co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0007160: cell-matrix adhesion	0.00E+00
9	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
10	GO:0006869: lipid transport	3.55E-06
11	GO:0046686: response to cadmium ion	3.82E-06
12	GO:0006820: anion transport	1.07E-05
13	GO:0001676: long-chain fatty acid metabolic process	1.11E-05
14	GO:0009651: response to salt stress	1.57E-05
15	GO:0006511: ubiquitin-dependent protein catabolic process	7.49E-05
16	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	9.33E-05
17	GO:1901349: glucosinolate transport	1.62E-04
18	GO:0090449: phloem glucosinolate loading	1.62E-04
19	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.62E-04
20	GO:0042964: thioredoxin reduction	1.62E-04
21	GO:0006106: fumarate metabolic process	1.62E-04
22	GO:0010365: positive regulation of ethylene biosynthetic process	1.62E-04
23	GO:0006434: seryl-tRNA aminoacylation	1.62E-04
24	GO:0042744: hydrogen peroxide catabolic process	2.81E-04
25	GO:0016485: protein processing	3.02E-04
26	GO:0010043: response to zinc ion	3.47E-04
27	GO:0051788: response to misfolded protein	3.69E-04
28	GO:0015786: UDP-glucose transport	3.69E-04
29	GO:0019752: carboxylic acid metabolic process	3.69E-04
30	GO:1990069: stomatal opening	3.69E-04
31	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	3.69E-04
32	GO:0006099: tricarboxylic acid cycle	4.14E-04
33	GO:0034976: response to endoplasmic reticulum stress	5.56E-04
34	GO:0008333: endosome to lysosome transport	6.04E-04
35	GO:0008652: cellular amino acid biosynthetic process	6.04E-04
36	GO:0015783: GDP-fucose transport	6.04E-04
37	GO:0015992: proton transport	7.44E-04
38	GO:0048511: rhythmic process	7.44E-04
39	GO:0072334: UDP-galactose transmembrane transport	8.63E-04
40	GO:0009647: skotomorphogenesis	8.63E-04
41	GO:0009963: positive regulation of flavonoid biosynthetic process	8.63E-04
42	GO:0071786: endoplasmic reticulum tubular network organization	8.63E-04
43	GO:0046513: ceramide biosynthetic process	8.63E-04
44	GO:0046836: glycolipid transport	8.63E-04
45	GO:0009413: response to flooding	8.63E-04
46	GO:0009735: response to cytokinin	8.64E-04
47	GO:0006979: response to oxidative stress	9.14E-04
48	GO:0010363: regulation of plant-type hypersensitive response	1.14E-03
49	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.14E-03
50	GO:0045454: cell redox homeostasis	1.35E-03
51	GO:0018279: protein N-linked glycosylation via asparagine	1.45E-03
52	GO:0010117: photoprotection	1.45E-03
53	GO:0006564: L-serine biosynthetic process	1.45E-03
54	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.45E-03
55	GO:1902183: regulation of shoot apical meristem development	1.45E-03
56	GO:0045116: protein neddylation	1.45E-03
57	GO:0010193: response to ozone	1.47E-03
58	GO:0009409: response to cold	1.63E-03
59	GO:0030163: protein catabolic process	1.66E-03
60	GO:0009058: biosynthetic process	1.72E-03
61	GO:0043248: proteasome assembly	1.78E-03
62	GO:0009228: thiamine biosynthetic process	1.78E-03
63	GO:1901001: negative regulation of response to salt stress	2.14E-03
64	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.14E-03
65	GO:0006744: ubiquinone biosynthetic process	2.52E-03
66	GO:1900056: negative regulation of leaf senescence	2.52E-03
67	GO:0050829: defense response to Gram-negative bacterium	2.52E-03
68	GO:0048528: post-embryonic root development	2.52E-03
69	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.79E-03
70	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.91E-03
71	GO:0009642: response to light intensity	2.91E-03
72	GO:0031540: regulation of anthocyanin biosynthetic process	2.91E-03
73	GO:0006102: isocitrate metabolic process	2.91E-03
74	GO:0006811: ion transport	3.01E-03
75	GO:0009617: response to bacterium	3.03E-03
76	GO:0019430: removal of superoxide radicals	3.33E-03
77	GO:0010497: plasmodesmata-mediated intercellular transport	3.33E-03
78	GO:0006367: transcription initiation from RNA polymerase II promoter	3.33E-03
79	GO:0010204: defense response signaling pathway, resistance gene-independent	3.33E-03
