GO Enrichment Analysis of Co-expressed Genes with
AT3G55605
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 2 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 3 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 7 | GO:0006412: translation | 6.20E-58 |
| 8 | GO:0042254: ribosome biogenesis | 5.67E-12 |
| 9 | GO:0006626: protein targeting to mitochondrion | 2.89E-09 |
| 10 | GO:0006364: rRNA processing | 2.98E-07 |
| 11 | GO:0002181: cytoplasmic translation | 5.87E-06 |
| 12 | GO:0045039: protein import into mitochondrial inner membrane | 5.87E-06 |
| 13 | GO:0030150: protein import into mitochondrial matrix | 3.69E-05 |
| 14 | GO:0031167: rRNA methylation | 4.05E-05 |
| 15 | GO:0000470: maturation of LSU-rRNA | 6.00E-05 |
| 16 | GO:0009955: adaxial/abaxial pattern specification | 8.36E-05 |
| 17 | GO:0008033: tRNA processing | 9.65E-05 |
| 18 | GO:0001510: RNA methylation | 1.78E-04 |
| 19 | GO:0030490: maturation of SSU-rRNA | 1.82E-04 |
| 20 | GO:0009735: response to cytokinin | 2.45E-04 |
| 21 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 4.10E-04 |
| 22 | GO:0048569: post-embryonic animal organ development | 4.10E-04 |
| 23 | GO:0009967: positive regulation of signal transduction | 4.10E-04 |
| 24 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.10E-04 |
| 25 | GO:0000027: ribosomal large subunit assembly | 7.17E-04 |
| 26 | GO:0007005: mitochondrion organization | 9.43E-04 |
| 27 | GO:0032981: mitochondrial respiratory chain complex I assembly | 9.55E-04 |
| 28 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 9.55E-04 |
| 29 | GO:0006164: purine nucleotide biosynthetic process | 9.55E-04 |
| 30 | GO:0009855: determination of bilateral symmetry | 9.55E-04 |
| 31 | GO:0000460: maturation of 5.8S rRNA | 1.27E-03 |
| 32 | GO:0042274: ribosomal small subunit biogenesis | 1.27E-03 |
| 33 | GO:0042273: ribosomal large subunit biogenesis | 1.27E-03 |
| 34 | GO:0051205: protein insertion into membrane | 1.27E-03 |
| 35 | GO:0010197: polar nucleus fusion | 1.39E-03 |
| 36 | GO:0006461: protein complex assembly | 1.61E-03 |
| 37 | GO:0080156: mitochondrial mRNA modification | 1.71E-03 |
| 38 | GO:0016554: cytidine to uridine editing | 1.98E-03 |
| 39 | GO:0000741: karyogamy | 1.98E-03 |
| 40 | GO:0006458: 'de novo' protein folding | 2.38E-03 |
| 41 | GO:0000245: spliceosomal complex assembly | 2.38E-03 |
| 42 | GO:0000054: ribosomal subunit export from nucleus | 2.38E-03 |
| 43 | GO:0080186: developmental vegetative growth | 2.80E-03 |
| 44 | GO:0000028: ribosomal small subunit assembly | 3.24E-03 |
| 45 | GO:0001558: regulation of cell growth | 3.71E-03 |
| 46 | GO:0006189: 'de novo' IMP biosynthetic process | 4.20E-03 |
| 47 | GO:0007338: single fertilization | 4.20E-03 |
| 48 | GO:0048507: meristem development | 4.20E-03 |
| 49 | GO:0000387: spliceosomal snRNP assembly | 4.71E-03 |
| 50 | GO:0010162: seed dormancy process | 5.24E-03 |
| 51 | GO:0006913: nucleocytoplasmic transport | 5.79E-03 |
| 52 | GO:0006820: anion transport | 6.35E-03 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 6.44E-03 |
| 54 | GO:0090351: seedling development | 8.18E-03 |
| 55 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.48E-03 |
| 56 | GO:0009553: embryo sac development | 9.71E-03 |
| 57 | GO:0051302: regulation of cell division | 1.02E-02 |
