GO Enrichment Analysis of Co-expressed Genes with
AT3G55250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 3 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 4 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 5 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 6 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 7 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.13E-07 |
| 8 | GO:0090391: granum assembly | 1.95E-06 |
| 9 | GO:0015979: photosynthesis | 3.92E-06 |
| 10 | GO:0048564: photosystem I assembly | 5.57E-05 |
| 11 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 9.88E-05 |
| 12 | GO:0006419: alanyl-tRNA aminoacylation | 9.88E-05 |
| 13 | GO:0009443: pyridoxal 5'-phosphate salvage | 9.88E-05 |
| 14 | GO:0000481: maturation of 5S rRNA | 9.88E-05 |
| 15 | GO:1902458: positive regulation of stomatal opening | 9.88E-05 |
| 16 | GO:0034337: RNA folding | 9.88E-05 |
| 17 | GO:0006435: threonyl-tRNA aminoacylation | 2.32E-04 |
| 18 | GO:0019752: carboxylic acid metabolic process | 2.32E-04 |
| 19 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.32E-04 |
| 20 | GO:0009793: embryo development ending in seed dormancy | 3.00E-04 |
| 21 | GO:0009306: protein secretion | 4.98E-04 |
| 22 | GO:0009102: biotin biosynthetic process | 5.54E-04 |
| 23 | GO:0090307: mitotic spindle assembly | 5.54E-04 |
| 24 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 5.54E-04 |
| 25 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.54E-04 |
| 26 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.54E-04 |
| 27 | GO:0009765: photosynthesis, light harvesting | 7.37E-04 |
| 28 | GO:0006221: pyrimidine nucleotide biosynthetic process | 7.37E-04 |
| 29 | GO:0031122: cytoplasmic microtubule organization | 7.37E-04 |
| 30 | GO:0006564: L-serine biosynthetic process | 9.32E-04 |
| 31 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.32E-04 |
| 32 | GO:0010027: thylakoid membrane organization | 1.09E-03 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 1.14E-03 |
| 34 | GO:0009643: photosynthetic acclimation | 1.14E-03 |
| 35 | GO:0015995: chlorophyll biosynthetic process | 1.27E-03 |
| 36 | GO:0015977: carbon fixation | 1.36E-03 |
| 37 | GO:1901259: chloroplast rRNA processing | 1.36E-03 |
| 38 | GO:0010189: vitamin E biosynthetic process | 1.36E-03 |
| 39 | GO:0018298: protein-chromophore linkage | 1.40E-03 |
| 40 | GO:0009772: photosynthetic electron transport in photosystem II | 1.59E-03 |
| 41 | GO:0010196: nonphotochemical quenching | 1.59E-03 |
| 42 | GO:0006400: tRNA modification | 1.59E-03 |
| 43 | GO:0009853: photorespiration | 1.77E-03 |
| 44 | GO:0009658: chloroplast organization | 1.77E-03 |
| 45 | GO:0006605: protein targeting | 1.84E-03 |
| 46 | GO:0032508: DNA duplex unwinding | 1.84E-03 |
| 47 | GO:2000070: regulation of response to water deprivation | 1.84E-03 |
| 48 | GO:0009231: riboflavin biosynthetic process | 1.84E-03 |
| 49 | GO:0017004: cytochrome complex assembly | 2.10E-03 |
| 50 | GO:0080167: response to karrikin | 2.32E-03 |
| 51 | GO:0000373: Group II intron splicing | 2.37E-03 |
| 52 | GO:0006949: syncytium formation | 2.95E-03 |
| 53 | GO:0009773: photosynthetic electron transport in photosystem I | 3.25E-03 |
| 54 | GO:0045037: protein import into chloroplast stroma | 3.57E-03 |
| 55 | GO:0009767: photosynthetic electron transport chain | 3.89E-03 |
| 56 | GO:0010020: chloroplast fission | 4.22E-03 |
