co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.47E-07
9	GO:0006000: fructose metabolic process	9.50E-07
10	GO:0010600: regulation of auxin biosynthetic process	4.38E-06
11	GO:0010021: amylopectin biosynthetic process	4.38E-06
12	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.63E-05
13	GO:0010928: regulation of auxin mediated signaling pathway	2.95E-05
14	GO:0006002: fructose 6-phosphate metabolic process	3.77E-05
15	GO:0032544: plastid translation	3.77E-05
16	GO:0031998: regulation of fatty acid beta-oxidation	6.58E-05
17	GO:0000023: maltose metabolic process	6.58E-05
18	GO:0006431: methionyl-tRNA aminoacylation	6.58E-05
19	GO:0000025: maltose catabolic process	6.58E-05
20	GO:0005980: glycogen catabolic process	6.58E-05
21	GO:0080093: regulation of photorespiration	6.58E-05
22	GO:0009773: photosynthetic electron transport in photosystem I	8.19E-05
23	GO:0005983: starch catabolic process	9.59E-05
24	GO:0006094: gluconeogenesis	1.11E-04
25	GO:0005986: sucrose biosynthetic process	1.11E-04
26	GO:0009266: response to temperature stimulus	1.27E-04
27	GO:0051262: protein tetramerization	1.59E-04
28	GO:0005976: polysaccharide metabolic process	1.59E-04
29	GO:1901959: positive regulation of cutin biosynthetic process	1.59E-04
30	GO:0015979: photosynthesis	1.85E-04
31	GO:0010017: red or far-red light signaling pathway	2.45E-04
32	GO:0048281: inflorescence morphogenesis	2.69E-04
33	GO:1904278: positive regulation of wax biosynthetic process	2.69E-04
34	GO:0006518: peptide metabolic process	2.69E-04
35	GO:0010623: programmed cell death involved in cell development	2.69E-04
36	GO:0035436: triose phosphate transmembrane transport	2.69E-04
37	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.90E-04
38	GO:1902358: sulfate transmembrane transport	3.90E-04
39	GO:0010148: transpiration	3.90E-04
40	GO:0010731: protein glutathionylation	3.90E-04
41	GO:0019252: starch biosynthetic process	4.26E-04
42	GO:0010023: proanthocyanidin biosynthetic process	5.20E-04
43	GO:0045723: positive regulation of fatty acid biosynthetic process	5.20E-04
44	GO:0010508: positive regulation of autophagy	5.20E-04
45	GO:0015713: phosphoglycerate transport	5.20E-04
46	GO:0009735: response to cytokinin	6.03E-04
47	GO:0006097: glyoxylate cycle	6.60E-04
48	GO:0015995: chlorophyll biosynthetic process	7.62E-04
49	GO:0000470: maturation of LSU-rRNA	8.06E-04
50	GO:0009913: epidermal cell differentiation	8.06E-04
51	GO:0009643: photosynthetic acclimation	8.06E-04
52	GO:0009955: adaxial/abaxial pattern specification	9.59E-04
53	GO:1901259: chloroplast rRNA processing	9.59E-04
54	GO:0010103: stomatal complex morphogenesis	1.12E-03
55	GO:0010161: red light signaling pathway	1.12E-03
56	GO:0008272: sulfate transport	1.12E-03
57	GO:0070370: cellular heat acclimation	1.12E-03
58	GO:0009231: riboflavin biosynthetic process	1.29E-03
59	GO:0005978: glycogen biosynthetic process	1.29E-03
60	GO:0009704: de-etiolation	1.29E-03
61	GO:0001558: regulation of cell growth	1.47E-03
62	GO:0006783: heme biosynthetic process	1.65E-03
63	GO:0009585: red, far-red light phototransduction	1.79E-03
64	GO:0005982: starch metabolic process	1.85E-03
65	GO:0042761: very long-chain fatty acid biosynthetic process	1.85E-03
66	GO:0031627: telomeric loop formation	2.05E-03
67	GO:0006782: protoporphyrinogen IX biosynthetic process	2.05E-03
68	GO:0048829: root cap development	2.05E-03
69	GO:0006415: translational termination	2.26E-03
70	GO:0009750: response to fructose	2.26E-03
