03
48GO:1901679: nucleotide transmembrane transport1.49E-03
49GO:2000030: regulation of response to red or far red light1.49E-03
50GO:0006898: receptor-mediated endocytosis1.49E-03
51GO:0015893: drug transport1.49E-03
52GO:0010507: negative regulation of autophagy1.49E-03
53GO:0015709: thiosulfate transport1.49E-03
54GO:0071422: succinate transmembrane transport1.49E-03
55GO:0031407: oxylipin metabolic process1.49E-03
56GO:0010289: homogalacturonan biosynthetic process1.49E-03
57GO:0055088: lipid homeostasis1.49E-03
58GO:0098656: anion transmembrane transport1.50E-03
59GO:0010193: response to ozone1.89E-03
60GO:0006633: fatty acid biosynthetic process2.16E-03
61GO:0042538: hyperosmotic salinity response2.25E-03
62GO:0000038: very long-chain fatty acid metabolic process2.41E-03
63GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.46E-03
64GO:0080168: abscisic acid transport2.46E-03
65GO:0044210: 'de novo' CTP biosynthetic process2.46E-03
66GO:0016045: detection of bacterium2.46E-03
67GO:0010359: regulation of anion channel activity2.46E-03
68GO:0010288: response to lead ion2.46E-03
69GO:0080121: AMP transport2.46E-03
70GO:0046786: viral replication complex formation and maintenance2.46E-03
71GO:0090630: activation of GTPase activity2.46E-03
72GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.46E-03
73GO:0015783: GDP-fucose transport2.46E-03
74GO:0010325: raffinose family oligosaccharide biosynthetic process2.46E-03
75GO:0018107: peptidyl-threonine phosphorylation3.14E-03
76GO:0015729: oxaloacetate transport3.58E-03
77GO:0033014: tetrapyrrole biosynthetic process3.58E-03
78GO:0072334: UDP-galactose transmembrane transport3.58E-03
79GO:0030100: regulation of endocytosis3.58E-03
80GO:0015700: arsenite transport3.58E-03
81GO:0080024: indolebutyric acid metabolic process3.58E-03
82GO:0055089: fatty acid homeostasis3.58E-03
83GO:0010371: regulation of gibberellin biosynthetic process3.58E-03
84GO:0070301: cellular response to hydrogen peroxide3.58E-03
85GO:0009414: response to water deprivation3.63E-03
86GO:0010025: wax biosynthetic process4.45E-03
87GO:0071585: detoxification of cadmium ion4.83E-03
88GO:0045727: positive regulation of translation4.83E-03
89GO:0046355: mannan catabolic process4.83E-03
90GO:0006536: glutamate metabolic process4.83E-03
91GO:0022622: root system development4.83E-03
92GO:0042991: transcription factor import into nucleus4.83E-03
93GO:1902347: response to strigolactone4.83E-03
94GO:0034440: lipid oxidation4.83E-03
95GO:0015867: ATP transport4.83E-03
96GO:0009694: jasmonic acid metabolic process4.83E-03
97GO:0009687: abscisic acid metabolic process4.83E-03
98GO:0046345: abscisic acid catabolic process4.83E-03
99GO:0051365: cellular response to potassium ion starvation4.83E-03
100GO:0009863: salicylic acid mediated signaling pathway4.94E-03
101GO:2000377: regulation of reactive oxygen species metabolic process4.94E-03
102GO:0009631: cold acclimation5.15E-03
103GO:0009695: jasmonic acid biosynthetic process5.46E-03
104GO:0032957: inositol trisphosphate metabolic process6.21E-03
105GO:0009697: salicylic acid biosynthetic process6.21E-03
106GO:0009247: glycolipid biosynthetic process6.21E-03
107GO:0070897: DNA-templated transcriptional preinitiation complex assembly6.21E-03
108GO:0006873: cellular ion homeostasis6.21E-03
109GO:0048359: mucilage metabolic process involved in seed coat development6.21E-03
110GO:0071423: malate transmembrane transport6.21E-03
111GO:0009823: cytokinin catabolic process6.21E-03
112GO:0006656: phosphatidylcholine biosynthetic process6.21E-03
