co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
3	GO:0031591: wybutosine biosynthetic process	0.00E+00
4	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
5	GO:0071731: response to nitric oxide	0.00E+00
6	GO:0039694: viral RNA genome replication	0.00E+00
7	GO:0090069: regulation of ribosome biogenesis	0.00E+00
8	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
9	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
10	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
11	GO:0006364: rRNA processing	9.12E-17
12	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.18E-09
13	GO:0042254: ribosome biogenesis	1.62E-07
14	GO:0010501: RNA secondary structure unwinding	9.36E-07
15	GO:0009553: embryo sac development	6.86E-05
16	GO:0031120: snRNA pseudouridine synthesis	1.20E-04
17	GO:0000469: cleavage involved in rRNA processing	1.20E-04
18	GO:0031118: rRNA pseudouridine synthesis	1.20E-04
19	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.20E-04
20	GO:0030490: maturation of SSU-rRNA	1.20E-04
21	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.20E-04
22	GO:1902182: shoot apical meristem development	1.20E-04
23	GO:2000232: regulation of rRNA processing	1.20E-04
24	GO:0043985: histone H4-R3 methylation	1.20E-04
25	GO:0009451: RNA modification	1.99E-04
26	GO:0080009: mRNA methylation	2.77E-04
27	GO:0045041: protein import into mitochondrial intermembrane space	2.77E-04
28	GO:0034470: ncRNA processing	2.77E-04
29	GO:0042780: tRNA 3'-end processing	4.58E-04
30	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.58E-04
31	GO:0045604: regulation of epidermal cell differentiation	4.58E-04
32	GO:0007005: mitochondrion organization	5.41E-04
33	GO:0009793: embryo development ending in seed dormancy	5.53E-04
34	GO:0007276: gamete generation	6.57E-04
35	GO:0051131: chaperone-mediated protein complex assembly	6.57E-04
36	GO:0000460: maturation of 5.8S rRNA	8.72E-04
37	GO:0006479: protein methylation	8.72E-04
38	GO:1900864: mitochondrial RNA modification	8.72E-04
39	GO:0046345: abscisic acid catabolic process	8.72E-04
40	GO:0042273: ribosomal large subunit biogenesis	8.72E-04
41	GO:0048825: cotyledon development	9.17E-04
42	GO:0032259: methylation	9.17E-04
43	GO:0000470: maturation of LSU-rRNA	1.35E-03
44	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.35E-03
45	GO:0006458: 'de novo' protein folding	1.61E-03
46	GO:0030488: tRNA methylation	1.61E-03
47	GO:0048444: floral organ morphogenesis	1.61E-03
48	GO:0010077: maintenance of inflorescence meristem identity	1.61E-03
49	GO:0042026: protein refolding	1.61E-03
50	GO:0006400: tRNA modification	1.89E-03
51	GO:0045995: regulation of embryonic development	1.89E-03
52	GO:0001522: pseudouridine synthesis	2.19E-03
53	GO:0000028: ribosomal small subunit assembly	2.19E-03
54	GO:0019827: stem cell population maintenance	2.19E-03
55	GO:0042255: ribosome assembly	2.19E-03
56	GO:0009880: embryonic pattern specification	2.50E-03
57	GO:2000024: regulation of leaf development	2.82E-03
58	GO:0001708: cell fate specification	2.82E-03
59	GO:0006349: regulation of gene expression by genetic imprinting	3.16E-03
60	GO:1900865: chloroplast RNA modification	3.16E-03
61	GO:0010162: seed dormancy process	3.51E-03
62	GO:2000012: regulation of auxin polar transport	4.64E-03
63	GO:0016569: covalent chromatin modification	5.26E-03
64	GO:0010030: positive regulation of seed germination	5.46E-03
65	GO:0009944: polarity specification of adaxial/abaxial axis	6.32E-03
66	GO:0051302: regulation of cell division	6.76E-03
67	GO:0061077: chaperone-mediated protein folding	7.22E-03
68	GO:0009790: embryo development	8.15E-03
69	GO:0009294: DNA mediated transformation	8.18E-03
70	GO:0009561: megagametogenesis	8.66E-03
71	GO:0006342: chromatin silencing	1.02E-02
72	GO:0009960: endosperm development	1.02E-02
73	GO:0010305: leaf vascular tissue pattern formation	1.02E-02
74	GO:0051301: cell division	1.22E-02
75	GO:0048366: leaf development	1.76E-02
