co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
4	GO:0071266: 'de novo' L-methionine biosynthetic process	1.13E-05
5	GO:0019346: transsulfuration	1.13E-05
6	GO:0019343: cysteine biosynthetic process via cystathionine	1.13E-05
7	GO:0006996: organelle organization	3.00E-05
8	GO:0016122: xanthophyll metabolic process	3.00E-05
9	GO:0006013: mannose metabolic process	5.40E-05
10	GO:0008652: cellular amino acid biosynthetic process	5.40E-05
11	GO:0006696: ergosterol biosynthetic process	5.40E-05
12	GO:0046653: tetrahydrofolate metabolic process	8.23E-05
13	GO:0033014: tetrapyrrole biosynthetic process	8.23E-05
14	GO:0009067: aspartate family amino acid biosynthetic process	8.23E-05
15	GO:0010117: photoprotection	1.49E-04
16	GO:0009229: thiamine diphosphate biosynthetic process	1.49E-04
17	GO:0009228: thiamine biosynthetic process	1.86E-04
18	GO:0009396: folic acid-containing compound biosynthetic process	2.66E-04
19	GO:0015693: magnesium ion transport	2.66E-04
20	GO:0001522: pseudouridine synthesis	3.08E-04
21	GO:0044030: regulation of DNA methylation	3.52E-04
22	GO:0098656: anion transmembrane transport	3.97E-04
23	GO:0035999: tetrahydrofolate interconversion	4.44E-04
24	GO:0006782: protoporphyrinogen IX biosynthetic process	4.91E-04
25	GO:0009688: abscisic acid biosynthetic process	4.91E-04
26	GO:0045037: protein import into chloroplast stroma	5.89E-04
27	GO:0006487: protein N-linked glycosylation	8.54E-04
28	GO:0006730: one-carbon metabolic process	1.02E-03
29	GO:0016117: carotenoid biosynthetic process	1.20E-03
30	GO:0010051: xylem and phloem pattern formation	1.26E-03
31	GO:0010087: phloem or xylem histogenesis	1.26E-03
32	GO:0015995: chlorophyll biosynthetic process	2.17E-03
33	GO:0009853: photorespiration	2.72E-03
34	GO:0055114: oxidation-reduction process	2.78E-03
35	GO:0006897: endocytosis	3.06E-03
36	GO:0009965: leaf morphogenesis	3.50E-03
37	GO:0009658: chloroplast organization	9.96E-03
38	GO:0006629: lipid metabolic process	1.53E-02
39	GO:0009735: response to cytokinin	2.15E-02
40	GO:0055085: transmembrane transport	2.72E-02
41	GO:0009733: response to auxin	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
3	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
4	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0004121: cystathionine beta-lyase activity	1.13E-05
7	GO:0051996: squalene synthase activity	1.13E-05
8	GO:0004123: cystathionine gamma-lyase activity	1.13E-05
9	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.00E-05
10	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.00E-05
11	GO:0004109: coproporphyrinogen oxidase activity	3.00E-05
12	GO:0004412: homoserine dehydrogenase activity	3.00E-05
13	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.00E-05
14	GO:0004180: carboxypeptidase activity	5.40E-05
15	GO:0004848: ureidoglycolate hydrolase activity	5.40E-05
16	GO:0003962: cystathionine gamma-synthase activity	5.40E-05
17	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	8.23E-05
18	GO:0004559: alpha-mannosidase activity	2.25E-04
19	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.97E-04
20	GO:0071949: FAD binding	3.97E-04
21	GO:0009982: pseudouridine synthase activity	6.40E-04
22	GO:0005315: inorganic phosphate transmembrane transporter activity	6.40E-04
23	GO:0015095: magnesium ion transmembrane transporter activity	6.40E-04
24	GO:0008514: organic anion transmembrane transporter activity	1.14E-03
25	GO:0008236: serine-type peptidase activity	2.25E-03
26	GO:0005096: GTPase activator activity	2.40E-03
27	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.89E-03
28	GO:0035091: phosphatidylinositol binding	3.41E-03
29	GO:0016874: ligase activity	4.83E-03
30	GO:0030170: pyridoxal phosphate binding	6.31E-03
31	GO:0015144: carbohydrate transmembrane transporter activity	6.64E-03
32	GO:0005351: sugar:proton symporter activity	7.22E-03
33	GO:0008270: zinc ion binding	8.46E-03
34	GO:0030246: carbohydrate binding	2.84E-02
35	GO:0003824: catalytic activity	4.06E-02
36	GO:0016491: oxidoreductase activity	4.62E-02
37	GO:0004842: ubiquitin-protein transferase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0031969: chloroplast membrane	1.59E-06
2	GO:0009517: PSII associated light-harvesting complex II	1.14E-04
3	GO:0030140: trans-Golgi network transport vesicle	1.86E-04
4	GO:0009507: chloroplast	3.43E-04
5	GO:0009707: chloroplast outer membrane	2.32E-03
6	GO:0005829: cytosol	2.36E-03
7	GO:0031966: mitochondrial membrane	3.77E-03
8	GO:0009941: chloroplast envelope	3.97E-03
9	GO:0010287: plastoglobule	5.66E-03
10	GO:0009536: plastid	5.85E-03
11	GO:0009570: chloroplast stroma	6.06E-03
12	GO:0005794: Golgi apparatus	2.17E-02
13	GO:0005773: vacuole	2.55E-02
14	GO:0005802: trans-Golgi network	3.21E-02
15	GO:0005768: endosome	3.52E-02
16	GO:0009505: plant-type cell wall	4.46E-02