co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006720: isoprenoid metabolic process	0.00E+00
2	GO:0018293: protein-FAD linkage	0.00E+00
3	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0006555: methionine metabolic process	5.05E-06
6	GO:0019509: L-methionine salvage from methylthioadenosine	7.36E-06
7	GO:0048438: floral whorl development	4.04E-05
8	GO:0006567: threonine catabolic process	4.04E-05
9	GO:0016487: farnesol metabolic process	4.04E-05
10	GO:0019388: galactose catabolic process	1.00E-04
11	GO:0010220: positive regulation of vernalization response	1.00E-04
12	GO:0019441: tryptophan catabolic process to kynurenine	1.00E-04
13	GO:0080183: response to photooxidative stress	1.00E-04
14	GO:0043100: pyrimidine nucleobase salvage	1.00E-04
15	GO:2000030: regulation of response to red or far red light	1.00E-04
16	GO:0044210: 'de novo' CTP biosynthetic process	1.73E-04
17	GO:1901562: response to paraquat	1.73E-04
18	GO:0055114: oxidation-reduction process	1.87E-04
19	GO:0006520: cellular amino acid metabolic process	1.95E-04
20	GO:0009590: detection of gravity	2.55E-04
21	GO:0070534: protein K63-linked ubiquitination	3.43E-04
22	GO:0006545: glycine biosynthetic process	3.43E-04
23	GO:0033365: protein localization to organelle	5.37E-04
24	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	5.37E-04
25	GO:0006301: postreplication repair	5.37E-04
26	GO:0070814: hydrogen sulfide biosynthetic process	5.37E-04
27	GO:0000060: protein import into nucleus, translocation	5.37E-04
28	GO:0006099: tricarboxylic acid cycle	6.02E-04
29	GO:0010076: maintenance of floral meristem identity	6.40E-04
30	GO:0010077: maintenance of inflorescence meristem identity	6.40E-04
31	GO:0050790: regulation of catalytic activity	7.49E-04
32	GO:0030091: protein repair	8.61E-04
33	GO:0006102: isocitrate metabolic process	8.61E-04
34	GO:0005978: glycogen biosynthetic process	8.61E-04
35	GO:0015996: chlorophyll catabolic process	9.77E-04
36	GO:0000103: sulfate assimilation	1.35E-03
37	GO:0009970: cellular response to sulfate starvation	1.35E-03
38	GO:0006879: cellular iron ion homeostasis	1.49E-03
39	GO:0048229: gametophyte development	1.49E-03
40	GO:0010582: floral meristem determinacy	1.63E-03
41	GO:0006006: glucose metabolic process	1.77E-03
42	GO:0048440: carpel development	1.92E-03
43	GO:0016226: iron-sulfur cluster assembly	2.89E-03
44	GO:0006012: galactose metabolic process	3.06E-03
45	GO:0080022: primary root development	3.61E-03
46	GO:0019252: starch biosynthetic process	4.19E-03
47	GO:0008654: phospholipid biosynthetic process	4.19E-03
48	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.38E-03
49	GO:0006464: cellular protein modification process	5.00E-03
50	GO:0009407: toxin catabolic process	7.25E-03
51	GO:0007568: aging	7.49E-03
52	GO:0009636: response to toxic substance	1.03E-02
53	GO:0000165: MAPK cascade	1.09E-02
54	GO:0051603: proteolysis involved in cellular protein catabolic process	1.20E-02
55	GO:0009058: biosynthetic process	1.84E-02
56	GO:0009739: response to gibberellin	2.41E-02
57	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.87E-02
58	GO:0006810: transport	3.45E-02
59	GO:0080167: response to karrikin	3.54E-02
60	GO:0005975: carbohydrate metabolic process	3.56E-02
61	GO:0046686: response to cadmium ion	3.65E-02
62	GO:0016042: lipid catabolic process	4.57E-02
63	GO:0009737: response to abscisic acid	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
2	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
3	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0052670: geraniol kinase activity	0.00E+00