| 57 | GO:0019253: reductive pentose-phosphate cycle | 4.22E-03 |
| 58 | GO:0006863: purine nucleobase transport | 4.92E-03 |
| 59 | GO:0019953: sexual reproduction | 5.65E-03 |
| 60 | GO:0019915: lipid storage | 6.03E-03 |
| 61 | GO:0055114: oxidation-reduction process | 6.30E-03 |
| 62 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.82E-03 |
| 63 | GO:0009625: response to insect | 6.82E-03 |
| 64 | GO:0048868: pollen tube development | 8.50E-03 |
| 65 | GO:0015986: ATP synthesis coupled proton transport | 8.94E-03 |
| 66 | GO:0008654: phospholipid biosynthetic process | 9.39E-03 |
| 67 | GO:0002229: defense response to oomycetes | 9.85E-03 |
| 68 | GO:0010193: response to ozone | 9.85E-03 |
| 69 | GO:0019761: glucosinolate biosynthetic process | 1.03E-02 |
| 70 | GO:0009828: plant-type cell wall loosening | 1.13E-02 |
| 71 | GO:0016311: dephosphorylation | 1.49E-02 |
| 72 | GO:0009817: defense response to fungus, incompatible interaction | 1.54E-02 |
| 73 | GO:0010218: response to far red light | 1.65E-02 |
| 74 | GO:0009867: jasmonic acid mediated signaling pathway | 1.82E-02 |
| 75 | GO:0009637: response to blue light | 1.82E-02 |
| 76 | GO:0010114: response to red light | 2.18E-02 |
| 77 | GO:0009664: plant-type cell wall organization | 2.57E-02 |
| 78 | GO:0010224: response to UV-B | 2.77E-02 |
| 79 | GO:0009409: response to cold | 2.81E-02 |
| 80 | GO:0009553: embryo sac development | 3.39E-02 |
| 81 | GO:0009735: response to cytokinin | 3.43E-02 |
| 82 | GO:0009790: embryo development | 4.54E-02 |
| 83 | GO:0055085: transmembrane transport | 4.74E-02 |
| 84 | GO:0006413: translational initiation | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 2 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 3 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 7 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 8 | GO:0043495: protein anchor | 8.78E-06 |
| 9 | GO:0019899: enzyme binding | 4.27E-05 |
| 10 | GO:0004813: alanine-tRNA ligase activity | 9.88E-05 |
| 11 | GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity | 9.88E-05 |
| 12 | GO:0047911: galacturan 1,4-alpha-galacturonidase activity | 9.88E-05 |
| 13 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.32E-04 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 2.32E-04 |
| 15 | GO:0004829: threonine-tRNA ligase activity | 2.32E-04 |
| 16 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.32E-04 |
| 17 | GO:0004751: ribose-5-phosphate isomerase activity | 3.86E-04 |
| 18 | GO:0070402: NADPH binding | 3.86E-04 |
| 19 | GO:0016491: oxidoreductase activity | 3.88E-04 |
| 20 | GO:0022891: substrate-specific transmembrane transporter activity | 4.58E-04 |
| 21 | GO:0009041: uridylate kinase activity | 5.54E-04 |
| 22 | GO:0016984: ribulose-bisphosphate carboxylase activity | 5.54E-04 |
| 23 | GO:0019843: rRNA binding | 6.91E-04 |
| 24 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.37E-04 |
| 25 | GO:0008453: alanine-glyoxylate transaminase activity | 7.37E-04 |
| 26 | GO:0043015: gamma-tubulin binding | 7.37E-04 |
| 27 | GO:0051011: microtubule minus-end binding | 9.32E-04 |
| 28 | GO:0003959: NADPH dehydrogenase activity | 9.32E-04 |
| 29 | GO:0016597: amino acid binding | 1.03E-03 |
| 30 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.14E-03 |
| 31 | GO:0042578: phosphoric ester hydrolase activity | 1.14E-03 |
| 32 | GO:0016168: chlorophyll binding | 1.15E-03 |
