co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048856: anatomical structure development	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0016576: histone dephosphorylation	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0010343: singlet oxygen-mediated programmed cell death	5.31E-07
6	GO:0072387: flavin adenine dinucleotide metabolic process	1.00E-04
7	GO:0048438: floral whorl development	1.00E-04
8	GO:0010617: circadian regulation of calcium ion oscillation	2.36E-04
9	GO:0099402: plant organ development	2.36E-04
10	GO:0035335: peptidyl-tyrosine dephosphorylation	2.36E-04
11	GO:1901529: positive regulation of anion channel activity	2.36E-04
12	GO:0045739: positive regulation of DNA repair	3.92E-04
13	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.92E-04
14	GO:1902448: positive regulation of shade avoidance	3.92E-04
15	GO:1901672: positive regulation of systemic acquired resistance	3.92E-04
16	GO:1901332: negative regulation of lateral root development	5.64E-04
17	GO:0006882: cellular zinc ion homeostasis	5.64E-04
18	GO:1902347: response to strigolactone	7.50E-04
19	GO:0042274: ribosomal small subunit biogenesis	7.50E-04
20	GO:0031935: regulation of chromatin silencing	7.50E-04
21	GO:0006552: leucine catabolic process	7.50E-04
22	GO:0000304: response to singlet oxygen	9.47E-04
23	GO:0010117: photoprotection	9.47E-04
24	GO:0046283: anthocyanin-containing compound metabolic process	9.47E-04
25	GO:0000741: karyogamy	1.16E-03
26	GO:0060918: auxin transport	1.16E-03
27	GO:0016070: RNA metabolic process	1.16E-03
28	GO:0031053: primary miRNA processing	1.16E-03
29	GO:1901371: regulation of leaf morphogenesis	1.16E-03
30	GO:0010076: maintenance of floral meristem identity	1.38E-03
31	GO:0010016: shoot system morphogenesis	1.38E-03
32	GO:0010310: regulation of hydrogen peroxide metabolic process	1.38E-03
33	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.38E-03
34	GO:0030026: cellular manganese ion homeostasis	1.62E-03
35	GO:0051510: regulation of unidimensional cell growth	1.62E-03
36	GO:1900056: negative regulation of leaf senescence	1.62E-03
37	GO:0080111: DNA demethylation	1.62E-03
38	GO:0009910: negative regulation of flower development	1.65E-03
39	GO:0009658: chloroplast organization	1.83E-03
40	GO:0030091: protein repair	1.87E-03
41	GO:0009704: de-etiolation	1.87E-03
42	GO:0006102: isocitrate metabolic process	1.87E-03
43	GO:0048564: photosystem I assembly	1.87E-03
44	GO:0045292: mRNA cis splicing, via spliceosome	1.87E-03
45	GO:0009821: alkaloid biosynthetic process	2.41E-03
46	GO:1900426: positive regulation of defense response to bacterium	2.70E-03
47	GO:0009638: phototropism	2.70E-03
48	GO:0010380: regulation of chlorophyll biosynthetic process	2.70E-03
49	GO:0055062: phosphate ion homeostasis	3.00E-03
50	GO:0045036: protein targeting to chloroplast	3.00E-03
51	GO:0006816: calcium ion transport	3.31E-03
52	GO:0010582: floral meristem determinacy	3.63E-03
53	GO:0010075: regulation of meristem growth	3.95E-03
54	GO:0009767: photosynthetic electron transport chain	3.95E-03
55	GO:0009785: blue light signaling pathway	3.95E-03
56	GO:0009266: response to temperature stimulus	4.30E-03
57	GO:0000162: tryptophan biosynthetic process	5.00E-03
58	GO:0006289: nucleotide-excision repair	5.37E-03
59	GO:2000377: regulation of reactive oxygen species metabolic process	5.37E-03
60	GO:0007017: microtubule-based process	5.75E-03
61	GO:0016226: iron-sulfur cluster assembly	6.54E-03
62	GO:0010214: seed coat development	7.35E-03
63	GO:0010118: stomatal movement	8.21E-03
64	GO:0010197: polar nucleus fusion	8.65E-03
65	GO:0042752: regulation of circadian rhythm	9.10E-03
66	GO:0009646: response to absence of light	9.10E-03
67	GO:0009851: auxin biosynthetic process	9.56E-03
68	GO:0006464: cellular protein modification process	1.15E-02
69	GO:0071805: potassium ion transmembrane transport	1.20E-02
70	GO:0016579: protein deubiquitination	1.25E-02
71	GO:0048366: leaf development	1.39E-02
72	GO:0006950: response to stress	1.46E-02
73	GO:0018298: protein-chromophore linkage	1.57E-02
74	GO:0010218: response to far red light	1.68E-02
75	GO:0006811: ion transport	1.68E-02
76	GO:0010043: response to zinc ion	1.74E-02
77	GO:0007568: aging	1.74E-02
78	GO:0009631: cold acclimation	1.74E-02
79	GO:0009637: response to blue light	1.86E-02
80	GO:0006099: tricarboxylic acid cycle	1.91E-02
