Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
2GO:0031145: anaphase-promoting complex-dependent catabolic process1.27E-04
3GO:0010371: regulation of gibberellin biosynthetic process1.89E-04
4GO:0030071: regulation of mitotic metaphase/anaphase transition1.89E-04
5GO:0006221: pyrimidine nucleotide biosynthetic process2.57E-04
6GO:0070897: DNA-templated transcriptional preinitiation complex assembly3.30E-04
7GO:0006811: ion transport3.31E-04
8GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway5.68E-04
9GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.68E-04
10GO:0009415: response to water6.55E-04
11GO:0006972: hyperosmotic response7.44E-04
12GO:0048193: Golgi vesicle transport7.44E-04
13GO:0007346: regulation of mitotic cell cycle9.29E-04
14GO:0035556: intracellular signal transduction1.10E-03
15GO:0050826: response to freezing1.34E-03
16GO:0010468: regulation of gene expression1.81E-03
17GO:0051321: meiotic cell cycle2.04E-03
18GO:0080092: regulation of pollen tube growth2.17E-03
19GO:0009414: response to water deprivation2.41E-03
20GO:0010584: pollen exine formation2.43E-03
21GO:0048653: anther development2.70E-03
22GO:0009960: endosperm development2.84E-03
23GO:0006814: sodium ion transport2.99E-03
24GO:0010183: pollen tube guidance3.13E-03
25GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.28E-03
26GO:0019760: glucosinolate metabolic process3.73E-03
27GO:0010029: regulation of seed germination4.37E-03
28GO:0006950: response to stress4.71E-03
29GO:0016049: cell growth4.88E-03
30GO:0009631: cold acclimation5.58E-03
31GO:0006631: fatty acid metabolic process6.69E-03
32GO:0008283: cell proliferation7.08E-03
33GO:0051707: response to other organism7.08E-03
34GO:0000209: protein polyubiquitination7.28E-03
35GO:0000165: MAPK cascade8.09E-03
36GO:0006812: cation transport8.29E-03
37GO:0006813: potassium ion transport8.71E-03
38GO:0000398: mRNA splicing, via spliceosome1.23E-02
39GO:0006470: protein dephosphorylation1.81E-02
40GO:0009409: response to cold2.07E-02
41GO:0006952: defense response2.18E-02
42GO:0009658: chloroplast organization2.24E-02
43GO:0046777: protein autophosphorylation2.74E-02
44GO:0006629: lipid metabolic process3.45E-02
45GO:0009408: response to heat3.45E-02
46GO:0009734: auxin-activated signaling pathway4.40E-02
RankGO TermAdjusted P value
1GO:0046790: virion binding0.00E+00
2GO:0004127: cytidylate kinase activity7.28E-05
3GO:0019201: nucleotide kinase activity1.89E-04
4GO:0009041: uridylate kinase activity1.89E-04
5GO:0005432: calcium:sodium antiporter activity1.89E-04
6GO:0004143: diacylglycerol kinase activity5.68E-04
7GO:0015491: cation:cation antiporter activity6.55E-04
8GO:0004869: cysteine-type endopeptidase inhibitor activity6.55E-04
9GO:0003951: NAD+ kinase activity7.44E-04
10GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.45E-03
11GO:0017025: TBP-class protein binding1.56E-03
12GO:0004707: MAP kinase activity2.04E-03
13GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.89E-03
14GO:0004721: phosphoprotein phosphatase activity4.71E-03
15GO:0004806: triglyceride lipase activity4.71E-03
16GO:0004693: cyclin-dependent protein serine/threonine kinase activity5.40E-03
17GO:0008234: cysteine-type peptidase activity9.36E-03
18GO:0031625: ubiquitin protein ligase binding9.36E-03
19GO:0003779: actin binding1.09E-02
20GO:0044212: transcription regulatory region DNA binding1.53E-02
21GO:0015297: antiporter activity1.59E-02
22GO:0042802: identical protein binding1.95E-02
23GO:0005524: ATP binding1.97E-02
24GO:0061630: ubiquitin protein ligase activity2.71E-02
25GO:0004722: protein serine/threonine phosphatase activity3.17E-02
RankGO TermAdjusted P value
1GO:0015629: actin cytoskeleton2.30E-03
2GO:0005635: nuclear envelope9.14E-03
3GO:0005681: spliceosomal complex9.79E-03
4GO:0016607: nuclear speck1.00E-02
5GO:0031225: anchored component of membrane1.17E-02
6GO:0005654: nucleoplasm1.28E-02
7GO:0009543: chloroplast thylakoid lumen1.31E-02
8GO:0046658: anchored component of plasma membrane2.00E-02
9GO:0005634: nucleus2.50E-02
10GO:0031969: chloroplast membrane2.61E-02
11GO:0005737: cytoplasm4.60E-02
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Gene type



Gene DE type