GO Enrichment Analysis of Co-expressed Genes with
AT3G55280
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 2 | GO:0007530: sex determination | 0.00E+00 |
| 3 | GO:0070918: production of small RNA involved in gene silencing by RNA | 0.00E+00 |
| 4 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 5 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 6 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 7 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 8 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 9 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 10 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 11 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 12 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 13 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 14 | GO:0006384: transcription initiation from RNA polymerase III promoter | 0.00E+00 |
| 15 | GO:0006412: translation | 2.80E-176 |
| 16 | GO:0042254: ribosome biogenesis | 5.50E-67 |
| 17 | GO:0000027: ribosomal large subunit assembly | 7.06E-10 |
| 18 | GO:0006626: protein targeting to mitochondrion | 6.90E-09 |
| 19 | GO:0000028: ribosomal small subunit assembly | 9.02E-07 |
| 20 | GO:0000387: spliceosomal snRNP assembly | 3.57E-06 |
| 21 | GO:0009955: adaxial/abaxial pattern specification | 1.93E-05 |
| 22 | GO:0000398: mRNA splicing, via spliceosome | 2.39E-05 |
| 23 | GO:1902626: assembly of large subunit precursor of preribosome | 5.24E-05 |
| 24 | GO:0002181: cytoplasmic translation | 5.24E-05 |
| 25 | GO:0009735: response to cytokinin | 6.68E-05 |
| 26 | GO:0042274: ribosomal small subunit biogenesis | 1.89E-04 |
| 27 | GO:0006820: anion transport | 2.08E-04 |
| 28 | GO:0031167: rRNA methylation | 2.86E-04 |
| 29 | GO:0006364: rRNA processing | 3.54E-04 |
| 30 | GO:0045040: protein import into mitochondrial outer membrane | 4.00E-04 |
| 31 | GO:0030150: protein import into mitochondrial matrix | 4.60E-04 |
| 32 | GO:0006458: 'de novo' protein folding | 5.32E-04 |
| 33 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.04E-04 |
| 34 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.04E-04 |
| 35 | GO:0032365: intracellular lipid transport | 6.04E-04 |
| 36 | GO:0006407: rRNA export from nucleus | 6.04E-04 |
| 37 | GO:0031120: snRNA pseudouridine synthesis | 6.04E-04 |
| 38 | GO:0031118: rRNA pseudouridine synthesis | 6.04E-04 |
| 39 | GO:0015801: aromatic amino acid transport | 6.04E-04 |
| 40 | GO:0030490: maturation of SSU-rRNA | 6.04E-04 |
| 41 | GO:0009651: response to salt stress | 8.63E-04 |
| 42 | GO:0001510: RNA methylation | 1.03E-03 |
| 43 | GO:0010197: polar nucleus fusion | 1.11E-03 |
| 44 | GO:0098656: anion transmembrane transport | 1.23E-03 |
| 45 | GO:0010198: synergid death | 1.30E-03 |
| 46 | GO:0009967: positive regulation of signal transduction | 1.30E-03 |
| 47 | GO:0015786: UDP-glucose transport | 1.30E-03 |
| 48 | GO:0045905: positive regulation of translational termination | 1.30E-03 |
| 49 | GO:0045901: positive regulation of translational elongation | 1.30E-03 |
| 50 | GO:0045041: protein import into mitochondrial intermembrane space | 1.30E-03 |
| 51 | GO:0048569: post-embryonic animal organ development | 1.30E-03 |
| 52 | GO:0006452: translational frameshifting | 1.30E-03 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 1.44E-03 |
| 54 | GO:0009150: purine ribonucleotide metabolic process | 2.14E-03 |
