GO Enrichment Analysis of Co-expressed Genes with
AT3G55400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 6 | GO:0010021: amylopectin biosynthetic process | 3.53E-06 |
| 7 | GO:0032544: plastid translation | 3.09E-05 |
| 8 | GO:0005982: starch metabolic process | 4.74E-05 |
| 9 | GO:0000023: maltose metabolic process | 5.79E-05 |
| 10 | GO:0000025: maltose catabolic process | 5.79E-05 |
| 11 | GO:0005976: polysaccharide metabolic process | 1.41E-04 |
| 12 | GO:0090342: regulation of cell aging | 1.41E-04 |
| 13 | GO:0048281: inflorescence morphogenesis | 2.40E-04 |
| 14 | GO:0006518: peptide metabolic process | 2.40E-04 |
| 15 | GO:0006284: base-excision repair | 2.46E-04 |
| 16 | GO:0010148: transpiration | 3.49E-04 |
| 17 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.49E-04 |
| 18 | GO:0019252: starch biosynthetic process | 3.61E-04 |
| 19 | GO:0051322: anaphase | 4.66E-04 |
| 20 | GO:0010600: regulation of auxin biosynthetic process | 4.66E-04 |
| 21 | GO:0051205: protein insertion into membrane | 4.66E-04 |
| 22 | GO:0006808: regulation of nitrogen utilization | 4.66E-04 |
| 23 | GO:0010027: thylakoid membrane organization | 5.54E-04 |
| 24 | GO:0016120: carotene biosynthetic process | 5.92E-04 |
| 25 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.92E-04 |
| 26 | GO:0000470: maturation of LSU-rRNA | 7.24E-04 |
| 27 | GO:0009913: epidermal cell differentiation | 7.24E-04 |
| 28 | GO:0010190: cytochrome b6f complex assembly | 7.24E-04 |
| 29 | GO:0009658: chloroplast organization | 7.34E-04 |
| 30 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 8.63E-04 |
| 31 | GO:0010161: red light signaling pathway | 1.01E-03 |
| 32 | GO:0070370: cellular heat acclimation | 1.01E-03 |
| 33 | GO:0010103: stomatal complex morphogenesis | 1.01E-03 |
| 34 | GO:0010928: regulation of auxin mediated signaling pathway | 1.16E-03 |
| 35 | GO:0005978: glycogen biosynthetic process | 1.16E-03 |
| 36 | GO:0030091: protein repair | 1.16E-03 |
| 37 | GO:0009704: de-etiolation | 1.16E-03 |
| 38 | GO:0001558: regulation of cell growth | 1.32E-03 |
| 39 | GO:0017004: cytochrome complex assembly | 1.32E-03 |
| 40 | GO:0010206: photosystem II repair | 1.48E-03 |
| 41 | GO:0009773: photosynthetic electron transport in photosystem I | 2.02E-03 |
| 42 | GO:0006415: translational termination | 2.02E-03 |
| 43 | GO:0009073: aromatic amino acid family biosynthetic process | 2.02E-03 |
| 44 | GO:0005983: starch catabolic process | 2.21E-03 |
| 45 | GO:0045037: protein import into chloroplast stroma | 2.21E-03 |
| 46 | GO:0010102: lateral root morphogenesis | 2.41E-03 |
| 47 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.26E-03 |
| 48 | GO:0006289: nucleotide-excision repair | 3.26E-03 |
| 49 | GO:0051302: regulation of cell division | 3.49E-03 |
| 50 | GO:0006418: tRNA aminoacylation for protein translation | 3.49E-03 |
| 51 | GO:0010017: red or far-red light signaling pathway | 3.95E-03 |
| 52 | GO:0016226: iron-sulfur cluster assembly | 3.95E-03 |
| 53 | GO:0009686: gibberellin biosynthetic process | 4.20E-03 |
| 54 | GO:0001944: vasculature development | 4.20E-03 |
| 55 | GO:0016117: carotenoid biosynthetic process | 4.69E-03 |
| 56 | GO:0006412: translation | 5.26E-03 |
| 57 | GO:0048825: cotyledon development | 5.75E-03 |
| 58 | GO:0042254: ribosome biogenesis | 5.77E-03 |
| 59 | GO:0000302: response to reactive oxygen species | 6.02E-03 |
| 60 | GO:0055114: oxidation-reduction process | 6.45E-03 |
| 61 | GO:0000910: cytokinesis | 7.47E-03 |
| 62 | GO:0006979: response to oxidative stress | 7.88E-03 |
| 63 | GO:0015995: chlorophyll biosynthetic process | 8.71E-03 |
| 64 | GO:0009817: defense response to fungus, incompatible interaction | 9.36E-03 |
| 65 | GO:0048481: plant ovule development | 9.36E-03 |
| 66 | GO:0006281: DNA repair | 1.04E-02 |
| 67 | GO:0009631: cold acclimation | 1.04E-02 |
| 68 | GO:0034599: cellular response to oxidative stress | 1.14E-02 |
| 69 | GO:0009965: leaf morphogenesis | 1.44E-02 |
| 70 | GO:0009664: plant-type cell wall organization | 1.55E-02 |
| 71 | GO:0009585: red, far-red light phototransduction | 1.63E-02 |
| 72 | GO:0009740: gibberellic acid mediated signaling pathway | 2.01E-02 |
| 73 | GO:0009845: seed germination | 2.60E-02 |
| 74 | GO:0042744: hydrogen peroxide catabolic process | 2.70E-02 |
| 75 | GO:0009790: embryo development | 2.75E-02 |
