Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0090042: tubulin deacetylation0.00E+00
13GO:0015979: photosynthesis1.47E-23
14GO:0009735: response to cytokinin3.31E-16
15GO:0006412: translation1.07E-14
16GO:0032544: plastid translation7.06E-14
17GO:0009773: photosynthetic electron transport in photosystem I2.14E-10
18GO:0042254: ribosome biogenesis1.30E-09
19GO:0009409: response to cold3.31E-08
20GO:0010027: thylakoid membrane organization2.27E-07
21GO:0015995: chlorophyll biosynthetic process3.87E-07
22GO:0019464: glycine decarboxylation via glycine cleavage system7.06E-07
23GO:0030388: fructose 1,6-bisphosphate metabolic process5.92E-06
24GO:0010196: nonphotochemical quenching8.43E-06
25GO:0042742: defense response to bacterium1.41E-05
26GO:0006000: fructose metabolic process2.08E-05
27GO:0010206: photosystem II repair2.50E-05
28GO:0009658: chloroplast organization3.01E-05
29GO:0010021: amylopectin biosynthetic process8.11E-05
30GO:0045727: positive regulation of translation8.11E-05
31GO:0006546: glycine catabolic process8.11E-05
32GO:0009817: defense response to fungus, incompatible interaction1.56E-04
33GO:0042549: photosystem II stabilization1.82E-04
34GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.82E-04
35GO:0006418: tRNA aminoacylation for protein translation1.89E-04
36GO:0009768: photosynthesis, light harvesting in photosystem I1.89E-04
37GO:0061077: chaperone-mediated protein folding2.17E-04
38GO:0042026: protein refolding2.46E-04
39GO:0009645: response to low light intensity stimulus3.19E-04
40GO:0080093: regulation of photorespiration3.63E-04
41GO:0043007: maintenance of rDNA3.63E-04
42GO:0031998: regulation of fatty acid beta-oxidation3.63E-04
43GO:1902458: positive regulation of stomatal opening3.63E-04
44GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.63E-04
45GO:0006438: valyl-tRNA aminoacylation3.63E-04
46GO:0043489: RNA stabilization3.63E-04
47GO:0005978: glycogen biosynthetic process4.01E-04
48GO:0045454: cell redox homeostasis4.75E-04
49GO:0006002: fructose 6-phosphate metabolic process4.91E-04
50GO:0019252: starch biosynthetic process5.10E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process7.89E-04
52GO:0010270: photosystem II oxygen evolving complex assembly7.89E-04
53GO:0019388: galactose catabolic process7.89E-04
54GO:0006782: protoporphyrinogen IX biosynthetic process8.10E-04
55GO:0043085: positive regulation of catalytic activity9.32E-04
56GO:0005983: starch catabolic process1.06E-03
57GO:0006094: gluconeogenesis1.20E-03
58GO:0009767: photosynthetic electron transport chain1.20E-03
59GO:0005986: sucrose biosynthetic process1.20E-03
60GO:0018298: protein-chromophore linkage1.24E-03
61GO:0071492: cellular response to UV-A1.28E-03
62GO:0016050: vesicle organization1.28E-03
63GO:0048281: inflorescence morphogenesis1.28E-03
64GO:0006518: peptide metabolic process1.28E-03
65GO:0010207: photosystem II assembly1.36E-03
66GO:0010020: chloroplast fission1.36E-03
67GO:0034599: cellular response to oxidative stress1.76E-03
68GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.84E-03
69GO:0051085: chaperone mediated protein folding requiring cofactor1.84E-03
70GO:0006241: CTP biosynthetic process1.84E-03
71GO:0010306: rhamnogalacturonan II biosynthetic process1.84E-03
72GO:0006165: nucleoside diphosphate phosphorylation1.84E-03
73GO:0010731: protein glutathionylation1.84E-03
74GO:0006228: UTP biosynthetic process1.84E-03
75GO:0010148: transpiration1.84E-03
76GO:0009590: detection of gravity1.84E-03
77GO:0006810: transport2.39E-03
78GO:0010037: response to carbon dioxide2.47E-03
79GO:0006808: regulation of nitrogen utilization2.47E-03
80GO:0015976: carbon utilization2.47E-03
81GO:0071486: cellular response to high light intensity2.47E-03
82GO:0009765: photosynthesis, light harvesting2.47E-03
83GO:0006109: regulation of carbohydrate metabolic process2.47E-03
84GO:0006183: GTP biosynthetic process2.47E-03
85GO:2000122: negative regulation of stomatal complex development2.47E-03
86GO:0009644: response to high light intensity2.55E-03