| 55 | GO:0045793: positive regulation of cell size | 2.14E-03 |
| 56 | GO:0015783: GDP-fucose transport | 2.14E-03 |
| 57 | GO:0034227: tRNA thio-modification | 2.14E-03 |
| 58 | GO:0042256: mature ribosome assembly | 2.14E-03 |
| 59 | GO:0006446: regulation of translational initiation | 2.89E-03 |
| 60 | GO:0006414: translational elongation | 2.95E-03 |
| 61 | GO:0006241: CTP biosynthetic process | 3.10E-03 |
| 62 | GO:0072334: UDP-galactose transmembrane transport | 3.10E-03 |
| 63 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 3.10E-03 |
| 64 | GO:0006165: nucleoside diphosphate phosphorylation | 3.10E-03 |
| 65 | GO:0006228: UTP biosynthetic process | 3.10E-03 |
| 66 | GO:0006164: purine nucleotide biosynthetic process | 3.10E-03 |
| 67 | GO:0006168: adenine salvage | 3.10E-03 |
| 68 | GO:0009558: embryo sac cellularization | 3.10E-03 |
| 69 | GO:0046513: ceramide biosynthetic process | 3.10E-03 |
| 70 | GO:0032877: positive regulation of DNA endoreduplication | 3.10E-03 |
| 71 | GO:0007004: telomere maintenance via telomerase | 3.10E-03 |
| 72 | GO:0006166: purine ribonucleoside salvage | 3.10E-03 |
| 73 | GO:0070301: cellular response to hydrogen peroxide | 3.10E-03 |
| 74 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.10E-03 |
| 75 | GO:0006289: nucleotide-excision repair | 4.02E-03 |
| 76 | GO:0006183: GTP biosynthetic process | 4.19E-03 |
| 77 | GO:0010363: regulation of plant-type hypersensitive response | 4.19E-03 |
| 78 | GO:1900864: mitochondrial RNA modification | 4.19E-03 |
| 79 | GO:0051781: positive regulation of cell division | 4.19E-03 |
| 80 | GO:0061077: chaperone-mediated protein folding | 4.89E-03 |
| 81 | GO:0019408: dolichol biosynthetic process | 5.38E-03 |
| 82 | GO:1902183: regulation of shoot apical meristem development | 5.38E-03 |
| 83 | GO:0044209: AMP salvage | 5.38E-03 |
| 84 | GO:0040007: growth | 5.85E-03 |
| 85 | GO:0006413: translational initiation | 6.54E-03 |
| 86 | GO:0000741: karyogamy | 6.67E-03 |
| 87 | GO:0001731: formation of translation preinitiation complex | 6.67E-03 |
| 88 | GO:0016070: RNA metabolic process | 6.67E-03 |
| 89 | GO:0000470: maturation of LSU-rRNA | 6.67E-03 |
| 90 | GO:0009965: leaf morphogenesis | 7.16E-03 |
| 91 | GO:0008033: tRNA processing | 7.48E-03 |
| 92 | GO:1901001: negative regulation of response to salt stress | 8.07E-03 |
| 93 | GO:0000911: cytokinesis by cell plate formation | 8.07E-03 |
| 94 | GO:0042026: protein refolding | 8.07E-03 |
| 95 | GO:0000245: spliceosomal complex assembly | 8.07E-03 |
| 96 | GO:0009648: photoperiodism | 8.07E-03 |
| 97 | GO:0010183: pollen tube guidance | 9.32E-03 |
| 98 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 9.56E-03 |
| 99 | GO:0009645: response to low light intensity stimulus | 9.56E-03 |
| 100 | GO:0006635: fatty acid beta-oxidation | 9.99E-03 |
| 101 | GO:0001522: pseudouridine synthesis | 1.11E-02 |
| 102 | GO:0009690: cytokinin metabolic process | 1.11E-02 |
| 103 | GO:0009409: response to cold | 1.23E-02 |
| 104 | GO:0001558: regulation of cell growth | 1.28E-02 |
| 105 | GO:0006526: arginine biosynthetic process | 1.28E-02 |
| 106 | GO:0044030: regulation of DNA methylation | 1.28E-02 |
| 107 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.28E-02 |
| 108 | GO:0009245: lipid A biosynthetic process | 1.46E-02 |
| 109 | GO:0006189: 'de novo' IMP biosynthetic process | 1.46E-02 |
| 110 | GO:0048589: developmental growth | 1.46E-02 |