| 76 | GO:0040008: regulation of growth | 2.99E-02 |
| 77 | GO:0042742: defense response to bacterium | 3.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 4 | GO:2001070: starch binding | 9.15E-06 |
| 5 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 5.79E-05 |
| 6 | GO:0004134: 4-alpha-glucanotransferase activity | 5.79E-05 |
| 7 | GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity | 5.79E-05 |
| 8 | GO:0033201: alpha-1,4-glucan synthase activity | 1.41E-04 |
| 9 | GO:0008967: phosphoglycolate phosphatase activity | 1.41E-04 |
| 10 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.41E-04 |
| 11 | GO:0010297: heteropolysaccharide binding | 1.41E-04 |
| 12 | GO:0043169: cation binding | 2.40E-04 |
| 13 | GO:0004373: glycogen (starch) synthase activity | 2.40E-04 |
| 14 | GO:0017150: tRNA dihydrouridine synthase activity | 2.40E-04 |
| 15 | GO:0002161: aminoacyl-tRNA editing activity | 2.40E-04 |
| 16 | GO:0019843: rRNA binding | 2.79E-04 |
| 17 | GO:0016851: magnesium chelatase activity | 3.49E-04 |
| 18 | GO:0016149: translation release factor activity, codon specific | 3.49E-04 |
| 19 | GO:0043023: ribosomal large subunit binding | 3.49E-04 |
| 20 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.66E-04 |
| 21 | GO:0019104: DNA N-glycosylase activity | 4.66E-04 |
| 22 | GO:0019199: transmembrane receptor protein kinase activity | 4.66E-04 |
| 23 | GO:0009011: starch synthase activity | 4.66E-04 |
| 24 | GO:0042277: peptide binding | 4.66E-04 |
| 25 | GO:0008725: DNA-3-methyladenine glycosylase activity | 5.92E-04 |
| 26 | GO:0004040: amidase activity | 5.92E-04 |
| 27 | GO:0004130: cytochrome-c peroxidase activity | 7.24E-04 |
| 28 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 8.63E-04 |
| 29 | GO:0004033: aldo-keto reductase (NADP) activity | 1.16E-03 |
| 30 | GO:0003747: translation release factor activity | 1.48E-03 |
| 31 | GO:0047372: acylglycerol lipase activity | 2.02E-03 |
| 32 | GO:0000049: tRNA binding | 2.21E-03 |
| 33 | GO:0051536: iron-sulfur cluster binding | 3.26E-03 |
| 34 | GO:0004812: aminoacyl-tRNA ligase activity | 4.69E-03 |
| 35 | GO:0000287: magnesium ion binding | 5.56E-03 |
| 36 | GO:0048038: quinone binding | 6.02E-03 |
| 37 | GO:0003684: damaged DNA binding | 6.88E-03 |
| 38 | GO:0008236: serine-type peptidase activity | 9.03E-03 |
| 39 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 9.36E-03 |
| 40 | GO:0004222: metalloendopeptidase activity | 1.00E-02 |
| 41 | GO:0016491: oxidoreductase activity | 1.11E-02 |
| 42 | GO:0003746: translation elongation factor activity | 1.11E-02 |
| 43 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.18E-02 |
| 44 | GO:0003735: structural constituent of ribosome | 1.87E-02 |
| 45 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.51E-02 |
| 46 | GO:0004252: serine-type endopeptidase activity | 2.65E-02 |
| 47 | GO:0008565: protein transporter activity | 2.80E-02 |
| 48 | GO:0008017: microtubule binding | 3.20E-02 |
| 49 | GO:0004601: peroxidase activity | 4.22E-02 |
| 50 | GO:0016788: hydrolase activity, acting on ester bonds | 4.28E-02 |
| 51 | GO:0050660: flavin adenine dinucleotide binding | 4.68E-02 |
| 52 | GO:0008233: peptidase activity | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.27E-23 |
| 2 | GO:0009534: chloroplast thylakoid | 2.88E-17 |
| 3 | GO:0009570: chloroplast stroma | 1.24E-12 |
| 4 | GO:0009941: chloroplast envelope | 6.29E-09 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.80E-07 |
| 6 | GO:0009579: thylakoid | 8.99E-06 |
| 7 | GO:0009501: amyloplast | 2.41E-05 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 5.79E-05 |
| 9 | GO:0031977: thylakoid lumen | 7.15E-05 |
| 10 | GO:0043036: starch grain | 1.41E-04 |
| 11 | GO:0009706: chloroplast inner membrane | 2.06E-04 |
| 12 | GO:0010007: magnesium chelatase complex | 2.40E-04 |
| 13 | GO:0009509: chromoplast | 2.40E-04 |
| 14 | GO:0010287: plastoglobule | 2.59E-04 |
| 15 | GO:0009543: chloroplast thylakoid lumen | 2.79E-04 |
| 16 | GO:0009536: plastid | 4.17E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 5.92E-04 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.48E-03 |
| 19 | GO:0005840: ribosome | 1.65E-03 |
| 20 | GO:0009574: preprophase band | 2.41E-03 |
| 21 | GO:0005623: cell | 2.75E-03 |
| 22 | GO:0042651: thylakoid membrane | 3.49E-03 |
| 23 | GO:0009524: phragmoplast | 2.55E-02 |
| 24 | GO:0005874: microtubule | 4.80E-02 |