co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:0006862: nucleotide transport	0.00E+00
3	GO:0042754: negative regulation of circadian rhythm	6.72E-05
4	GO:0006873: cellular ion homeostasis	3.07E-04
5	GO:0032957: inositol trisphosphate metabolic process	3.07E-04
6	GO:2000033: regulation of seed dormancy process	4.53E-04
7	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	6.10E-04
8	GO:0009699: phenylpropanoid biosynthetic process	6.94E-04
9	GO:0098656: anion transmembrane transport	7.80E-04
10	GO:0018107: peptidyl-threonine phosphorylation	1.25E-03
11	GO:0009969: xyloglucan biosynthetic process	1.45E-03
12	GO:2000377: regulation of reactive oxygen species metabolic process	1.67E-03
13	GO:0009863: salicylic acid mediated signaling pathway	1.67E-03
14	GO:0010187: negative regulation of seed germination	1.67E-03
15	GO:0010200: response to chitin	2.69E-03
16	GO:0010029: regulation of seed germination	4.06E-03
17	GO:0010411: xyloglucan metabolic process	4.37E-03
18	GO:0048767: root hair elongation	4.85E-03
19	GO:0006811: ion transport	5.02E-03
20	GO:0006865: amino acid transport	5.35E-03
21	GO:0009867: jasmonic acid mediated signaling pathway	5.52E-03
22	GO:0006839: mitochondrial transport	6.04E-03
23	GO:0008283: cell proliferation	6.57E-03
24	GO:0016310: phosphorylation	6.74E-03
25	GO:0042538: hyperosmotic salinity response	7.69E-03
26	GO:0009809: lignin biosynthetic process	8.08E-03
27	GO:0055085: transmembrane transport	8.56E-03
28	GO:0009740: gibberellic acid mediated signaling pathway	9.92E-03
29	GO:0042545: cell wall modification	1.01E-02
30	GO:0009624: response to nematode	1.03E-02
31	GO:0018105: peptidyl-serine phosphorylation	1.06E-02
32	GO:0006979: response to oxidative stress	1.38E-02
33	GO:0030154: cell differentiation	1.49E-02
34	GO:0007623: circadian rhythm	1.52E-02
35	GO:0045490: pectin catabolic process	1.52E-02
36	GO:0009739: response to gibberellin	1.65E-02
37	GO:0010468: regulation of gene expression	1.73E-02
38	GO:0006970: response to osmotic stress	2.19E-02
39	GO:0009723: response to ethylene	2.30E-02
40	GO:0080167: response to karrikin	2.42E-02
41	GO:0007275: multicellular organism development	2.70E-02
42	GO:0045454: cell redox homeostasis	2.75E-02
43	GO:0009737: response to abscisic acid	2.92E-02
44	GO:0016042: lipid catabolic process	3.13E-02
45	GO:0009751: response to salicylic acid	3.16E-02
46	GO:0009873: ethylene-activated signaling pathway	3.83E-02
47	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.90E-02
48	GO:0016567: protein ubiquitination	4.16E-02
49	GO:0009611: response to wounding	4.88E-02
50	GO:0035556: intracellular signal transduction	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
2	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.18E-04
3	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.18E-04
4	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.76E-04
5	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.76E-04
6	GO:0016621: cinnamoyl-CoA reductase activity	5.30E-04
7	GO:0008308: voltage-gated anion channel activity	6.94E-04
8	GO:0000989: transcription factor activity, transcription factor binding	7.80E-04
9	GO:0005315: inorganic phosphate transmembrane transporter activity	1.25E-03
10	GO:0008083: growth factor activity	1.35E-03
11	GO:0004857: enzyme inhibitor activity	1.67E-03
12	GO:0051087: chaperone binding	1.78E-03
13	GO:0008514: organic anion transmembrane transporter activity	2.26E-03
14	GO:0005215: transporter activity	2.46E-03
15	GO:0050662: coenzyme binding	2.78E-03
16	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.62E-03
17	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.62E-03
18	GO:0016298: lipase activity	8.28E-03
19	GO:0015171: amino acid transmembrane transporter activity	8.68E-03
20	GO:0045330: aspartyl esterase activity	8.68E-03
21	GO:0030599: pectinesterase activity	9.92E-03
22	GO:0016758: transferase activity, transferring hexosyl groups	1.19E-02
23	GO:0044212: transcription regulatory region DNA binding	1.37E-02
24	GO:0015144: carbohydrate transmembrane transporter activity	1.38E-02
25	GO:0015297: antiporter activity	1.47E-02
26	GO:0005351: sugar:proton symporter activity	1.50E-02
27	GO:0043565: sequence-specific DNA binding	1.71E-02
28	GO:0004842: ubiquitin-protein transferase activity	1.89E-02
29	GO:0003729: mRNA binding	2.04E-02
30	GO:0000287: magnesium ion binding	2.05E-02
31	GO:0016301: kinase activity	2.33E-02
32	GO:0052689: carboxylic ester hydrolase activity	2.60E-02
33	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.75E-02
34	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009706: chloroplast inner membrane	1.03E-02
2	GO:0005802: trans-Golgi network	1.08E-02
3	GO:0005622: intracellular	1.20E-02
4	GO:0005768: endosome	1.23E-02
5	GO:0005618: cell wall	1.24E-02
6	GO:0009536: plastid	1.68E-02
7	GO:0009505: plant-type cell wall	1.72E-02
8	GO:0046658: anchored component of plasma membrane	1.86E-02
9	GO:0000139: Golgi membrane	1.86E-02
10	GO:0005743: mitochondrial inner membrane	3.03E-02