| 111 | GO:0009060: aerobic respiration | 1.46E-02 |
| 112 | GO:0015780: nucleotide-sugar transport | 1.46E-02 |
| 113 | GO:0007338: single fertilization | 1.46E-02 |
| 114 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.64E-02 |
| 115 | GO:0006913: nucleocytoplasmic transport | 2.03E-02 |
| 116 | GO:0015770: sucrose transport | 2.03E-02 |
| 117 | GO:0010015: root morphogenesis | 2.03E-02 |
| 118 | GO:0016925: protein sumoylation | 2.24E-02 |
| 119 | GO:0006790: sulfur compound metabolic process | 2.24E-02 |
| 120 | GO:0010102: lateral root morphogenesis | 2.45E-02 |
| 121 | GO:0010628: positive regulation of gene expression | 2.45E-02 |
| 122 | GO:0015031: protein transport | 2.61E-02 |
| 123 | GO:0048467: gynoecium development | 2.67E-02 |
| 124 | GO:0008283: cell proliferation | 3.11E-02 |
| 125 | GO:0006487: protein N-linked glycosylation | 3.37E-02 |
| 126 | GO:0009116: nucleoside metabolic process | 3.37E-02 |
| 127 | GO:0008380: RNA splicing | 3.53E-02 |
| 128 | GO:0051302: regulation of cell division | 3.61E-02 |
| 129 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.77E-02 |
| 130 | GO:0006306: DNA methylation | 3.87E-02 |
| 131 | GO:0003333: amino acid transmembrane transport | 3.87E-02 |
| 132 | GO:0051260: protein homooligomerization | 3.87E-02 |
| 133 | GO:0010431: seed maturation | 3.87E-02 |
| 134 | GO:0007005: mitochondrion organization | 4.12E-02 |
| 135 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.33E-02 |
| 136 | GO:0071215: cellular response to abscisic acid stimulus | 4.39E-02 |
| 137 | GO:0010584: pollen exine formation | 4.65E-02 |
| 138 | GO:0010089: xylem development | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:0004055: argininosuccinate synthase activity | 0.00E+00 |
| 4 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 5 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 1.96E-221 |
| 7 | GO:0003729: mRNA binding | 1.34E-41 |
| 8 | GO:0019843: rRNA binding | 2.50E-16 |
| 9 | GO:0003723: RNA binding | 7.55E-06 |
| 10 | GO:0030515: snoRNA binding | 3.01E-05 |
| 11 | GO:0015288: porin activity | 4.40E-05 |
| 12 | GO:0008649: rRNA methyltransferase activity | 5.24E-05 |
| 13 | GO:0008308: voltage-gated anion channel activity | 6.15E-05 |
| 14 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.96E-05 |
| 15 | GO:0008097: 5S rRNA binding | 1.10E-04 |
| 16 | GO:0044183: protein binding involved in protein folding | 1.70E-04 |
| 17 | GO:0001056: RNA polymerase III activity | 2.08E-04 |
| 18 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 6.04E-04 |
| 19 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 6.04E-04 |
| 20 | GO:0005080: protein kinase C binding | 6.04E-04 |
| 21 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 6.04E-04 |
| 22 | GO:0035614: snRNA stem-loop binding | 6.04E-04 |
| 23 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 6.04E-04 |
| 24 | GO:0043022: ribosome binding | 8.46E-04 |
| 25 | GO:0032934: sterol binding | 1.30E-03 |
| 26 | GO:0005078: MAP-kinase scaffold activity | 1.30E-03 |
| 27 | GO:0030619: U1 snRNA binding | 1.30E-03 |
| 28 | GO:0050291: sphingosine N-acyltransferase activity | 1.30E-03 |
| 29 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.30E-03 |
| 30 | GO:0070034: telomerase RNA binding | 1.30E-03 |
| 31 | GO:0001055: RNA polymerase II activity | 1.45E-03 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.83E-03 |
