co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
2	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
3	GO:0006364: rRNA processing	5.26E-13
4	GO:0031120: snRNA pseudouridine synthesis	2.53E-05
5	GO:0000469: cleavage involved in rRNA processing	2.53E-05
6	GO:0031118: rRNA pseudouridine synthesis	2.53E-05
7	GO:0030490: maturation of SSU-rRNA	2.53E-05
8	GO:0043985: histone H4-R3 methylation	2.53E-05
9	GO:0009553: embryo sac development	4.13E-05
10	GO:0080009: mRNA methylation	6.44E-05
11	GO:0045041: protein import into mitochondrial intermembrane space	6.44E-05
12	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.44E-05
13	GO:0010501: RNA secondary structure unwinding	9.42E-05
14	GO:0045604: regulation of epidermal cell differentiation	1.13E-04
15	GO:0007276: gamete generation	1.69E-04
16	GO:0051131: chaperone-mediated protein complex assembly	1.69E-04
17	GO:0006479: protein methylation	2.30E-04
18	GO:0046345: abscisic acid catabolic process	2.30E-04
19	GO:0042273: ribosomal large subunit biogenesis	2.30E-04
20	GO:0006458: 'de novo' protein folding	4.36E-04
21	GO:0048444: floral organ morphogenesis	4.36E-04
22	GO:0010077: maintenance of inflorescence meristem identity	4.36E-04
23	GO:0042026: protein refolding	4.36E-04
24	GO:0045995: regulation of embryonic development	5.11E-04
25	GO:2000024: regulation of leaf development	7.52E-04
26	GO:0010162: seed dormancy process	9.24E-04
27	GO:0010582: floral meristem determinacy	1.11E-03
28	GO:0010030: positive regulation of seed germination	1.40E-03
29	GO:0009944: polarity specification of adaxial/abaxial axis	1.61E-03
30	GO:0051302: regulation of cell division	1.72E-03
31	GO:0061077: chaperone-mediated protein folding	1.83E-03
32	GO:0007005: mitochondrion organization	1.95E-03
33	GO:0009294: DNA mediated transformation	2.06E-03
34	GO:0009561: megagametogenesis	2.18E-03
35	GO:0048825: cotyledon development	2.80E-03
36	GO:0009555: pollen development	6.37E-03
37	GO:0000154: rRNA modification	6.85E-03
38	GO:0006417: regulation of translation	8.35E-03
39	GO:0016569: covalent chromatin modification	9.54E-03
40	GO:0006396: RNA processing	1.02E-02
41	GO:0009058: biosynthetic process	1.21E-02
42	GO:0009451: RNA modification	1.49E-02
43	GO:0007166: cell surface receptor signaling pathway	1.61E-02
44	GO:0008380: RNA splicing	1.66E-02
45	GO:0045892: negative regulation of transcription, DNA-templated	2.67E-02
46	GO:0032259: methylation	2.98E-02
47	GO:0009408: response to heat	3.07E-02

Rank	GO Term	Adjusted P value
1	GO:0003723: RNA binding	4.31E-08
2	GO:0000166: nucleotide binding	5.28E-06
3	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.53E-05
4	GO:0008026: ATP-dependent helicase activity	4.74E-05
5	GO:0043021: ribonucleoprotein complex binding	6.44E-05
6	GO:0004004: ATP-dependent RNA helicase activity	2.28E-04
7	GO:0030515: snoRNA binding	5.11E-04
8	GO:0008173: RNA methyltransferase activity	6.69E-04
9	GO:0044183: protein binding involved in protein folding	1.01E-03
10	GO:0004521: endoribonuclease activity	1.11E-03
11	GO:0009982: pseudouridine synthase activity	1.20E-03
12	GO:0004407: histone deacetylase activity	1.61E-03
13	GO:0008168: methyltransferase activity	1.92E-03
14	GO:0008483: transaminase activity	3.48E-03
15	GO:0004519: endonuclease activity	3.92E-03
16	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.36E-03
17	GO:0003746: translation elongation factor activity	5.31E-03
18	GO:0000987: core promoter proximal region sequence-specific DNA binding	5.47E-03
19	GO:0051082: unfolded protein binding	9.95E-03
20	GO:0019843: rRNA binding	1.17E-02
21	GO:0030170: pyridoxal phosphate binding	1.25E-02
22	GO:0016787: hydrolase activity	2.78E-02
23	GO:0003924: GTPase activity	3.07E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0036396: MIS complex	0.00E+00
3	GO:0005730: nucleolus	7.94E-13
4	GO:0005634: nucleus	2.81E-07
5	GO:0030687: preribosome, large subunit precursor	4.77E-06
6	GO:0032040: small-subunit processome	2.30E-05
7	GO:0030688: preribosome, small subunit precursor	2.53E-05
8	GO:0070545: PeBoW complex	6.44E-05
9	GO:0031429: box H/ACA snoRNP complex	1.69E-04
10	GO:0031428: box C/D snoRNP complex	3.65E-04
11	GO:0034399: nuclear periphery	5.89E-04
12	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.18E-03
13	GO:0016607: nuclear speck	8.93E-03
14	GO:0005759: mitochondrial matrix	1.37E-02
15	GO:0022626: cytosolic ribosome	4.47E-02