| 58 | GO:0006414: translational elongation | 1.04E-02 |
| 59 | GO:0061077: chaperone-mediated protein folding | 1.09E-02 |
| 60 | GO:0000398: mRNA splicing, via spliceosome | 1.16E-02 |
| 61 | GO:0009294: DNA mediated transformation | 1.23E-02 |
| 62 | GO:0040007: growth | 1.23E-02 |
| 63 | GO:0071215: cellular response to abscisic acid stimulus | 1.23E-02 |
| 64 | GO:0000413: protein peptidyl-prolyl isomerization | 1.46E-02 |
| 65 | GO:0006606: protein import into nucleus | 1.46E-02 |
| 66 | GO:0009960: endosperm development | 1.54E-02 |
| 67 | GO:0006413: translational initiation | 1.62E-02 |
| 68 | GO:0006635: fatty acid beta-oxidation | 1.79E-02 |
| 69 | GO:0009567: double fertilization forming a zygote and endosperm | 2.05E-02 |
| 70 | GO:0016049: cell growth | 2.71E-02 |
| 71 | GO:0006811: ion transport | 3.01E-02 |
| 72 | GO:0048527: lateral root development | 3.11E-02 |
| 73 | GO:0006099: tricarboxylic acid cycle | 3.43E-02 |
| 74 | GO:0008283: cell proliferation | 3.98E-02 |
| 75 | GO:0000154: rRNA modification | 4.32E-02 |
| 76 | GO:0009965: leaf morphogenesis | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 6.13E-71 |
| 4 | GO:0003729: mRNA binding | 2.32E-14 |
| 5 | GO:0019843: rRNA binding | 7.16E-14 |
| 6 | GO:0030515: snoRNA binding | 8.93E-09 |
| 7 | GO:0003723: RNA binding | 8.24E-08 |
| 8 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.96E-07 |
| 9 | GO:0008649: rRNA methyltransferase activity | 5.87E-06 |
| 10 | GO:0001055: RNA polymerase II activity | 6.38E-06 |
| 11 | GO:0001054: RNA polymerase I activity | 1.10E-05 |
| 12 | GO:0001056: RNA polymerase III activity | 1.40E-05 |
| 13 | GO:0003746: translation elongation factor activity | 3.88E-05 |
| 14 | GO:0000166: nucleotide binding | 4.98E-05 |
| 15 | GO:0048037: cofactor binding | 1.82E-04 |
| 16 | GO:0042134: rRNA primary transcript binding | 1.82E-04 |
| 17 | GO:0044183: protein binding involved in protein folding | 3.54E-04 |
| 18 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 4.10E-04 |
| 19 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 4.10E-04 |
| 20 | GO:0043021: ribonucleoprotein complex binding | 4.10E-04 |
| 21 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 4.10E-04 |
| 22 | GO:0005078: MAP-kinase scaffold activity | 4.10E-04 |
| 23 | GO:0050897: cobalt ion binding | 4.25E-04 |
| 24 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.69E-04 |
| 25 | GO:0008097: 5S rRNA binding | 9.55E-04 |
| 26 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.57E-04 |
| 27 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.98E-03 |
| 28 | GO:0008235: metalloexopeptidase activity | 2.80E-03 |
| 29 | GO:0015288: porin activity | 3.24E-03 |
| 30 | GO:0008308: voltage-gated anion channel activity | 3.71E-03 |
| 31 | GO:0000049: tRNA binding | 6.35E-03 |
| 32 | GO:0015266: protein channel activity | 6.94E-03 |
| 33 | GO:0004407: histone deacetylase activity | 9.48E-03 |
| 34 | GO:0051082: unfolded protein binding | 1.00E-02 |
| 35 | GO:0051087: chaperone binding | 1.02E-02 |
| 36 | GO:0005525: GTP binding | 1.20E-02 |
| 37 | GO:0010181: FMN binding | 1.62E-02 |
| 38 | GO:0003743: translation initiation factor activity | 2.03E-02 |
| 39 | GO:0005507: copper ion binding | 3.57E-02 |
| 40 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.65E-02 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.44E-02 |