80	GO:0010208: pollen wall assembly	3.33E-03
81	GO:0010206: photosystem II repair	3.77E-03
82	GO:0006754: ATP biosynthetic process	3.77E-03
83	GO:0009060: aerobic respiration	3.77E-03
84	GO:0015780: nucleotide-sugar transport	3.77E-03
85	GO:0098656: anion transmembrane transport	3.77E-03
86	GO:0006631: fatty acid metabolic process	4.10E-03
87	GO:0043067: regulation of programmed cell death	4.22E-03
88	GO:0042761: very long-chain fatty acid biosynthetic process	4.22E-03
89	GO:2000280: regulation of root development	4.22E-03
90	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.69E-03
91	GO:0006032: chitin catabolic process	4.69E-03
92	GO:0009682: induced systemic resistance	5.19E-03
93	GO:0072593: reactive oxygen species metabolic process	5.19E-03
94	GO:0000272: polysaccharide catabolic process	5.19E-03
95	GO:0009846: pollen germination	5.58E-03
96	GO:0008361: regulation of cell size	5.69E-03
97	GO:0051603: proteolysis involved in cellular protein catabolic process	6.20E-03
98	GO:0006807: nitrogen compound metabolic process	6.22E-03
99	GO:0006626: protein targeting to mitochondrion	6.22E-03
100	GO:0006108: malate metabolic process	6.22E-03
101	GO:0055085: transmembrane transport	6.38E-03
102	GO:0002237: response to molecule of bacterial origin	6.76E-03
103	GO:0007034: vacuolar transport	6.76E-03
104	GO:0010223: secondary shoot formation	6.76E-03
105	GO:0009934: regulation of meristem structural organization	6.76E-03
106	GO:0006096: glycolytic process	7.08E-03
107	GO:0048316: seed development	7.31E-03
108	GO:0050832: defense response to fungus	7.65E-03
109	GO:0030150: protein import into mitochondrial matrix	8.48E-03
110	GO:0006289: nucleotide-excision repair	8.48E-03
111	GO:0006487: protein N-linked glycosylation	8.48E-03
112	GO:0009408: response to heat	9.08E-03
113	GO:0008299: isoprenoid biosynthetic process	9.09E-03
114	GO:0048364: root development	9.58E-03
115	GO:0030245: cellulose catabolic process	1.04E-02
116	GO:0010584: pollen exine formation	1.17E-02
117	GO:0042147: retrograde transport, endosome to Golgi	1.24E-02
118	GO:0016117: carotenoid biosynthetic process	1.24E-02
119	GO:0009790: embryo development	1.25E-02
120	GO:0009737: response to abscisic acid	1.29E-02
121	GO:0042631: cellular response to water deprivation	1.31E-02
122	GO:0000413: protein peptidyl-prolyl isomerization	1.31E-02
123	GO:0010118: stomatal movement	1.31E-02
124	GO:0015991: ATP hydrolysis coupled proton transport	1.31E-02
125	GO:0006520: cellular amino acid metabolic process	1.38E-02
126	GO:0048868: pollen tube development	1.38E-02
127	GO:0009793: embryo development ending in seed dormancy	1.49E-02
128	GO:0006623: protein targeting to vacuole	1.52E-02
129	GO:0010183: pollen tube guidance	1.52E-02
130	GO:0048825: cotyledon development	1.52E-02
131	GO:0009749: response to glucose	1.52E-02
132	GO:0000302: response to reactive oxygen species	1.60E-02
133	GO:0016579: protein deubiquitination	1.99E-02
134	GO:0009826: unidimensional cell growth	2.21E-02
135	GO:0016049: cell growth	2.42E-02
136	GO:0030244: cellulose biosynthetic process	2.51E-02
137	GO:0006457: protein folding	2.60E-02
138	GO:0010119: regulation of stomatal movement	2.78E-02
139	GO:0080167: response to karrikin	2.84E-02
140	GO:0045087: innate immune response	2.97E-02
141	GO:0034599: cellular response to oxidative stress	3.06E-02
142	GO:0006839: mitochondrial transport	3.26E-02
143	GO:0008283: cell proliferation	3.55E-02
144	GO:0009926: auxin polar transport	3.55E-02
145	GO:0051707: response to other organism	3.55E-02
146	GO:0008643: carbohydrate transport	3.76E-02
147	GO:0006855: drug transmembrane transport	3.97E-02
148	GO:0009664: plant-type cell wall organization	4.18E-02
149	GO:0009414: response to water deprivation	4.39E-02
150	GO:0009736: cytokinin-activated signaling pathway	4.39E-02
151	GO:0042742: defense response to bacterium	4.52E-02
152	GO:0006857: oligopeptide transport	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0033919: glucan 1,3-alpha-glucosidase activity	0.00E+00
3	GO:0015926: glucosidase activity	0.00E+00
4	GO:0003796: lysozyme activity	0.00E+00