6	GO:0052668: farnesol kinase activity	0.00E+00
7	GO:0052671: geranylgeraniol kinase activity	0.00E+00
8	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
9	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.06E-07
10	GO:0008106: alcohol dehydrogenase (NADP+) activity	9.85E-07
11	GO:0004793: threonine aldolase activity	4.04E-05
12	GO:0016783: sulfurtransferase activity	4.04E-05
13	GO:0008732: L-allo-threonine aldolase activity	4.04E-05
14	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	4.04E-05
15	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	4.04E-05
16	GO:0004061: arylformamidase activity	1.00E-04
17	GO:0004614: phosphoglucomutase activity	1.00E-04
18	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.00E-04
19	GO:0016868: intramolecular transferase activity, phosphotransferases	1.00E-04
20	GO:0004781: sulfate adenylyltransferase (ATP) activity	1.73E-04
21	GO:0016491: oxidoreductase activity	1.94E-04
22	GO:0004792: thiosulfate sulfurtransferase activity	2.55E-04
23	GO:0003883: CTP synthase activity	2.55E-04
24	GO:0008177: succinate dehydrogenase (ubiquinone) activity	4.37E-04
25	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.37E-04
26	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	5.37E-04
27	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	5.37E-04
28	GO:0004605: phosphatidate cytidylyltransferase activity	5.37E-04
29	GO:0004034: aldose 1-epimerase activity	8.61E-04
30	GO:0015266: protein channel activity	1.77E-03
31	GO:0000287: magnesium ion binding	3.50E-03
32	GO:0016853: isomerase activity	3.99E-03
33	GO:0048038: quinone binding	4.38E-03
34	GO:0004197: cysteine-type endopeptidase activity	4.58E-03
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.77E-03
36	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.99E-03
37	GO:0004364: glutathione transferase activity	9.27E-03
38	GO:0051287: NAD binding	1.09E-02
39	GO:0016298: lipase activity	1.20E-02
40	GO:0008234: cysteine-type peptidase activity	1.26E-02
41	GO:0031625: ubiquitin protein ligase binding	1.26E-02
42	GO:0022857: transmembrane transporter activity	1.45E-02
43	GO:0016829: lyase activity	1.87E-02
44	GO:0030170: pyridoxal phosphate binding	1.91E-02
45	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.94E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-02
47	GO:0046982: protein heterodimerization activity	2.99E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	3.08E-02
49	GO:0004672: protein kinase activity	3.45E-02
50	GO:0061630: ubiquitin protein ligase activity	3.67E-02
51	GO:0052689: carboxylic ester hydrolase activity	3.80E-02
52	GO:0042803: protein homodimerization activity	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.43E-05
2	GO:0005747: mitochondrial respiratory chain complex I	8.48E-05
3	GO:0010319: stromule	3.14E-04
4	GO:0009526: plastid envelope	3.43E-04
5	GO:0009527: plastid outer membrane	3.43E-04
6	GO:0031372: UBC13-MMS2 complex	3.43E-04
7	GO:0005829: cytosol	4.31E-04
8	GO:0031969: chloroplast membrane	5.36E-04
9	GO:0009501: amyloplast	8.61E-04
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.10E-03
11	GO:0005737: cytoplasm	1.82E-03
12	GO:0005764: lysosome	1.92E-03
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.24E-03
14	GO:0009570: chloroplast stroma	3.41E-03
15	GO:0009535: chloroplast thylakoid membrane	1.20E-02
16	GO:0005777: peroxisome	1.33E-02
17	GO:0016607: nuclear speck	1.35E-02
18	GO:0010287: plastoglobule	1.70E-02
19	GO:0005759: mitochondrial matrix	2.08E-02
20	GO:0005615: extracellular space	2.41E-02
21	GO:0009536: plastid	2.88E-02