113GO:0045487: gibberellin catabolic process6.21E-03
114GO:0048497: maintenance of floral organ identity6.21E-03
115GO:0006665: sphingolipid metabolic process6.21E-03
116GO:0006839: mitochondrial transport6.85E-03
117GO:0001944: vasculature development7.20E-03
118GO:0006468: protein phosphorylation7.62E-03
119GO:0047484: regulation of response to osmotic stress7.71E-03
120GO:1900425: negative regulation of defense response to bacterium7.71E-03
121GO:0010337: regulation of salicylic acid metabolic process7.71E-03
122GO:0015866: ADP transport7.71E-03
123GO:0009790: embryo development7.72E-03
124GO:0080167: response to karrikin8.07E-03
125GO:0070417: cellular response to cold8.51E-03
126GO:1901001: negative regulation of response to salt stress9.33E-03
127GO:0045926: negative regulation of growth9.33E-03
128GO:0010016: shoot system morphogenesis9.33E-03
129GO:0098655: cation transmembrane transport9.33E-03
130GO:2000033: regulation of seed dormancy process9.33E-03
131GO:0009861: jasmonic acid and ethylene-dependent systemic resistance9.33E-03
132GO:0010555: response to mannitol9.33E-03
133GO:0080086: stamen filament development9.33E-03
134GO:0048868: pollen tube development9.94E-03
135GO:0045490: pectin catabolic process9.97E-03
136GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway1.11E-02
137GO:0030497: fatty acid elongation1.11E-02
138GO:0008272: sulfate transport1.11E-02
139GO:1902074: response to salt1.11E-02
140GO:0010103: stomatal complex morphogenesis1.11E-02
141GO:0032880: regulation of protein localization1.11E-02
142GO:0006401: RNA catabolic process1.11E-02
143GO:0006955: immune response1.11E-02
144GO:0045892: negative regulation of transcription, DNA-templated1.14E-02
145GO:0006470: protein dephosphorylation1.22E-02
146GO:0000302: response to reactive oxygen species1.23E-02
147GO:0006891: intra-Golgi vesicle-mediated transport1.23E-02
148GO:0009061: anaerobic respiration1.29E-02
149GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.29E-02
150GO:0009690: cytokinin metabolic process1.29E-02
151GO:0019375: galactolipid biosynthetic process1.29E-02
152GO:1900150: regulation of defense response to fungus1.29E-02
153GO:0007155: cell adhesion1.29E-02
154GO:0009880: embryonic pattern specification1.48E-02
155GO:0009827: plant-type cell wall modification1.48E-02
156GO:0009639: response to red or far red light1.50E-02
157GO:0048367: shoot system development1.52E-02
158GO:0090305: nucleic acid phosphodiester bond hydrolysis1.69E-02
159GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.69E-02
160GO:0006098: pentose-phosphate shunt1.69E-02
161GO:0006783: heme biosynthetic process1.69E-02
162GO:0001708: cell fate specification1.69E-02
163GO:0015780: nucleotide-sugar transport1.69E-02
164GO:0010345: suberin biosynthetic process1.69E-02
165GO:0046685: response to arsenic-containing substance1.69E-02
166GO:0042545: cell wall modification1.78E-02
167GO:0009624: response to nematode1.85E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.89E-02
169GO:0010029: regulation of seed germination1.89E-02
170GO:0006779: porphyrin-containing compound biosynthetic process1.90E-02
171GO:0042761: very long-chain fatty acid biosynthetic process1.90E-02
172GO:0048268: clathrin coat assembly1.90E-02
173GO:0007346: regulation of mitotic cell cycle1.90E-02
174GO:0018105: peptidyl-serine phosphorylation1.92E-02
175GO:0009627: systemic acquired resistance2.00E-02
176GO:0055062: phosphate ion homeostasis2.12E-02
177GO:0006782: protoporphyrinogen IX biosynthetic process2.12E-02
178GO:0019538: protein metabolic process2.12E-02
