co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0015727: lactate transport	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0090706: specification of plant organ position	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0048507: meristem development	4.68E-06
10	GO:0010158: abaxial cell fate specification	4.05E-05
11	GO:0043953: protein transport by the Tat complex	1.82E-04
12	GO:0060261: positive regulation of transcription initiation from RNA polymerase II promoter	1.82E-04
13	GO:0065002: intracellular protein transmembrane transport	1.82E-04
14	GO:0043007: maintenance of rDNA	1.82E-04
15	GO:0010450: inflorescence meristem growth	1.82E-04
16	GO:0009773: photosynthetic electron transport in photosystem I	3.54E-04
17	GO:0010582: floral meristem determinacy	4.06E-04
18	GO:0006741: NADP biosynthetic process	4.10E-04
19	GO:0006521: regulation of cellular amino acid metabolic process	4.10E-04
20	GO:0080181: lateral root branching	4.10E-04
21	GO:0009405: pathogenesis	6.69E-04
22	GO:0006954: inflammatory response	6.69E-04
23	GO:0005977: glycogen metabolic process	6.69E-04
24	GO:0045165: cell fate commitment	6.69E-04
25	GO:0019674: NAD metabolic process	6.69E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.55E-04
27	GO:0009650: UV protection	9.55E-04
28	GO:1901332: negative regulation of lateral root development	9.55E-04
29	GO:0050482: arachidonic acid secretion	9.55E-04
30	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.55E-04
31	GO:0019363: pyridine nucleotide biosynthetic process	9.55E-04
32	GO:0007231: osmosensory signaling pathway	9.55E-04
33	GO:0006552: leucine catabolic process	1.27E-03
34	GO:0033500: carbohydrate homeostasis	1.27E-03
35	GO:0010021: amylopectin biosynthetic process	1.27E-03
36	GO:0022622: root system development	1.27E-03
37	GO:0009740: gibberellic acid mediated signaling pathway	1.37E-03
38	GO:1902183: regulation of shoot apical meristem development	1.61E-03
39	GO:1902456: regulation of stomatal opening	1.98E-03
40	GO:0003006: developmental process involved in reproduction	1.98E-03
41	GO:0042549: photosystem II stabilization	1.98E-03
42	GO:0010027: thylakoid membrane organization	2.46E-03
43	GO:0010050: vegetative phase change	2.80E-03
44	GO:0022904: respiratory electron transport chain	2.80E-03
45	GO:0032880: regulation of protein localization	2.80E-03
46	GO:0005975: carbohydrate metabolic process	2.81E-03
47	GO:0006353: DNA-templated transcription, termination	3.24E-03
48	GO:0030091: protein repair	3.24E-03
49	GO:0009850: auxin metabolic process	3.24E-03
50	GO:0006605: protein targeting	3.24E-03
51	GO:0010492: maintenance of shoot apical meristem identity	3.24E-03
52	GO:0006644: phospholipid metabolic process	3.24E-03
53	GO:0010093: specification of floral organ identity	3.71E-03
54	GO:2000024: regulation of leaf development	4.20E-03
55	GO:0048589: developmental growth	4.20E-03
56	GO:0010205: photoinhibition	4.71E-03
57	GO:0009826: unidimensional cell growth	4.91E-03
58	GO:0009640: photomorphogenesis	5.21E-03
59	GO:0009299: mRNA transcription	5.24E-03
60	GO:0006949: syncytium formation	5.24E-03
61	GO:0006913: nucleocytoplasmic transport	5.79E-03
62	GO:0019684: photosynthesis, light reaction	5.79E-03
63	GO:0009089: lysine biosynthetic process via diaminopimelate	5.79E-03
64	GO:0009750: response to fructose	5.79E-03
65	GO:0010015: root morphogenesis	5.79E-03
66	GO:0006816: calcium ion transport	5.79E-03
67	GO:0010152: pollen maturation	6.35E-03
68	GO:0071365: cellular response to auxin stimulus	6.35E-03
69	GO:0009664: plant-type cell wall organization	6.54E-03
70	GO:0080167: response to karrikin	6.77E-03
71	GO:2000012: regulation of auxin polar transport	6.94E-03
72	GO:0010628: positive regulation of gene expression	6.94E-03
73	GO:0018107: peptidyl-threonine phosphorylation	6.94E-03
74	GO:0009725: response to hormone	6.94E-03
75	GO:0009933: meristem structural organization	7.55E-03