| 33 | GO:0001054: RNA polymerase I activity | 1.97E-03 |
| 34 | GO:0070181: small ribosomal subunit rRNA binding | 2.14E-03 |
| 35 | GO:0005457: GDP-fucose transmembrane transporter activity | 2.14E-03 |
| 36 | GO:0070180: large ribosomal subunit rRNA binding | 2.14E-03 |
| 37 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 2.14E-03 |
| 38 | GO:0015266: protein channel activity | 2.56E-03 |
| 39 | GO:0003999: adenine phosphoribosyltransferase activity | 3.10E-03 |
| 40 | GO:0005460: UDP-glucose transmembrane transporter activity | 3.10E-03 |
| 41 | GO:0004550: nucleoside diphosphate kinase activity | 3.10E-03 |
| 42 | GO:0047627: adenylylsulfatase activity | 3.10E-03 |
| 43 | GO:0051082: unfolded protein binding | 3.15E-03 |
| 44 | GO:0070628: proteasome binding | 4.19E-03 |
| 45 | GO:0010011: auxin binding | 4.19E-03 |
| 46 | GO:0003746: translation elongation factor activity | 4.45E-03 |
| 47 | GO:0004298: threonine-type endopeptidase activity | 4.89E-03 |
| 48 | GO:0005459: UDP-galactose transmembrane transporter activity | 5.38E-03 |
| 49 | GO:0045547: dehydrodolichyl diphosphate synthase activity | 5.38E-03 |
| 50 | GO:0005275: amine transmembrane transporter activity | 5.38E-03 |
| 51 | GO:0031386: protein tag | 5.38E-03 |
| 52 | GO:0031593: polyubiquitin binding | 6.67E-03 |
| 53 | GO:0031177: phosphopantetheine binding | 6.67E-03 |
| 54 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 6.67E-03 |
| 55 | GO:0000035: acyl binding | 8.07E-03 |
| 56 | GO:0051920: peroxiredoxin activity | 8.07E-03 |
| 57 | GO:0003743: translation initiation factor activity | 9.23E-03 |
| 58 | GO:0042162: telomeric DNA binding | 9.56E-03 |
| 59 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 9.56E-03 |
| 60 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 9.56E-03 |
| 61 | GO:0008235: metalloexopeptidase activity | 9.56E-03 |
| 62 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.11E-02 |
| 63 | GO:0016209: antioxidant activity | 1.11E-02 |
| 64 | GO:0008515: sucrose transmembrane transporter activity | 2.03E-02 |
| 65 | GO:0008794: arsenate reductase (glutaredoxin) activity | 2.03E-02 |
| 66 | GO:0003697: single-stranded DNA binding | 2.41E-02 |
| 67 | GO:0031072: heat shock protein binding | 2.45E-02 |
| 68 | GO:0051119: sugar transmembrane transporter activity | 2.90E-02 |
| 69 | GO:0043130: ubiquitin binding | 3.37E-02 |
| 70 | GO:0051087: chaperone binding | 3.61E-02 |
| 71 | GO:0008514: organic anion transmembrane transporter activity | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0043186: P granule | 0.00E+00 |
| 4 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 5 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 6 | GO:0005840: ribosome | 1.66E-149 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 1.60E-128 |
| 8 | GO:0022626: cytosolic ribosome | 2.93E-125 |
| 9 | GO:0022627: cytosolic small ribosomal subunit | 3.21E-92 |
| 10 | GO:0005730: nucleolus | 7.08E-51 |
| 11 | GO:0005829: cytosol | 4.11E-39 |
| 12 | GO:0005737: cytoplasm | 2.54E-38 |
| 13 | GO:0009506: plasmodesma | 6.16E-27 |
| 14 | GO:0015934: large ribosomal subunit | 5.97E-21 |
| 15 | GO:0005774: vacuolar membrane | 4.13E-16 |
| 16 | GO:0016020: membrane | 1.69E-14 |
| 17 | GO:0015935: small ribosomal subunit | 4.69E-13 |
| 18 | GO:0005773: vacuole | 7.08E-10 |
| 19 | GO:0005742: mitochondrial outer membrane translocase complex | 2.01E-08 |