71	GO:0045037: protein import into chloroplast stroma	2.48E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	2.70E-03
73	GO:0010102: lateral root morphogenesis	2.70E-03
74	GO:0010628: positive regulation of gene expression	2.70E-03
75	GO:0006108: malate metabolic process	2.70E-03
76	GO:0009887: animal organ morphogenesis	2.93E-03
77	GO:0019253: reductive pentose-phosphate cycle	2.93E-03
78	GO:0009409: response to cold	3.15E-03
79	GO:0005985: sucrose metabolic process	3.16E-03
80	GO:0010025: wax biosynthetic process	3.40E-03
81	GO:0009944: polarity specification of adaxial/abaxial axis	3.65E-03
82	GO:0051302: regulation of cell division	3.90E-03
83	GO:0006418: tRNA aminoacylation for protein translation	3.90E-03
84	GO:0007017: microtubule-based process	3.90E-03
85	GO:0019915: lipid storage	4.17E-03
86	GO:0061077: chaperone-mediated protein folding	4.17E-03
87	GO:0007623: circadian rhythm	4.34E-03
88	GO:0009693: ethylene biosynthetic process	4.70E-03
89	GO:0009686: gibberellin biosynthetic process	4.70E-03
90	GO:0001944: vasculature development	4.70E-03
91	GO:0010089: xylem development	4.98E-03
92	GO:0042335: cuticle development	5.55E-03
93	GO:0048825: cotyledon development	6.45E-03
94	GO:0000302: response to reactive oxygen species	6.76E-03
95	GO:0006970: response to osmotic stress	7.21E-03
96	GO:0010027: thylakoid membrane organization	8.74E-03
97	GO:0009414: response to water deprivation	9.37E-03
98	GO:0016311: dephosphorylation	1.02E-02
99	GO:0048481: plant ovule development	1.05E-02
100	GO:0000160: phosphorelay signal transduction system	1.09E-02
101	GO:0009834: plant-type secondary cell wall biogenesis	1.13E-02
102	GO:0006099: tricarboxylic acid cycle	1.28E-02
103	GO:0034599: cellular response to oxidative stress	1.28E-02
104	GO:0009644: response to high light intensity	1.57E-02
105	GO:0009965: leaf morphogenesis	1.62E-02
106	GO:0006855: drug transmembrane transport	1.66E-02
107	GO:0046686: response to cadmium ion	1.70E-02
108	GO:0009664: plant-type cell wall organization	1.75E-02
109	GO:0009740: gibberellic acid mediated signaling pathway	2.26E-02
110	GO:0009845: seed germination	2.93E-02
111	GO:0042744: hydrogen peroxide catabolic process	3.04E-02
112	GO:0040008: regulation of growth	3.37E-02
113	GO:0009739: response to gibberellin	3.78E-02
114	GO:0009651: response to salt stress	4.41E-02
115	GO:0006979: response to oxidative stress	4.44E-02
116	GO:0009658: chloroplast organization	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.47E-07
3	GO:0005227: calcium activated cation channel activity	6.58E-05
4	GO:0008184: glycogen phosphorylase activity	6.58E-05
5	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	6.58E-05
6	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	6.58E-05
7	GO:0004853: uroporphyrinogen decarboxylase activity	6.58E-05
8	GO:0004134: 4-alpha-glucanotransferase activity	6.58E-05
9	GO:0004645: phosphorylase activity	6.58E-05
10	GO:0004825: methionine-tRNA ligase activity	6.58E-05
11	GO:0010297: heteropolysaccharide binding	1.59E-04
12	GO:0033201: alpha-1,4-glucan synthase activity	1.59E-04
13	GO:0008967: phosphoglycolate phosphatase activity	1.59E-04
14	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.59E-04
15	GO:0071917: triose-phosphate transmembrane transporter activity	2.69E-04
16	GO:0043169: cation binding	2.69E-04
17	GO:0004373: glycogen (starch) synthase activity	2.69E-04
18	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.69E-04