76	GO:0010207: photosystem II assembly	7.55E-03
77	GO:0006302: double-strand break repair	7.55E-03
78	GO:0048467: gynoecium development	7.55E-03
79	GO:0015979: photosynthesis	8.02E-03
80	GO:0019853: L-ascorbic acid biosynthetic process	8.18E-03
81	GO:0010030: positive regulation of seed germination	8.18E-03
82	GO:0070588: calcium ion transmembrane transport	8.18E-03
83	GO:0009944: polarity specification of adaxial/abaxial axis	9.48E-03
84	GO:0006874: cellular calcium ion homeostasis	1.02E-02
85	GO:0009742: brassinosteroid mediated signaling pathway	1.06E-02
86	GO:0051321: meiotic cell cycle	1.09E-02
87	GO:0048511: rhythmic process	1.09E-02
88	GO:0061077: chaperone-mediated protein folding	1.09E-02
89	GO:0006281: DNA repair	1.11E-02
90	GO:0019748: secondary metabolic process	1.16E-02
91	GO:0009411: response to UV	1.23E-02
92	GO:0071369: cellular response to ethylene stimulus	1.23E-02
93	GO:0006012: galactose metabolic process	1.23E-02
94	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.23E-02
95	GO:0006284: base-excision repair	1.31E-02
96	GO:0009306: protein secretion	1.31E-02
97	GO:0048443: stamen development	1.31E-02
98	GO:0008284: positive regulation of cell proliferation	1.38E-02
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
100	GO:0042631: cellular response to water deprivation	1.46E-02
101	GO:0010154: fruit development	1.54E-02
102	GO:0010305: leaf vascular tissue pattern formation	1.54E-02
103	GO:0009958: positive gravitropism	1.54E-02
104	GO:0046323: glucose import	1.54E-02
105	GO:0009741: response to brassinosteroid	1.54E-02
106	GO:0042752: regulation of circadian rhythm	1.62E-02
107	GO:0009646: response to absence of light	1.62E-02
108	GO:0040008: regulation of growth	1.66E-02
109	GO:0009749: response to glucose	1.70E-02
110	GO:0019252: starch biosynthetic process	1.70E-02
111	GO:0045490: pectin catabolic process	1.74E-02
112	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.79E-02
113	GO:0010583: response to cyclopentenone	1.87E-02
114	GO:0032502: developmental process	1.87E-02
115	GO:0009733: response to auxin	1.95E-02
116	GO:0009828: plant-type cell wall loosening	2.05E-02
117	GO:0009567: double fertilization forming a zygote and endosperm	2.05E-02
118	GO:0006351: transcription, DNA-templated	2.29E-02
119	GO:0009416: response to light stimulus	2.30E-02
120	GO:0001666: response to hypoxia	2.32E-02
121	GO:0006355: regulation of transcription, DNA-templated	2.51E-02
122	GO:0009627: systemic acquired resistance	2.51E-02
123	GO:0048573: photoperiodism, flowering	2.61E-02
124	GO:0016311: dephosphorylation	2.71E-02
125	GO:0006810: transport	2.91E-02
126	GO:0010218: response to far red light	3.01E-02
127	GO:0009631: cold acclimation	3.11E-02
128	GO:0048527: lateral root development	3.11E-02
129	GO:0009910: negative regulation of flower development	3.11E-02
130	GO:0044550: secondary metabolite biosynthetic process	3.62E-02
131	GO:0010114: response to red light	3.98E-02
132	GO:0009744: response to sucrose	3.98E-02
133	GO:0051707: response to other organism	3.98E-02
134	GO:0045892: negative regulation of transcription, DNA-templated	4.04E-02
135	GO:0016042: lipid catabolic process	4.76E-02
136	GO:0007165: signal transduction	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
4	GO:0015129: lactate transmembrane transporter activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0042736: NADH kinase activity	1.82E-04
7	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.10E-04
8	GO:0019156: isoamylase activity	4.10E-04
9	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.10E-04
10	GO:0016868: intramolecular transferase activity, phosphotransferases	4.10E-04
11	GO:0043425: bHLH transcription factor binding	4.10E-04
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.10E-04
13	GO:0090729: toxin activity	6.69E-04
14	GO:0016805: dipeptidase activity	6.69E-04