179GO:0009641: shade avoidance2.12E-02
180GO:0009698: phenylpropanoid metabolic process2.35E-02
181GO:0009682: induced systemic resistance2.35E-02
182GO:0008285: negative regulation of cell proliferation2.35E-02
183GO:0030148: sphingolipid biosynthetic process2.35E-02
184GO:0010015: root morphogenesis2.35E-02
185GO:0007165: signal transduction2.38E-02
186GO:0048767: root hair elongation2.46E-02
187GO:0006979: response to oxidative stress2.49E-02
188GO:0010105: negative regulation of ethylene-activated signaling pathway2.59E-02
189GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.59E-02
190GO:0071365: cellular response to auxin stimulus2.59E-02
191GO:0000266: mitochondrial fission2.59E-02
192GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.80E-02
193GO:0030048: actin filament-based movement2.84E-02
194GO:2000012: regulation of auxin polar transport2.84E-02
195GO:0050826: response to freezing2.84E-02
196GO:0055046: microgametogenesis2.84E-02
197GO:0009725: response to hormone2.84E-02
198GO:0005986: sucrose biosynthetic process2.84E-02
199GO:0016051: carbohydrate biosynthetic process2.97E-02
200GO:0048467: gynoecium development3.10E-02
201GO:0002237: response to molecule of bacterial origin3.10E-02
202GO:0010167: response to nitrate3.36E-02
203GO:0009901: anther dehiscence3.36E-02
204GO:0071732: cellular response to nitric oxide3.36E-02
205GO:0010030: positive regulation of seed germination3.36E-02
206GO:0070588: calcium ion transmembrane transport3.36E-02
207GO:0009969: xyloglucan biosynthetic process3.36E-02
208GO:0006631: fatty acid metabolic process3.53E-02
209GO:0006897: endocytosis3.53E-02
210GO:0006636: unsaturated fatty acid biosynthetic process3.63E-02
211GO:0009833: plant-type primary cell wall biogenesis3.63E-02
212GO:0010150: leaf senescence3.67E-02
213GO:0009640: photomorphogenesis3.83E-02
214GO:0051707: response to other organism3.83E-02
215GO:0010187: negative regulation of seed germination3.91E-02
216GO:0009269: response to desiccation4.48E-02
217GO:0051321: meiotic cell cycle4.48E-02
218GO:0035556: intracellular signal transduction4.55E-02
219GO:0010468: regulation of gene expression4.56E-02
220GO:0009617: response to bacterium4.56E-02
221GO:0030433: ubiquitin-dependent ERAD pathway4.78E-02
222GO:0031348: negative regulation of defense response4.78E-02
223GO:0080092: regulation of pollen tube growth4.78E-02
224GO:0030245: cellulose catabolic process4.78E-02
225GO:0048364: root development4.97E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0004698: calcium-dependent protein kinase C activity0.00E+00
3GO:0070566: adenylyltransferase activity0.00E+00
4GO:0017048: Rho GTPase binding0.00E+00
5GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
6GO:0080123: jasmonate-amino synthetase activity0.00E+00
7GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
8GO:0009922: fatty acid elongase activity7.27E-08
9GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.42E-06
10GO:0016629: 12-oxophytodienoate reductase activity2.04E-05
11GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.17E-05
12GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.17E-05
13GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.17E-05
14GO:0003840: gamma-glutamyltransferase activity6.64E-05
15GO:0036374: glutathione hydrolase activity6.64E-05
16GO:0003883: CTP synthase activity1.38E-04
17GO:0043565: sequence-specific DNA binding1.46E-04
18GO:0003700: transcription factor activity, sequence-specific DNA binding1.52E-04
19GO:0044212: transcription regulatory region DNA binding1.80E-04
