GO Enrichment Analysis of Co-expressed Genes with
AT3G54960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019307: mannose biosynthetic process | 0.00E+00 |
| 2 | GO:0007160: cell-matrix adhesion | 0.00E+00 |
| 3 | GO:0044794: positive regulation by host of viral process | 0.00E+00 |
| 4 | GO:0045047: protein targeting to ER | 0.00E+00 |
| 5 | GO:0006457: protein folding | 4.19E-17 |
| 6 | GO:0034976: response to endoplasmic reticulum stress | 1.18E-14 |
| 7 | GO:0006886: intracellular protein transport | 1.56E-08 |
| 8 | GO:0006487: protein N-linked glycosylation | 3.75E-07 |
| 9 | GO:0009651: response to salt stress | 3.72E-06 |
| 10 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 5.95E-06 |
| 11 | GO:0045454: cell redox homeostasis | 1.79E-05 |
| 12 | GO:0046686: response to cadmium ion | 6.82E-05 |
| 13 | GO:0010253: UDP-rhamnose biosynthetic process | 1.09E-04 |
| 14 | GO:0006651: diacylglycerol biosynthetic process | 1.09E-04 |
| 15 | GO:0006013: mannose metabolic process | 1.09E-04 |
| 16 | GO:0055074: calcium ion homeostasis | 1.09E-04 |
| 17 | GO:0000187: activation of MAPK activity | 1.62E-04 |
| 18 | GO:0009298: GDP-mannose biosynthetic process | 1.62E-04 |
| 19 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.15E-04 |
| 20 | GO:0010483: pollen tube reception | 2.21E-04 |
| 21 | GO:0016192: vesicle-mediated transport | 2.44E-04 |
| 22 | GO:0018279: protein N-linked glycosylation via asparagine | 2.84E-04 |
| 23 | GO:0006465: signal peptide processing | 2.84E-04 |
| 24 | GO:0010315: auxin efflux | 3.51E-04 |
| 25 | GO:0060918: auxin transport | 3.51E-04 |
| 26 | GO:0006605: protein targeting | 5.68E-04 |
| 27 | GO:0030968: endoplasmic reticulum unfolded protein response | 6.45E-04 |
| 28 | GO:0010205: photoinhibition | 8.07E-04 |
| 29 | GO:0043067: regulation of programmed cell death | 8.07E-04 |
| 30 | GO:0051555: flavonol biosynthetic process | 8.92E-04 |
| 31 | GO:0010075: regulation of meristem growth | 1.16E-03 |
| 32 | GO:0009934: regulation of meristem structural organization | 1.25E-03 |
| 33 | GO:0009225: nucleotide-sugar metabolic process | 1.35E-03 |
| 34 | GO:0019853: L-ascorbic acid biosynthetic process | 1.35E-03 |
| 35 | GO:0015992: proton transport | 1.76E-03 |
| 36 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.87E-03 |
| 37 | GO:0009814: defense response, incompatible interaction | 1.87E-03 |
| 38 | GO:0006979: response to oxidative stress | 1.89E-03 |
| 39 | GO:0009306: protein secretion | 2.10E-03 |
| 40 | GO:0042127: regulation of cell proliferation | 2.10E-03 |
| 41 | GO:0042147: retrograde transport, endosome to Golgi | 2.21E-03 |
| 42 | GO:0010051: xylem and phloem pattern formation | 2.33E-03 |
| 43 | GO:0010197: polar nucleus fusion | 2.45E-03 |
| 44 | GO:0048868: pollen tube development | 2.45E-03 |
| 45 | GO:0015031: protein transport | 2.54E-03 |
| 46 | GO:0009409: response to cold | 2.74E-03 |
| 47 | GO:0016032: viral process | 2.95E-03 |
| 48 | GO:0009567: double fertilization forming a zygote and endosperm | 3.22E-03 |
| 49 | GO:0010043: response to zinc ion | 4.80E-03 |
| 50 | GO:0009631: cold acclimation | 4.80E-03 |
| 51 | GO:0009735: response to cytokinin | 5.50E-03 |
| 52 | GO:0000209: protein polyubiquitination | 6.25E-03 |
| 53 | GO:0009644: response to high light intensity | 6.42E-03 |
| 54 | GO:0000165: MAPK cascade | 6.94E-03 |
| 55 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 6.94E-03 |
| 56 | GO:0048316: seed development | 8.59E-03 |
| 57 | GO:0009553: embryo sac development | 9.36E-03 |
| 58 | GO:0009790: embryo development | 1.25E-02 |
| 59 | GO:0006413: translational initiation | 1.34E-02 |
| 60 | GO:0009408: response to heat | 2.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | 0.00E+00 |
| 2 | GO:0004615: phosphomannomutase activity | 0.00E+00 |
| 3 | GO:0005212: structural constituent of eye lens | 0.00E+00 |
| 4 | GO:0051082: unfolded protein binding | 1.66E-10 |
| 5 | GO:0003756: protein disulfide isomerase activity | 5.44E-09 |