| 20 | GO:0009507: chloroplast | 9.94E-08 |
| 21 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.43E-07 |
| 22 | GO:0005618: cell wall | 5.92E-07 |
| 23 | GO:0015030: Cajal body | 3.57E-06 |
| 24 | GO:0019013: viral nucleocapsid | 1.33E-05 |
| 25 | GO:0005741: mitochondrial outer membrane | 5.13E-05 |
| 26 | GO:0034719: SMN-Sm protein complex | 5.24E-05 |
| 27 | GO:0046930: pore complex | 6.15E-05 |
| 28 | GO:0005685: U1 snRNP | 8.25E-05 |
| 29 | GO:0005666: DNA-directed RNA polymerase III complex | 1.08E-04 |
| 30 | GO:0071011: precatalytic spliceosome | 1.08E-04 |
| 31 | GO:0071013: catalytic step 2 spliceosome | 1.70E-04 |
| 32 | GO:0005682: U5 snRNP | 1.89E-04 |
| 33 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.08E-04 |
| 34 | GO:0005687: U4 snRNP | 2.86E-04 |
| 35 | GO:0097526: spliceosomal tri-snRNP complex | 2.86E-04 |
| 36 | GO:0031428: box C/D snoRNP complex | 4.00E-04 |
| 37 | GO:0000419: DNA-directed RNA polymerase V complex | 4.01E-04 |
| 38 | GO:0005681: spliceosomal complex | 4.84E-04 |
| 39 | GO:0005689: U12-type spliceosomal complex | 5.32E-04 |
| 40 | GO:0030686: 90S preribosome | 6.04E-04 |
| 41 | GO:0005886: plasma membrane | 6.22E-04 |
| 42 | GO:0005736: DNA-directed RNA polymerase I complex | 1.23E-03 |
| 43 | GO:0071010: prespliceosome | 1.30E-03 |
| 44 | GO:0035145: exon-exon junction complex | 1.30E-03 |
| 45 | GO:0005697: telomerase holoenzyme complex | 1.30E-03 |
| 46 | GO:0005686: U2 snRNP | 1.70E-03 |
| 47 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.70E-03 |
| 48 | GO:0000502: proteasome complex | 1.83E-03 |
| 49 | GO:0034715: pICln-Sm protein complex | 2.14E-03 |
| 50 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.14E-03 |
| 51 | GO:0000439: core TFIIH complex | 2.14E-03 |
| 52 | GO:0032040: small-subunit processome | 2.25E-03 |
| 53 | GO:1990726: Lsm1-7-Pat1 complex | 3.10E-03 |
| 54 | GO:0031429: box H/ACA snoRNP complex | 3.10E-03 |
| 55 | GO:0005758: mitochondrial intermembrane space | 4.02E-03 |
| 56 | GO:0005839: proteasome core complex | 4.89E-03 |
| 57 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 6.37E-03 |
| 58 | GO:0016282: eukaryotic 43S preinitiation complex | 6.67E-03 |
| 59 | GO:0000243: commitment complex | 6.67E-03 |
| 60 | GO:0005762: mitochondrial large ribosomal subunit | 8.07E-03 |
| 61 | GO:0033290: eukaryotic 48S preinitiation complex | 8.07E-03 |
| 62 | GO:0016272: prefoldin complex | 8.07E-03 |
| 63 | GO:0005743: mitochondrial inner membrane | 9.79E-03 |
| 64 | GO:0005688: U6 snRNP | 1.11E-02 |
| 65 | GO:0071004: U2-type prespliceosome | 1.11E-02 |
| 66 | GO:0045273: respiratory chain complex II | 1.11E-02 |
| 67 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.11E-02 |
| 68 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 1.28E-02 |
| 69 | GO:0030529: intracellular ribonucleoprotein complex | 1.45E-02 |
| 70 | GO:0016604: nuclear body | 1.64E-02 |
| 71 | GO:0005740: mitochondrial envelope | 1.83E-02 |
| 72 | GO:0005654: nucleoplasm | 1.83E-02 |
| 73 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.03E-02 |
| 74 | GO:0048471: perinuclear region of cytoplasm | 2.03E-02 |
| 75 | GO:0031307: integral component of mitochondrial outer membrane | 2.24E-02 |
| 76 | GO:0009536: plastid | 2.43E-02 |
| 77 | GO:0009508: plastid chromosome | 2.45E-02 |
| 78 | GO:0005750: mitochondrial respiratory chain complex III | 2.67E-02 |
| 79 | GO:0070469: respiratory chain | 3.61E-02 |