87GO:0006097: glyoxylate cycle3.16E-03
88GO:0006461: protein complex assembly3.16E-03
89GO:0000304: response to singlet oxygen3.16E-03
90GO:0006544: glycine metabolic process3.16E-03
91GO:0032543: mitochondrial translation3.16E-03
92GO:0045038: protein import into chloroplast thylakoid membrane3.16E-03
93GO:0006662: glycerol ether metabolic process3.72E-03
94GO:0006563: L-serine metabolic process3.91E-03
95GO:0000470: maturation of LSU-rRNA3.91E-03
96GO:0006828: manganese ion transport3.91E-03
97GO:0010190: cytochrome b6f complex assembly3.91E-03
98GO:0009955: adaxial/abaxial pattern specification4.71E-03
99GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.71E-03
100GO:0006458: 'de novo' protein folding4.71E-03
101GO:1901259: chloroplast rRNA processing4.71E-03
102GO:0010103: stomatal complex morphogenesis5.56E-03
103GO:0070370: cellular heat acclimation5.56E-03
104GO:2000070: regulation of response to water deprivation6.46E-03
105GO:0000105: histidine biosynthetic process6.46E-03
106GO:0015996: chlorophyll catabolic process7.41E-03
107GO:0001558: regulation of cell growth7.41E-03
108GO:0007186: G-protein coupled receptor signaling pathway7.41E-03
109GO:0009657: plastid organization7.41E-03
110GO:0006783: heme biosynthetic process8.41E-03
111GO:0005982: starch metabolic process9.46E-03
112GO:0006779: porphyrin-containing compound biosynthetic process9.46E-03
113GO:0035999: tetrahydrofolate interconversion9.46E-03
114GO:0010218: response to far red light9.60E-03
115GO:0007623: circadian rhythm1.06E-02
116GO:0009637: response to blue light1.10E-02
117GO:0009853: photorespiration1.10E-02
118GO:0009750: response to fructose1.17E-02
119GO:0018119: peptidyl-cysteine S-nitrosylation1.17E-02
120GO:0006816: calcium ion transport1.17E-02
121GO:0009073: aromatic amino acid family biosynthetic process1.17E-02
122GO:0006415: translational termination1.17E-02
123GO:0000272: polysaccharide catabolic process1.17E-02
124GO:0006457: protein folding1.22E-02
125GO:0008152: metabolic process1.27E-02
126GO:0045037: protein import into chloroplast stroma1.29E-02
127GO:0010102: lateral root morphogenesis1.41E-02
128GO:0006108: malate metabolic process1.41E-02
129GO:0006006: glucose metabolic process1.41E-02
130GO:0010114: response to red light1.43E-02
131GO:0019253: reductive pentose-phosphate cycle1.53E-02
132GO:0005985: sucrose metabolic process1.66E-02
133GO:0009793: embryo development ending in seed dormancy1.80E-02
134GO:0000162: tryptophan biosynthetic process1.80E-02
135GO:0009944: polarity specification of adaxial/abaxial axis1.93E-02
136GO:0000027: ribosomal large subunit assembly1.93E-02
137GO:0006364: rRNA processing1.93E-02
138GO:0006289: nucleotide-excision repair1.93E-02
139GO:0051302: regulation of cell division2.07E-02
140GO:0016575: histone deacetylation2.07E-02
141GO:0007017: microtubule-based process2.07E-02
142GO:0031408: oxylipin biosynthetic process2.22E-02
143GO:0016114: terpenoid biosynthetic process2.22E-02
144GO:0007005: mitochondrion organization2.37E-02
145GO:0001944: vasculature development2.52E-02
146GO:0009411: response to UV2.52E-02
147GO:0009561: megagametogenesis2.67E-02
148GO:0055114: oxidation-reduction process2.74E-02
149GO:0000413: protein peptidyl-prolyl isomerization2.99E-02
150GO:0042631: cellular response to water deprivation2.99E-02
151GO:0010182: sugar mediated signaling pathway3.16E-02
152GO:0048868: pollen tube development3.16E-02
153GO:0015986: ATP synthesis coupled proton transport3.32E-02
154GO:0000302: response to reactive oxygen species3.67E-02
155GO:0009790: embryo development4.01E-02
156GO:0030163: protein catabolic process4.02E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0051738: xanthophyll binding0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0043014: alpha-tubulin binding0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0019843: rRNA binding6.89E-24
16GO:0003735: structural constituent of ribosome1.39E-16
17GO:0005528: FK506 binding4.15E-11
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.72E-09
19GO:0008266: poly(U) RNA binding6.50E-08