| 6 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.38E-06 |
| 7 | GO:0004656: procollagen-proline 4-dioxygenase activity | 3.17E-06 |
| 8 | GO:0008320: protein transmembrane transporter activity | 4.42E-06 |
| 9 | GO:0005509: calcium ion binding | 2.09E-05 |
| 10 | GO:1990381: ubiquitin-specific protease binding | 2.41E-05 |
| 11 | GO:0015157: oligosaccharide transmembrane transporter activity | 2.41E-05 |
| 12 | GO:0031418: L-ascorbic acid binding | 4.33E-05 |
| 13 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 6.16E-05 |
| 14 | GO:0010280: UDP-L-rhamnose synthase activity | 6.16E-05 |
| 15 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 6.16E-05 |
| 16 | GO:0016853: isomerase activity | 1.04E-04 |
| 17 | GO:0030246: carbohydrate binding | 1.36E-04 |
| 18 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.62E-04 |
| 19 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 2.21E-04 |
| 20 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.05E-04 |
| 21 | GO:0008195: phosphatidate phosphatase activity | 4.20E-04 |
| 22 | GO:0004427: inorganic diphosphatase activity | 4.92E-04 |
| 23 | GO:0004708: MAP kinase kinase activity | 5.68E-04 |
| 24 | GO:0045309: protein phosphorylated amino acid binding | 8.07E-04 |
| 25 | GO:0019904: protein domain specific binding | 9.78E-04 |
| 26 | GO:0005525: GTP binding | 1.44E-03 |
| 27 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 3.35E-03 |
| 28 | GO:0003746: translation elongation factor activity | 5.11E-03 |
| 29 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.14E-02 |
| 30 | GO:0005506: iron ion binding | 1.20E-02 |
| 31 | GO:0008565: protein transporter activity | 1.27E-02 |
| 32 | GO:0003824: catalytic activity | 1.34E-02 |
| 33 | GO:0003743: translation initiation factor activity | 1.57E-02 |
| 34 | GO:0016887: ATPase activity | 4.03E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008305: integrin complex | 0.00E+00 |
| 2 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 3 | GO:0005783: endoplasmic reticulum | 6.54E-25 |
| 4 | GO:0005788: endoplasmic reticulum lumen | 3.38E-17 |
| 5 | GO:0005774: vacuolar membrane | 2.63E-11 |
| 6 | GO:0005789: endoplasmic reticulum membrane | 1.08E-08 |
| 7 | GO:0005794: Golgi apparatus | 1.30E-07 |
| 8 | GO:0008250: oligosaccharyltransferase complex | 1.38E-06 |
| 9 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 4.42E-06 |
| 10 | GO:0005886: plasma membrane | 1.80E-05 |
| 11 | GO:0000836: Hrd1p ubiquitin ligase complex | 2.41E-05 |
| 12 | GO:0044322: endoplasmic reticulum quality control compartment | 2.41E-05 |
| 13 | GO:0009505: plant-type cell wall | 4.23E-05 |
| 14 | GO:0009507: chloroplast | 5.27E-05 |
| 15 | GO:0030134: ER to Golgi transport vesicle | 6.16E-05 |
| 16 | GO:0005773: vacuole | 1.31E-04 |
| 17 | GO:0032580: Golgi cisterna membrane | 1.50E-04 |
| 18 | GO:0036513: Derlin-1 retrotranslocation complex | 1.62E-04 |
| 19 | GO:0009506: plasmodesma | 2.03E-04 |
| 20 | GO:0005851: eukaryotic translation initiation factor 2B complex | 3.51E-04 |
| 21 | GO:0030127: COPII vesicle coat | 3.51E-04 |
| 22 | GO:0030904: retromer complex | 3.51E-04 |
| 23 | GO:0000326: protein storage vacuole | 6.45E-04 |
| 24 | GO:0031090: organelle membrane | 7.25E-04 |
| 25 | GO:0005623: cell | 9.33E-04 |
| 26 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.35E-03 |
| 27 | GO:0016020: membrane | 1.44E-03 |
| 28 | GO:0019898: extrinsic component of membrane | 2.70E-03 |
| 29 | GO:0016592: mediator complex | 2.95E-03 |
| 30 | GO:0031902: late endosome membrane | 5.75E-03 |
| 31 | GO:0005635: nuclear envelope | 7.84E-03 |
| 32 | GO:0048046: apoplast | 9.60E-03 |
| 33 | GO:0005802: trans-Golgi network | 9.64E-03 |
| 34 | GO:0005622: intracellular | 1.07E-02 |
| 35 | GO:0005768: endosome | 1.10E-02 |
| 36 | GO:0016021: integral component of membrane | 1.11E-02 |
| 37 | GO:0000139: Golgi membrane | 1.65E-02 |
| 38 | GO:0043231: intracellular membrane-bounded organelle | 3.16E-02 |
| 39 | GO:0005618: cell wall | 4.83E-02 |