20GO:0090422: thiamine pyrophosphate transporter activity6.91E-04
21GO:0004105: choline-phosphate cytidylyltransferase activity6.91E-04
22GO:0046870: cadmium ion binding6.91E-04
23GO:0052631: sphingolipid delta-8 desaturase activity6.91E-04
24GO:0052638: indole-3-butyrate beta-glucosyltransferase activity6.91E-04
25GO:0004348: glucosylceramidase activity6.91E-04
26GO:0071992: phytochelatin transmembrane transporter activity6.91E-04
27GO:0015446: ATPase-coupled arsenite transmembrane transporter activity6.91E-04
28GO:0090440: abscisic acid transporter activity6.91E-04
29GO:1901677: phosphate transmembrane transporter activity1.49E-03
30GO:0015117: thiosulfate transmembrane transporter activity1.49E-03
31GO:0017022: myosin binding1.49E-03
32GO:0004103: choline kinase activity1.49E-03
33GO:0008883: glutamyl-tRNA reductase activity1.49E-03
34GO:0001047: core promoter binding1.49E-03
35GO:0042389: omega-3 fatty acid desaturase activity1.49E-03
36GO:0017040: ceramidase activity1.49E-03
37GO:0003839: gamma-glutamylcyclotransferase activity1.49E-03
38GO:0003958: NADPH-hemoprotein reductase activity1.49E-03
39GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.49E-03
40GO:0010181: FMN binding1.58E-03
41GO:0015297: antiporter activity2.36E-03
42GO:0047274: galactinol-sucrose galactosyltransferase activity2.46E-03
43GO:0070330: aromatase activity2.46E-03
44GO:0005310: dicarboxylic acid transmembrane transporter activity2.46E-03
45GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.46E-03
46GO:0015141: succinate transmembrane transporter activity2.46E-03
47GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity2.46E-03
48GO:0004383: guanylate cyclase activity2.46E-03
49GO:0016165: linoleate 13S-lipoxygenase activity2.46E-03
50GO:0005457: GDP-fucose transmembrane transporter activity2.46E-03
51GO:0047325: inositol tetrakisphosphate 1-kinase activity2.46E-03
52GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.61E-03
53GO:0004674: protein serine/threonine kinase activity3.10E-03
54GO:0019888: protein phosphatase regulator activity3.14E-03
55GO:0008083: growth factor activity3.55E-03
56GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity3.58E-03
57GO:0015131: oxaloacetate transmembrane transporter activity3.58E-03
58GO:0001653: peptide receptor activity3.58E-03
59GO:0033843: xyloglucan 6-xylosyltransferase activity3.58E-03
60GO:0035250: UDP-galactosyltransferase activity3.58E-03
61GO:0005460: UDP-glucose transmembrane transporter activity3.58E-03
62GO:0005432: calcium:sodium antiporter activity3.58E-03
63GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity3.58E-03
64GO:0004351: glutamate decarboxylase activity3.58E-03
65GO:0005096: GTPase activator activity4.55E-03
66GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.83E-03
67GO:0016985: mannan endo-1,4-beta-mannosidase activity4.83E-03
68GO:0003677: DNA binding5.65E-03
69GO:0016758: transferase activity, transferring hexosyl groups5.85E-03
70GO:0005459: UDP-galactose transmembrane transporter activity6.21E-03
71GO:0019139: cytokinin dehydrogenase activity6.21E-03
72GO:0004623: phospholipase A2 activity6.21E-03
73GO:0018685: alkane 1-monooxygenase activity6.21E-03
74GO:0080122: AMP transmembrane transporter activity6.21E-03
75GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.21E-03
76GO:0010294: abscisic acid glucosyltransferase activity6.21E-03
77GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity6.59E-03
78GO:0016301: kinase activity6.94E-03
79GO:0019137: thioglucosidase activity7.71E-03