19	GO:0016851: magnesium chelatase activity	3.90E-04
20	GO:0016149: translation release factor activity, codon specific	3.90E-04
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.20E-04
22	GO:0019199: transmembrane receptor protein kinase activity	5.20E-04
23	GO:0009011: starch synthase activity	5.20E-04
24	GO:0042277: peptide binding	5.20E-04
25	GO:0015120: phosphoglycerate transmembrane transporter activity	5.20E-04
26	GO:2001070: starch binding	8.06E-04
27	GO:0004130: cytochrome-c peroxidase activity	8.06E-04
28	GO:0016615: malate dehydrogenase activity	8.06E-04
29	GO:0030060: L-malate dehydrogenase activity	9.59E-04
30	GO:0005261: cation channel activity	9.59E-04
31	GO:0004602: glutathione peroxidase activity	9.59E-04
32	GO:0008271: secondary active sulfate transmembrane transporter activity	1.47E-03
33	GO:0003747: translation release factor activity	1.65E-03
34	GO:0044183: protein binding involved in protein folding	2.26E-03
35	GO:0003691: double-stranded telomeric DNA binding	2.26E-03
36	GO:0015116: sulfate transmembrane transporter activity	2.48E-03
37	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.48E-03
38	GO:0019843: rRNA binding	3.15E-03
39	GO:0004812: aminoacyl-tRNA ligase activity	5.26E-03
40	GO:0048038: quinone binding	6.76E-03
41	GO:0000156: phosphorelay response regulator activity	7.40E-03
42	GO:0005200: structural constituent of cytoskeleton	8.06E-03
43	GO:0004222: metalloendopeptidase activity	1.13E-02
44	GO:0003924: GTPase activity	1.23E-02
45	GO:0004364: glutathione transferase activity	1.45E-02
46	GO:0015293: symporter activity	1.62E-02
47	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.12E-02
48	GO:0003735: structural constituent of ribosome	2.31E-02
49	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.88E-02
50	GO:0004252: serine-type endopeptidase activity	2.99E-02
51	GO:0030170: pyridoxal phosphate binding	2.99E-02
52	GO:0008565: protein transporter activity	3.15E-02
53	GO:0015297: antiporter activity	3.37E-02
54	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.55E-02
55	GO:0005525: GTP binding	3.59E-02
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.13E-02
57	GO:0000287: magnesium ion binding	4.69E-02
58	GO:0004601: peroxidase activity	4.75E-02
59	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-02
60	GO:0003677: DNA binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	2.38E-17
4	GO:0009534: chloroplast thylakoid	1.01E-16
5	GO:0009570: chloroplast stroma	4.91E-12
6	GO:0009535: chloroplast thylakoid membrane	6.28E-08
7	GO:0009941: chloroplast envelope	1.84E-06
8	GO:0009501: amyloplast	2.95E-05
9	GO:0009579: thylakoid	1.42E-04
10	GO:0010007: magnesium chelatase complex	2.69E-04
11	GO:0010287: plastoglobule	3.24E-04
12	GO:0031977: thylakoid lumen	1.24E-03
13	GO:0009538: photosystem I reaction center	1.29E-03
14	GO:0000783: nuclear telomere cap complex	1.47E-03
15	GO:0005763: mitochondrial small ribosomal subunit	1.65E-03
16	GO:0042644: chloroplast nucleoid	1.65E-03
17	GO:0045298: tubulin complex	1.65E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.65E-03
19	GO:0009508: plastid chromosome	2.70E-03
20	GO:0009536: plastid	2.71E-03
21	GO:0009543: chloroplast thylakoid lumen	3.15E-03
22	GO:0042651: thylakoid membrane	3.90E-03
23	GO:0010319: stromule	8.06E-03
24	GO:0009295: nucleoid	8.06E-03
25	GO:0005840: ribosome	1.03E-02
26	GO:0009706: chloroplast inner membrane	2.36E-02
27	GO:0005623: cell	2.82E-02
28	GO:0005622: intracellular	3.87E-02
29	GO:0048046: apoplast	4.86E-02