| 33 | GO:0015631: tubulin binding | 1.36E-03 |
| 34 | GO:0042802: identical protein binding | 1.38E-03 |
| 35 | GO:0004033: aldo-keto reductase (NADP) activity | 1.84E-03 |
| 36 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.45E-03 |
| 37 | GO:0000049: tRNA binding | 3.57E-03 |
| 38 | GO:0005528: FK506 binding | 5.28E-03 |
| 39 | GO:0005345: purine nucleobase transmembrane transporter activity | 5.65E-03 |
| 40 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 8.50E-03 |
| 41 | GO:0048038: quinone binding | 9.85E-03 |
| 42 | GO:0005200: structural constituent of cytoskeleton | 1.18E-02 |
| 43 | GO:0003735: structural constituent of ribosome | 1.29E-02 |
| 44 | GO:0003723: RNA binding | 1.29E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.54E-02 |
| 46 | GO:0003993: acid phosphatase activity | 1.88E-02 |
| 47 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.00E-02 |
| 48 | GO:0009055: electron carrier activity | 2.27E-02 |
| 49 | GO:0005198: structural molecule activity | 2.37E-02 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.44E-02 |
| 51 | GO:0051287: NAD binding | 2.50E-02 |
| 52 | GO:0045735: nutrient reservoir activity | 3.04E-02 |
| 53 | GO:0004650: polygalacturonase activity | 3.25E-02 |
| 54 | GO:0008565: protein transporter activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.37E-40 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.84E-23 |
| 4 | GO:0009579: thylakoid | 7.73E-11 |
| 5 | GO:0009570: chloroplast stroma | 3.47E-10 |
| 6 | GO:0009534: chloroplast thylakoid | 3.07E-08 |
| 7 | GO:0009941: chloroplast envelope | 4.07E-08 |
| 8 | GO:0042651: thylakoid membrane | 1.11E-05 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 6.79E-05 |
| 10 | GO:0009515: granal stacked thylakoid | 9.88E-05 |
| 11 | GO:0030095: chloroplast photosystem II | 2.25E-04 |
| 12 | GO:0008274: gamma-tubulin ring complex | 2.32E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 3.49E-04 |
| 14 | GO:0031969: chloroplast membrane | 3.63E-04 |
| 15 | GO:0009573: chloroplast ribulose bisphosphate carboxylase complex | 3.86E-04 |
| 16 | GO:0033281: TAT protein transport complex | 3.86E-04 |
| 17 | GO:0000923: equatorial microtubule organizing center | 5.54E-04 |
| 18 | GO:0042646: plastid nucleoid | 5.54E-04 |
| 19 | GO:0009523: photosystem II | 7.16E-04 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.14E-03 |
| 21 | GO:0009538: photosystem I reaction center | 1.84E-03 |
| 22 | GO:0031977: thylakoid lumen | 2.09E-03 |
| 23 | GO:0009539: photosystem II reaction center | 2.10E-03 |
| 24 | GO:0042644: chloroplast nucleoid | 2.37E-03 |
| 25 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-03 |
| 26 | GO:0000922: spindle pole | 2.37E-03 |
| 27 | GO:0016020: membrane | 2.43E-03 |
| 28 | GO:0012511: monolayer-surrounded lipid storage body | 3.25E-03 |
| 29 | GO:0032040: small-subunit processome | 3.57E-03 |
| 30 | GO:0009508: plastid chromosome | 3.89E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 4.31E-03 |
| 32 | GO:0005840: ribosome | 4.89E-03 |
| 33 | GO:0010287: plastoglobule | 5.10E-03 |
| 34 | GO:0009532: plastid stroma | 6.03E-03 |
| 35 | GO:0019898: extrinsic component of membrane | 9.39E-03 |
| 36 | GO:0010319: stromule | 1.18E-02 |
| 37 | GO:0009295: nucleoid | 1.18E-02 |
| 38 | GO:0005874: microtubule | 1.38E-02 |
| 39 | GO:0015934: large ribosomal subunit | 1.71E-02 |
| 40 | GO:0005623: cell | 4.15E-02 |