5	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
6	GO:0016881: acid-amino acid ligase activity	0.00E+00
7	GO:0004298: threonine-type endopeptidase activity	9.05E-07
8	GO:0015288: porin activity	1.72E-06
9	GO:0008308: voltage-gated anion channel activity	2.52E-06
10	GO:0008289: lipid binding	1.50E-05
11	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.35E-05
12	GO:0102391: decanoate--CoA ligase activity	6.99E-05
13	GO:0004467: long-chain fatty acid-CoA ligase activity	9.33E-05
14	GO:0004828: serine-tRNA ligase activity	1.62E-04
15	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.62E-04
16	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.62E-04
17	GO:0090448: glucosinolate:proton symporter activity	1.62E-04
18	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.62E-04
19	GO:0004333: fumarate hydratase activity	1.62E-04
20	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.62E-04
21	GO:0008233: peptidase activity	1.66E-04
22	GO:0050347: trans-octaprenyltranstransferase activity	3.69E-04
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.69E-04
24	GO:0019172: glyoxalase III activity	3.69E-04
25	GO:0008517: folic acid transporter activity	3.69E-04
26	GO:0004634: phosphopyruvate hydratase activity	3.69E-04
27	GO:0050291: sphingosine N-acyltransferase activity	3.69E-04
28	GO:0004618: phosphoglycerate kinase activity	3.69E-04
29	GO:0019781: NEDD8 activating enzyme activity	3.69E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	3.69E-04
31	GO:0008253: 5'-nucleotidase activity	6.04E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	6.04E-04
33	GO:0005457: GDP-fucose transmembrane transporter activity	6.04E-04
34	GO:0004601: peroxidase activity	7.49E-04
35	GO:0019201: nucleotide kinase activity	8.63E-04
36	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.63E-04
37	GO:0004108: citrate (Si)-synthase activity	8.63E-04
38	GO:0005460: UDP-glucose transmembrane transporter activity	8.63E-04
39	GO:0017089: glycolipid transporter activity	8.63E-04
40	GO:0003756: protein disulfide isomerase activity	9.56E-04
41	GO:0070628: proteasome binding	1.14E-03
42	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.14E-03
43	GO:0008022: protein C-terminus binding	1.14E-03
44	GO:0004659: prenyltransferase activity	1.14E-03
45	GO:0051861: glycolipid binding	1.14E-03
46	GO:0005459: UDP-galactose transmembrane transporter activity	1.45E-03
47	GO:0008641: small protein activating enzyme activity	1.45E-03
48	GO:0031593: polyubiquitin binding	1.78E-03
49	GO:0004130: cytochrome-c peroxidase activity	1.78E-03
50	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.78E-03
51	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.78E-03
52	GO:0016688: L-ascorbate peroxidase activity	1.78E-03
53	GO:0008200: ion channel inhibitor activity	1.78E-03
54	GO:0004017: adenylate kinase activity	2.14E-03
55	GO:0005347: ATP transmembrane transporter activity	2.14E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	2.14E-03
57	GO:0016831: carboxy-lyase activity	2.52E-03
58	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.52E-03
59	GO:0016887: ATPase activity	3.61E-03
60	GO:0000989: transcription factor activity, transcription factor binding	3.77E-03
61	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.77E-03
62	GO:0000287: magnesium ion binding	4.11E-03
63	GO:0045309: protein phosphorylated amino acid binding	4.22E-03
64	GO:0016844: strictosidine synthase activity	4.22E-03
65	GO:0004568: chitinase activity	4.69E-03
66	GO:0019904: protein domain specific binding	5.19E-03
67	GO:0008559: xenobiotic-transporting ATPase activity	5.19E-03
68	GO:0004161: dimethylallyltranstransferase activity	5.19E-03
69	GO:0051287: NAD binding	5.38E-03
70	GO:0005515: protein binding	5.88E-03
71	GO:0015266: protein channel activity	6.22E-03
72	GO:0004867: serine-type endopeptidase inhibitor activity	7.32E-03
73	GO:0005507: copper ion binding	7.59E-03
74	GO:0020037: heme binding	7.69E-03
75	GO:0004722: protein serine/threonine phosphatase activity	7.82E-03
76	GO:0043130: ubiquitin binding	8.48E-03
77	GO:0031418: L-ascorbic acid binding	8.48E-03