76	GO:0016049: cell growth	1.79E-02
77	GO:0048527: lateral root development	2.05E-02
78	GO:0045892: negative regulation of transcription, DNA-templated	2.26E-02
79	GO:0009926: auxin polar transport	2.63E-02
80	GO:0000154: rRNA modification	2.85E-02
81	GO:0006260: DNA replication	3.01E-02
82	GO:0009909: regulation of flower development	3.49E-02
83	GO:0006417: regulation of translation	3.49E-02
84	GO:0009651: response to salt stress	4.11E-02
85	GO:0006396: RNA processing	4.26E-02
86	GO:0009555: pollen development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	0.00E+00
2	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
3	GO:0004164: diphthine synthase activity	0.00E+00
4	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
5	GO:0003723: RNA binding	3.26E-18
6	GO:0000166: nucleotide binding	2.40E-13
7	GO:0008026: ATP-dependent helicase activity	1.36E-10
8	GO:0004004: ATP-dependent RNA helicase activity	1.41E-07
9	GO:0030515: snoRNA binding	5.23E-07
10	GO:0043021: ribonucleoprotein complex binding	7.28E-07
11	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.60E-06
12	GO:0001054: RNA polymerase I activity	4.07E-06
13	GO:0008168: methyltransferase activity	4.03E-05
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.20E-04
15	GO:0004519: endonuclease activity	1.89E-04
16	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.77E-04
17	GO:0004407: histone deacetylase activity	4.09E-04
18	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.58E-04
19	GO:0070181: small ribosomal subunit rRNA binding	4.58E-04
20	GO:0003676: nucleic acid binding	5.94E-04
21	GO:0043022: ribosome binding	2.19E-03
22	GO:0044183: protein binding involved in protein folding	3.88E-03
23	GO:0004521: endoribonuclease activity	4.26E-03
24	GO:0001056: RNA polymerase III activity	4.26E-03
25	GO:0009982: pseudouridine synthase activity	4.64E-03
26	GO:0051082: unfolded protein binding	5.58E-03
27	GO:0003887: DNA-directed DNA polymerase activity	5.88E-03
28	GO:0043130: ubiquitin binding	6.32E-03
29	GO:0004527: exonuclease activity	1.02E-02
30	GO:0003713: transcription coactivator activity	1.02E-02
31	GO:0005524: ATP binding	1.18E-02
32	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.79E-02
33	GO:0016787: hydrolase activity	2.13E-02
34	GO:0003746: translation elongation factor activity	2.19E-02
35	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.26E-02
36	GO:0042393: histone binding	2.41E-02
37	GO:0008270: zinc ion binding	4.02E-02
38	GO:0003729: mRNA binding	4.36E-02
39	GO:0004386: helicase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0036396: MIS complex	0.00E+00
4	GO:0019034: viral replication complex	0.00E+00
5	GO:0070545: PeBoW complex	0.00E+00
6	GO:0030692: Noc4p-Nop14p complex	0.00E+00
7	GO:0005730: nucleolus	1.20E-33
8	GO:0005634: nucleus	8.49E-13
9	GO:0032040: small-subunit processome	2.09E-12
10	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	9.07E-09
11	GO:0030687: preribosome, large subunit precursor	5.23E-07
12	GO:0005736: DNA-directed RNA polymerase I complex	1.69E-06
13	GO:0005834: heterotrimeric G-protein complex	5.77E-05
14	GO:0005654: nucleoplasm	1.04E-04
15	GO:0030688: preribosome, small subunit precursor	1.20E-04
16	GO:0031429: box H/ACA snoRNP complex	6.57E-04
17	GO:0031428: box C/D snoRNP complex	1.35E-03
18	GO:0034399: nuclear periphery	2.19E-03
19	GO:0005763: mitochondrial small ribosomal subunit	2.82E-03
20	GO:0005666: DNA-directed RNA polymerase III complex	3.16E-03
21	GO:0043234: protein complex	5.88E-03
22	GO:0042651: thylakoid membrane	6.76E-03
23	GO:0015935: small ribosomal subunit	7.22E-03
24	GO:0005759: mitochondrial matrix	8.77E-03
25	GO:0019898: extrinsic component of membrane	1.13E-02
26	GO:0030529: intracellular ribonucleoprotein complex	1.54E-02
27	GO:0015934: large ribosomal subunit	2.05E-02
28	GO:0005829: cytosol	3.39E-02
29	GO:0005747: mitochondrial respiratory chain complex I	3.74E-02
30	GO:0016607: nuclear speck	3.74E-02