81	GO:0006629: lipid metabolic process	2.17E-02
82	GO:0009640: photomorphogenesis	2.22E-02
83	GO:0008283: cell proliferation	2.22E-02
84	GO:0010114: response to red light	2.22E-02
85	GO:0009644: response to high light intensity	2.35E-02
86	GO:0006260: DNA replication	2.55E-02
87	GO:0000165: MAPK cascade	2.55E-02
88	GO:0006813: potassium ion transport	2.75E-02
89	GO:0006417: regulation of translation	2.95E-02
90	GO:0048367: shoot system development	3.17E-02
91	GO:0055114: oxidation-reduction process	3.60E-02
92	GO:0009555: pollen development	3.84E-02
93	GO:0000398: mRNA splicing, via spliceosome	3.91E-02
94	GO:0009058: biosynthetic process	4.30E-02
95	GO:0009845: seed germination	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
3	GO:0004046: aminoacylase activity	5.31E-07
4	GO:0004848: ureidoglycolate hydrolase activity	2.01E-06
5	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.00E-04
6	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.00E-04
7	GO:0015085: calcium ion transmembrane transporter activity	1.00E-04
8	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.00E-04
9	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.36E-04
10	GO:0000900: translation repressor activity, nucleic acid binding	3.92E-04
11	GO:0004075: biotin carboxylase activity	3.92E-04
12	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	3.92E-04
13	GO:0004180: carboxypeptidase activity	3.92E-04
14	GO:0032947: protein complex scaffold	3.92E-04
15	GO:0016491: oxidoreductase activity	4.08E-04
16	GO:0016851: magnesium chelatase activity	5.64E-04
17	GO:0000339: RNA cap binding	5.64E-04
18	GO:0009882: blue light photoreceptor activity	5.64E-04
19	GO:0046556: alpha-L-arabinofuranosidase activity	7.50E-04
20	GO:0015368: calcium:cation antiporter activity	7.50E-04
21	GO:0004834: tryptophan synthase activity	7.50E-04
22	GO:0015369: calcium:proton antiporter activity	7.50E-04
23	GO:0052793: pectin acetylesterase activity	7.50E-04
24	GO:0016787: hydrolase activity	1.08E-03
25	GO:0071949: FAD binding	2.41E-03
26	GO:0016844: strictosidine synthase activity	2.70E-03
27	GO:0004713: protein tyrosine kinase activity	3.00E-03
28	GO:0047372: acylglycerol lipase activity	3.31E-03
29	GO:0004129: cytochrome-c oxidase activity	3.31E-03
30	GO:0031072: heat shock protein binding	3.95E-03
31	GO:0003887: DNA-directed DNA polymerase activity	5.00E-03
32	GO:0051536: iron-sulfur cluster binding	5.37E-03
33	GO:0015079: potassium ion transmembrane transporter activity	5.75E-03
34	GO:0004176: ATP-dependent peptidase activity	6.14E-03
35	GO:0003713: transcription coactivator activity	8.65E-03
36	GO:0008080: N-acetyltransferase activity	8.65E-03
37	GO:0048038: quinone binding	1.00E-02
38	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.00E-02
39	GO:0004518: nuclease activity	1.05E-02
40	GO:0008237: metallopeptidase activity	1.20E-02
41	GO:0008483: transaminase activity	1.20E-02
42	GO:0004806: triglyceride lipase activity	1.46E-02
43	GO:0008236: serine-type peptidase activity	1.51E-02
44	GO:0004222: metalloendopeptidase activity	1.68E-02
45	GO:0050897: cobalt ion binding	1.74E-02
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.97E-02
47	GO:0005198: structural molecule activity	2.41E-02
48	GO:0051287: NAD binding	2.55E-02
49	GO:0003777: microtubule motor activity	2.95E-02
50	GO:0051082: unfolded protein binding	3.53E-02
51	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.22E-02
52	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.54E-02
53	GO:0005515: protein binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.26E-07
2	GO:0005845: mRNA cap binding complex	1.00E-04
3	GO:0005846: nuclear cap binding complex	2.36E-04
4	GO:0016605: PML body	3.92E-04
5	GO:0030286: dynein complex	7.50E-04
6	GO:0009840: chloroplastic endopeptidase Clp complex	1.38E-03
7	GO:0000123: histone acetyltransferase complex	1.62E-03
8	GO:0046930: pore complex	2.14E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.41E-03
10	GO:0016604: nuclear body	2.70E-03
11	GO:0005578: proteinaceous extracellular matrix	3.95E-03
12	GO:0005875: microtubule associated complex	5.00E-03
13	GO:0042651: thylakoid membrane	5.75E-03
14	GO:0005773: vacuole	1.97E-02
15	GO:0031966: mitochondrial membrane	2.61E-02
16	GO:0009505: plant-type cell wall	2.64E-02
17	GO:0005623: cell	4.22E-02
18	GO:0005759: mitochondrial matrix	4.87E-02