15	GO:0004180: carboxypeptidase activity	6.69E-04
16	GO:0005354: galactose transmembrane transporter activity	9.55E-04
17	GO:0030570: pectate lyase activity	1.02E-03
18	GO:0010011: auxin binding	1.27E-03
19	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.27E-03
20	GO:0004623: phospholipase A2 activity	1.61E-03
21	GO:0008725: DNA-3-methyladenine glycosylase activity	1.61E-03
22	GO:0042578: phosphoric ester hydrolase activity	1.98E-03
23	GO:0004556: alpha-amylase activity	1.98E-03
24	GO:0004462: lactoylglutathione lyase activity	1.98E-03
25	GO:0080030: methyl indole-3-acetate esterase activity	1.98E-03
26	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.38E-03
27	GO:0004033: aldo-keto reductase (NADP) activity	3.24E-03
28	GO:0030145: manganese ion binding	3.70E-03
29	GO:0003951: NAD+ kinase activity	3.71E-03
30	GO:0004185: serine-type carboxypeptidase activity	5.21E-03
31	GO:0015020: glucuronosyltransferase activity	5.24E-03
32	GO:0044183: protein binding involved in protein folding	5.79E-03
33	GO:0004565: beta-galactosidase activity	6.94E-03
34	GO:0005262: calcium channel activity	6.94E-03
35	GO:0008083: growth factor activity	7.55E-03
36	GO:0005217: intracellular ligand-gated ion channel activity	8.18E-03
37	GO:0004970: ionotropic glutamate receptor activity	8.18E-03
38	GO:0004190: aspartic-type endopeptidase activity	8.18E-03
39	GO:0008408: 3'-5' exonuclease activity	1.09E-02
40	GO:0003727: single-stranded RNA binding	1.31E-02
41	GO:0016829: lyase activity	1.36E-02
42	GO:0003713: transcription coactivator activity	1.54E-02
43	GO:0005355: glucose transmembrane transporter activity	1.62E-02
44	GO:0048038: quinone binding	1.79E-02
45	GO:0003824: catalytic activity	1.89E-02
46	GO:0016597: amino acid binding	2.23E-02
47	GO:0015250: water channel activity	2.32E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	2.74E-02
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.81E-02
50	GO:0005096: GTPase activator activity	2.91E-02
51	GO:0030246: carbohydrate binding	3.33E-02
52	GO:0003677: DNA binding	3.40E-02
53	GO:0003993: acid phosphatase activity	3.43E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	3.65E-02
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.95E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
57	GO:0043621: protein self-association	4.21E-02
58	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.30E-02
59	GO:0004722: protein serine/threonine phosphatase activity	4.36E-02
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009538: photosystem I reaction center	1.43E-04
6	GO:0000791: euchromatin	1.82E-04
7	GO:0031361: integral component of thylakoid membrane	1.82E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.17E-04
9	GO:0030870: Mre11 complex	4.10E-04
10	GO:0009535: chloroplast thylakoid membrane	5.75E-04
11	GO:0033281: TAT protein transport complex	6.69E-04
12	GO:0009531: secondary cell wall	9.55E-04
13	GO:0030660: Golgi-associated vesicle membrane	1.27E-03
14	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.27E-03
15	GO:0000795: synaptonemal complex	1.61E-03
16	GO:0009534: chloroplast thylakoid	1.85E-03
17	GO:0009533: chloroplast stromal thylakoid	2.80E-03
18	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.24E-03
19	GO:0031305: integral component of mitochondrial inner membrane	3.24E-03
20	GO:0009507: chloroplast	3.79E-03
21	GO:0055028: cortical microtubule	5.24E-03
22	GO:0005740: mitochondrial envelope	5.24E-03
23	GO:0005765: lysosomal membrane	5.79E-03
24	GO:0030095: chloroplast photosystem II	7.55E-03
25	GO:0031410: cytoplasmic vesicle	1.16E-02
26	GO:0009523: photosystem II	1.70E-02
27	GO:0000785: chromatin	1.87E-02
28	GO:0005576: extracellular region	1.91E-02
29	GO:0005667: transcription factor complex	2.51E-02
30	GO:0009579: thylakoid	2.87E-02
31	GO:0005874: microtubule	3.22E-02
32	GO:0009570: chloroplast stroma	4.61E-02