78	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	9.72E-03
79	GO:0008810: cellulase activity	1.10E-02
80	GO:0003735: structural constituent of ribosome	1.15E-02
81	GO:0008514: organic anion transmembrane transporter activity	1.17E-02
82	GO:0030170: pyridoxal phosphate binding	1.19E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.45E-02
84	GO:0016853: isomerase activity	1.45E-02
85	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.60E-02
86	GO:0003684: damaged DNA binding	1.83E-02
87	GO:0016597: amino acid binding	1.99E-02
88	GO:0003729: mRNA binding	2.34E-02
89	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.51E-02
90	GO:0005524: ATP binding	2.56E-02
91	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.66E-02
92	GO:0004222: metalloendopeptidase activity	2.69E-02
93	GO:0050897: cobalt ion binding	2.78E-02
94	GO:0030145: manganese ion binding	2.78E-02
95	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.97E-02
96	GO:0003993: acid phosphatase activity	3.06E-02
97	GO:0008422: beta-glucosidase activity	3.16E-02
98	GO:0005198: structural molecule activity	3.86E-02
99	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.97E-02
100	GO:0045330: aspartyl esterase activity	4.72E-02
101	GO:0045735: nutrient reservoir activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0009506: plasmodesma	2.27E-16
4	GO:0005774: vacuolar membrane	3.28E-15
5	GO:0005783: endoplasmic reticulum	2.10E-11
6	GO:0000502: proteasome complex	1.39E-10
7	GO:0005829: cytosol	5.10E-09
8	GO:0005741: mitochondrial outer membrane	1.29E-08
9	GO:0005618: cell wall	8.84E-07
10	GO:0005839: proteasome core complex	9.05E-07
11	GO:0046930: pore complex	2.52E-06
12	GO:0022626: cytosolic ribosome	2.75E-05
13	GO:0008250: oligosaccharyltransferase complex	3.35E-05
14	GO:0005794: Golgi apparatus	9.25E-05
15	GO:0005773: vacuole	9.77E-05
16	GO:0019773: proteasome core complex, alpha-subunit complex	1.50E-04
17	GO:0009510: plasmodesmatal desmotubule	1.62E-04
18	GO:0045239: tricarboxylic acid cycle enzyme complex	1.62E-04
19	GO:0005788: endoplasmic reticulum lumen	2.15E-04
20	GO:0008541: proteasome regulatory particle, lid subcomplex	3.02E-04
21	GO:0005759: mitochondrial matrix	3.29E-04
22	GO:0009505: plant-type cell wall	3.66E-04
23	GO:0000015: phosphopyruvate hydratase complex	3.69E-04
24	GO:0005789: endoplasmic reticulum membrane	5.75E-04
25	GO:0016020: membrane	5.98E-04
26	GO:0046861: glyoxysomal membrane	6.04E-04
27	GO:0005838: proteasome regulatory particle	6.04E-04
28	GO:0005758: mitochondrial intermembrane space	6.16E-04
29	GO:0071782: endoplasmic reticulum tubular network	8.63E-04
30	GO:0005886: plasma membrane	8.68E-04
31	GO:0009526: plastid envelope	1.14E-03
32	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.14E-03
33	GO:0005576: extracellular region	1.48E-03
34	GO:0000974: Prp19 complex	1.78E-03
35	GO:0005771: multivesicular body	1.78E-03
36	GO:0030904: retromer complex	1.78E-03
37	GO:0009707: chloroplast outer membrane	2.74E-03
38	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.91E-03
39	GO:0005742: mitochondrial outer membrane translocase complex	3.33E-03
40	GO:0000326: protein storage vacuole	3.33E-03
41	GO:0009514: glyoxysome	3.33E-03
42	GO:0022627: cytosolic small ribosomal subunit	3.46E-03
43	GO:0071011: precatalytic spliceosome	4.22E-03
44	GO:0005740: mitochondrial envelope	4.69E-03
45	GO:0071013: catalytic step 2 spliceosome	5.19E-03
46	GO:0005750: mitochondrial respiratory chain complex III	6.76E-03
47	GO:0009507: chloroplast	7.82E-03
48	GO:0005743: mitochondrial inner membrane	8.28E-03
49	GO:0005730: nucleolus	8.68E-03
50	GO:0042651: thylakoid membrane	9.09E-03
51	GO:0070469: respiratory chain	9.09E-03
52	GO:0005739: mitochondrion	1.46E-02
53	GO:0009504: cell plate	1.52E-02
54	GO:0071944: cell periphery	1.75E-02
55	GO:0000325: plant-type vacuole	2.78E-02
56	GO:0015934: large ribosomal subunit	2.78E-02
57	GO:0005737: cytoplasm	2.84E-02
58	GO:0022625: cytosolic large ribosomal subunit	2.99E-02
59	GO:0031902: late endosome membrane	3.35E-02
60	GO:0090406: pollen tube	3.55E-02