20GO:0051920: peroxiredoxin activity5.29E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.92E-06
22GO:0016168: chlorophyll binding6.79E-06
23GO:0016209: antioxidant activity1.27E-05
24GO:0051082: unfolded protein binding1.69E-05
25GO:0004324: ferredoxin-NADP+ reductase activity2.08E-05
26GO:0002161: aminoacyl-tRNA editing activity2.08E-05
27GO:0004375: glycine dehydrogenase (decarboxylating) activity4.58E-05
28GO:0016851: magnesium chelatase activity4.58E-05
29GO:0031072: heat shock protein binding8.34E-05
30GO:0003959: NADPH dehydrogenase activity1.27E-04
31GO:0031409: pigment binding1.41E-04
32GO:0004812: aminoacyl-tRNA ligase activity3.46E-04
33GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.63E-04
34GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.63E-04
35GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.63E-04
36GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.63E-04
37GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.63E-04
38GO:0050308: sugar-phosphatase activity3.63E-04
39GO:0004856: xylulokinase activity3.63E-04
40GO:0009496: plastoquinol--plastocyanin reductase activity3.63E-04
41GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.63E-04
42GO:0019203: carbohydrate phosphatase activity3.63E-04
43GO:0004853: uroporphyrinogen decarboxylase activity3.63E-04
44GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.63E-04
45GO:0004832: valine-tRNA ligase activity3.63E-04
46GO:0050662: coenzyme binding4.66E-04
47GO:0010297: heteropolysaccharide binding7.89E-04
48GO:0004047: aminomethyltransferase activity7.89E-04
49GO:0033201: alpha-1,4-glucan synthase activity7.89E-04
50GO:0003844: 1,4-alpha-glucan branching enzyme activity7.89E-04
51GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.89E-04
52GO:0004614: phosphoglucomutase activity7.89E-04
53GO:0008967: phosphoglycolate phosphatase activity7.89E-04
54GO:0008047: enzyme activator activity8.10E-04
55GO:0044183: protein binding involved in protein folding9.32E-04
56GO:0030267: glyoxylate reductase (NADP) activity1.28E-03
57GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.28E-03
58GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.28E-03
59GO:0043169: cation binding1.28E-03
60GO:0004373: glycogen (starch) synthase activity1.28E-03
61GO:0017150: tRNA dihydrouridine synthase activity1.28E-03
62GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.28E-03
63GO:0005504: fatty acid binding1.28E-03
64GO:0045174: glutathione dehydrogenase (ascorbate) activity1.28E-03
65GO:0043023: ribosomal large subunit binding1.84E-03
66GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.84E-03
67GO:0016491: oxidoreductase activity1.84E-03
68GO:0048487: beta-tubulin binding1.84E-03
69GO:0016149: translation release factor activity, codon specific1.84E-03
70GO:0004550: nucleoside diphosphate kinase activity1.84E-03
71GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.47E-03
72GO:0045430: chalcone isomerase activity2.47E-03
73GO:0009011: starch synthase activity2.47E-03
74GO:0019199: transmembrane receptor protein kinase activity2.47E-03
75GO:0042277: peptide binding2.47E-03
76GO:0022891: substrate-specific transmembrane transporter activity2.71E-03
77GO:0004372: glycine hydroxymethyltransferase activity3.16E-03
78GO:0016773: phosphotransferase activity, alcohol group as acceptor3.16E-03
79GO:0004040: amidase activity3.16E-03
80GO:0047134: protein-disulfide reductase activity3.20E-03
81GO:0016615: malate dehydrogenase activity3.91E-03
82GO:2001070: starch binding3.91E-03
83GO:0004130: cytochrome-c peroxidase activity3.91E-03
84GO:0004791: thioredoxin-disulfide reductase activity4.00E-03
85GO:0004601: peroxidase activity4.36E-03
86GO:0048038: quinone binding4.60E-03
87GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.71E-03
88GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.71E-03
89GO:0030060: L-malate dehydrogenase activity4.71E-03
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.24E-03
91GO:0008483: transaminase activity5.92E-03
92GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
93GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.41E-03
94GO:0015078: hydrogen ion transmembrane transporter activity7.41E-03
95GO:0004252: serine-type endopeptidase activity8.04E-03
96GO:0008236: serine-type peptidase activity8.26E-03
97GO:0003747: translation release factor activity8.41E-03
98GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.41E-03
99GO:0047617: acyl-CoA hydrolase activity9.46E-03
100GO:0005384: manganese ion transmembrane transporter activity9.46E-03
101GO:0004222: metalloendopeptidase activity9.60E-03
102GO:0000049: tRNA binding1.29E-02
103GO:0004089: carbonate dehydratase activity1.41E-02
104GO:0015095: magnesium ion transmembrane transporter activity1.41E-02
105GO:0004565: beta-galactosidase activity1.41E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity1.41E-02
107GO:0051537: 2 iron, 2 sulfur cluster binding1.55E-02
108GO:0043621: protein self-association1.55E-02
109GO:0004857: enzyme inhibitor activity1.93E-02
110GO:0004407: histone deacetylase activity1.93E-02
111GO:0030570: pectate lyase activity2.52E-02
112GO:0003756: protein disulfide isomerase activity2.67E-02
113GO:0015035: protein disulfide oxidoreductase activity2.83E-02
114GO:0005515: protein binding3.59E-02
115GO:0030170: pyridoxal phosphate binding3.81E-02
116GO:0009055: electron carrier activity4.29E-02
117GO:0008237: metallopeptidase activity4.39E-02
118GO:0005200: structural constituent of cytoskeleton4.39E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009507: chloroplast1.59E-122
6GO:0009570: chloroplast stroma1.14E-85
7GO:0009941: chloroplast envelope2.58E-71
8GO:0009535: chloroplast thylakoid membrane3.80E-68
9GO:0009534: chloroplast thylakoid6.39E-65
10GO:0009579: thylakoid5.71E-53
11GO:0009543: chloroplast thylakoid lumen4.34E-29
12GO:0031977: thylakoid lumen1.40E-22
13GO:0005840: ribosome1.40E-18
14GO:0010287: plastoglobule1.66E-14
15GO:0010319: stromule3.67E-14
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.43E-09
17GO:0009538: photosystem I reaction center1.59E-07
18GO:0009523: photosystem II1.83E-06
19GO:0009508: plastid chromosome2.58E-06
20GO:0048046: apoplast2.86E-06
21GO:0030095: chloroplast photosystem II3.42E-06
22GO:0016020: membrane3.97E-06
23GO:0009295: nucleoid4.34E-06
24GO:0009533: chloroplast stromal thylakoid8.43E-06
25GO:0009654: photosystem II oxygen evolving complex8.97E-06
26GO:0010007: magnesium chelatase complex2.08E-05
27GO:0019898: extrinsic component of membrane4.19E-05
28GO:0005960: glycine cleavage complex4.58E-05
29GO:0030076: light-harvesting complex1.20E-04
30GO:0009782: photosystem I antenna complex3.63E-04
31GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.63E-04
32GO:0009501: amyloplast4.01E-04
33GO:0009522: photosystem I4.66E-04
34GO:0000427: plastid-encoded plastid RNA polymerase complex7.89E-04
35GO:0030093: chloroplast photosystem I7.89E-04
36GO:0009706: chloroplast inner membrane9.75E-04
37GO:0000311: plastid large ribosomal subunit1.06E-03
38GO:0009528: plastid inner membrane1.28E-03
39GO:0015934: large ribosomal subunit1.48E-03
40GO:0009536: plastid1.55E-03
41GO:0022626: cytosolic ribosome2.07E-03
42GO:0042651: thylakoid membrane2.07E-03
43GO:0015935: small ribosomal subunit2.27E-03
44GO:0009532: plastid stroma2.27E-03
45GO:0009527: plastid outer membrane2.47E-03
46GO:0009517: PSII associated light-harvesting complex II2.47E-03
47GO:0009512: cytochrome b6f complex3.16E-03
48GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.91E-03
49GO:0016272: prefoldin complex4.71E-03
50GO:0009840: chloroplastic endopeptidase Clp complex4.71E-03
51GO:0031969: chloroplast membrane6.05E-03
52GO:0022625: cytosolic large ribosomal subunit6.53E-03
53GO:0005763: mitochondrial small ribosomal subunit8.41E-03
54GO:0042644: chloroplast nucleoid8.41E-03
55GO:0045298: tubulin complex8.41E-03
56GO:0000312: plastid small ribosomal subunit1.53E-02
57GO:0043234: protein complex1.80E-02
58GO:0030529: intracellular ribonucleoprotein complex4.76E-02
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Gene type



Gene DE type