80GO:0008514: organic anion transmembrane transporter activity7.84E-03
81GO:0005347: ATP transmembrane transporter activity9.33E-03
82GO:0015217: ADP transmembrane transporter activity9.33E-03
83GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.96E-03
84GO:0016621: cinnamoyl-CoA reductase activity1.11E-02
85GO:0019899: enzyme binding1.11E-02
86GO:0015140: malate transmembrane transporter activity1.11E-02
87GO:0004143: diacylglycerol kinase activity1.11E-02
88GO:0015491: cation:cation antiporter activity1.29E-02
89GO:0004722: protein serine/threonine phosphatase activity1.30E-02
90GO:0045330: aspartyl esterase activity1.34E-02
91GO:0008308: voltage-gated anion channel activity1.48E-02
92GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.48E-02
93GO:0080044: quercetin 7-O-glucosyltransferase activity1.64E-02
94GO:0080043: quercetin 3-O-glucosyltransferase activity1.64E-02
95GO:0000989: transcription factor activity, transcription factor binding1.69E-02
96GO:0030599: pectinesterase activity1.71E-02
97GO:0102483: scopolin beta-glucosidase activity2.11E-02
98GO:0004004: ATP-dependent RNA helicase activity2.11E-02
99GO:0004864: protein phosphatase inhibitor activity2.12E-02
100GO:0004713: protein tyrosine kinase activity2.12E-02
101GO:0005545: 1-phosphatidylinositol binding2.12E-02
102GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.22E-02
103GO:0046872: metal ion binding2.38E-02
104GO:0015116: sulfate transmembrane transporter activity2.59E-02
105GO:0015114: phosphate ion transmembrane transporter activity2.84E-02
106GO:0000175: 3'-5'-exoribonuclease activity2.84E-02
107GO:0005315: inorganic phosphate transmembrane transporter activity2.84E-02
108GO:0005262: calcium channel activity2.84E-02
109GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.10E-02
110GO:0003774: motor activity3.10E-02
111GO:0008422: beta-glucosidase activity3.24E-02
112GO:0017025: TBP-class protein binding3.36E-02
113GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.36E-02
114GO:0008146: sulfotransferase activity3.36E-02
115GO:0004857: enzyme inhibitor activity3.91E-02
116GO:0051087: chaperone binding4.19E-02
117GO:0008194: UDP-glycosyltransferase activity4.21E-02
118GO:0035251: UDP-glucosyltransferase activity4.48E-02
119GO:0004540: ribonuclease activity4.48E-02
120GO:0004707: MAP kinase activity4.48E-02
121GO:0004842: ubiquitin-protein transferase activity4.68E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle6.91E-04
2GO:0046658: anchored component of plasma membrane1.11E-03
3GO:0031357: integral component of chloroplast inner membrane1.49E-03
4GO:0042170: plastid membrane1.49E-03
5GO:0030133: transport vesicle1.49E-03
6GO:0000159: protein phosphatase type 2A complex2.41E-03
7GO:0070062: extracellular exosome3.58E-03
8GO:0045177: apical part of cell3.58E-03
9GO:0000178: exosome (RNase complex)6.21E-03
10GO:0000793: condensed chromosome7.71E-03
11GO:0031463: Cul3-RING ubiquitin ligase complex7.71E-03
12GO:0005768: endosome7.74E-03
13GO:0000794: condensed nuclear chromosome1.11E-02
14GO:0031225: anchored component of membrane1.42E-02
15GO:0016607: nuclear speck1.52E-02
16GO:0009505: plant-type cell wall1.66E-02
17GO:0005634: nucleus1.77E-02
18GO:0005622: intracellular1.87E-02
19GO:0016604: nuclear body1.90E-02
20GO:0005938: cell cortex2.84E-02
21GO:0005795: Golgi stack3.36E-02
22GO:0005802: trans-Golgi network3.76E-02
23GO:0005743: mitochondrial inner membrane4.22E-02
24GO:0005905: clathrin-coated pit4.48E-02
25GO:0000139: Golgi membrane4.49E-02
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Gene type



Gene DE type