| 42 | GO:0003924: GTPase activity | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 4 | GO:0005840: ribosome | 6.67E-44 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 1.38E-43 |
| 6 | GO:0022626: cytosolic ribosome | 1.74E-39 |
| 7 | GO:0005730: nucleolus | 4.69E-31 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 3.12E-27 |
| 9 | GO:0015934: large ribosomal subunit | 4.10E-15 |
| 10 | GO:0005829: cytosol | 1.13E-11 |
| 11 | GO:0009506: plasmodesma | 2.93E-09 |
| 12 | GO:0005737: cytoplasm | 1.85E-08 |
| 13 | GO:0005773: vacuole | 3.98E-08 |
| 14 | GO:0032040: small-subunit processome | 2.03E-07 |
| 15 | GO:0031428: box C/D snoRNP complex | 5.16E-07 |
| 16 | GO:0005736: DNA-directed RNA polymerase I complex | 4.68E-06 |
| 17 | GO:0005666: DNA-directed RNA polymerase III complex | 6.38E-06 |
| 18 | GO:0015030: Cajal body | 6.38E-06 |
| 19 | GO:0005774: vacuolar membrane | 6.61E-06 |
| 20 | GO:0000418: DNA-directed RNA polymerase IV complex | 8.47E-06 |
| 21 | GO:0005834: heterotrimeric G-protein complex | 1.27E-05 |
| 22 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.40E-05 |
| 23 | GO:0005758: mitochondrial intermembrane space | 3.69E-05 |
| 24 | GO:0005743: mitochondrial inner membrane | 6.62E-05 |
| 25 | GO:0009507: chloroplast | 1.96E-04 |
| 26 | GO:0005618: cell wall | 2.35E-04 |
| 27 | GO:0016020: membrane | 2.47E-04 |
| 28 | GO:0071010: prespliceosome | 4.10E-04 |
| 29 | GO:0070545: PeBoW complex | 4.10E-04 |
| 30 | GO:0019013: viral nucleocapsid | 4.63E-04 |
| 31 | GO:0000419: DNA-directed RNA polymerase V complex | 6.48E-04 |
| 32 | GO:0034715: pICln-Sm protein complex | 6.69E-04 |
| 33 | GO:0034719: SMN-Sm protein complex | 6.69E-04 |
| 34 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.11E-03 |
| 35 | GO:0005739: mitochondrion | 1.19E-03 |
| 36 | GO:0005747: mitochondrial respiratory chain complex I | 1.22E-03 |
| 37 | GO:0005682: U5 snRNP | 1.27E-03 |
| 38 | GO:0005687: U4 snRNP | 1.61E-03 |
| 39 | GO:0097526: spliceosomal tri-snRNP complex | 1.61E-03 |
| 40 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.65E-03 |
| 41 | GO:0005851: eukaryotic translation initiation factor 2B complex | 1.98E-03 |
| 42 | GO:0000243: commitment complex | 1.98E-03 |
| 43 | GO:0005689: U12-type spliceosomal complex | 2.38E-03 |
| 44 | GO:0016272: prefoldin complex | 2.38E-03 |
| 45 | GO:0016363: nuclear matrix | 2.38E-03 |
| 46 | GO:0030687: preribosome, large subunit precursor | 2.80E-03 |
| 47 | GO:0005622: intracellular | 3.65E-03 |
| 48 | GO:0046930: pore complex | 3.71E-03 |
| 49 | GO:0005742: mitochondrial outer membrane translocase complex | 3.71E-03 |
| 50 | GO:0005685: U1 snRNP | 4.20E-03 |
| 51 | GO:0071011: precatalytic spliceosome | 4.71E-03 |
| 52 | GO:0016604: nuclear body | 4.71E-03 |
| 53 | GO:0005686: U2 snRNP | 5.24E-03 |
| 54 | GO:0071013: catalytic step 2 spliceosome | 5.79E-03 |
| 55 | GO:0005852: eukaryotic translation initiation factor 3 complex | 5.79E-03 |
| 56 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 5.80E-03 |
| 57 | GO:0005741: mitochondrial outer membrane | 1.09E-02 |
| 58 | GO:0015935: small ribosomal subunit | 1.09E-02 |
| 59 | GO:0016592: mediator complex | 1.87E-02 |
| 60 | GO:0030529: intracellular ribonucleoprotein complex | 2.32E-02 |