co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0015746: citrate transport	0.00E+00
4	GO:0019566: arabinose metabolic process	0.00E+00
5	GO:0006721: terpenoid metabolic process	0.00E+00
6	GO:0042908: xenobiotic transport	0.00E+00
7	GO:0006592: ornithine biosynthetic process	0.00E+00
8	GO:0006012: galactose metabolic process	4.14E-05
9	GO:0097502: mannosylation	1.46E-04
10	GO:0016487: farnesol metabolic process	1.46E-04
11	GO:0031468: nuclear envelope reassembly	1.46E-04
12	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.46E-04
13	GO:0061014: positive regulation of mRNA catabolic process	1.46E-04
14	GO:0010265: SCF complex assembly	1.46E-04
15	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.46E-04
16	GO:0035556: intracellular signal transduction	1.67E-04
17	GO:0009853: photorespiration	3.21E-04
18	GO:0016560: protein import into peroxisome matrix, docking	3.33E-04
19	GO:0019388: galactose catabolic process	3.33E-04
20	GO:0006432: phenylalanyl-tRNA aminoacylation	3.33E-04
21	GO:0019441: tryptophan catabolic process to kynurenine	3.33E-04
22	GO:0097054: L-glutamate biosynthetic process	3.33E-04
23	GO:0006006: glucose metabolic process	3.41E-04
24	GO:0006487: protein N-linked glycosylation	5.33E-04
25	GO:0008333: endosome to lysosome transport	5.47E-04
26	GO:0015940: pantothenate biosynthetic process	5.47E-04
27	GO:0006760: folic acid-containing compound metabolic process	5.47E-04
28	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	5.47E-04
29	GO:0006107: oxaloacetate metabolic process	7.83E-04
30	GO:0006537: glutamate biosynthetic process	7.83E-04
31	GO:0006516: glycoprotein catabolic process	7.83E-04
32	GO:0010587: miRNA catabolic process	7.83E-04
33	GO:0015700: arsenite transport	7.83E-04
34	GO:0009590: detection of gravity	7.83E-04
35	GO:0006221: pyrimidine nucleotide biosynthetic process	1.04E-03
36	GO:0006625: protein targeting to peroxisome	1.04E-03
37	GO:0006749: glutathione metabolic process	1.04E-03
38	GO:0044205: 'de novo' UMP biosynthetic process	1.04E-03
39	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.04E-03
40	GO:0034613: cellular protein localization	1.04E-03
41	GO:0006646: phosphatidylethanolamine biosynthetic process	1.04E-03
42	GO:0019676: ammonia assimilation cycle	1.04E-03
43	GO:0015976: carbon utilization	1.04E-03
44	GO:0005975: carbohydrate metabolic process	1.51E-03
45	GO:0006555: methionine metabolic process	1.61E-03
46	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.61E-03
47	GO:0019509: L-methionine salvage from methylthioadenosine	1.93E-03
48	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.93E-03
49	GO:0009396: folic acid-containing compound biosynthetic process	2.27E-03
50	GO:0070370: cellular heat acclimation	2.27E-03
51	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.27E-03
52	GO:0050790: regulation of catalytic activity	2.27E-03
53	GO:0010044: response to aluminum ion	2.27E-03
54	GO:0055114: oxidation-reduction process	2.48E-03
55	GO:0005978: glycogen biosynthetic process	2.63E-03
56	GO:0006402: mRNA catabolic process	2.63E-03
57	GO:0006506: GPI anchor biosynthetic process	2.63E-03
58	GO:0000028: ribosomal small subunit assembly	2.63E-03
59	GO:0040029: regulation of gene expression, epigenetic	2.63E-03
60	GO:0006526: arginine biosynthetic process	3.00E-03
61	GO:0046685: response to arsenic-containing substance	3.40E-03
62	GO:0035999: tetrahydrofolate interconversion	3.81E-03
63	GO:0006896: Golgi to vacuole transport	4.23E-03
64	GO:0000103: sulfate assimilation	4.23E-03
65	GO:0043069: negative regulation of programmed cell death	4.23E-03
66	GO:0006855: drug transmembrane transport	4.46E-03
67	GO:0010015: root morphogenesis	4.67E-03
68	GO:0052544: defense response by callose deposition in cell wall	4.67E-03
69	GO:0048229: gametophyte development	4.67E-03
70	GO:0051603: proteolysis involved in cellular protein catabolic process	5.33E-03
71	GO:0006829: zinc II ion transport	5.60E-03
72	GO:0006807: nitrogen compound metabolic process	5.60E-03
73	GO:0009691: cytokinin biosynthetic process	5.60E-03
74	GO:0006108: malate metabolic process	5.60E-03
75	GO:0002237: response to molecule of bacterial origin	6.09E-03
76	GO:0007034: vacuolar transport	6.09E-03
77	GO:0007015: actin filament organization	6.09E-03
78	GO:0007031: peroxisome organization	6.59E-03
79	GO:0007030: Golgi organization	6.59E-03
80	GO:0019853: L-ascorbic acid biosynthetic process	6.59E-03
81	GO:0006071: glycerol metabolic process	7.10E-03
82	GO:0006629: lipid metabolic process	7.48E-03
83	GO:0010431: seed maturation	8.73E-03
84	GO:0015992: proton transport	8.73E-03
85	GO:0051260: protein homooligomerization	8.73E-03
86	GO:0031348: negative regulation of defense response	9.30E-03
87	GO:0019748: secondary metabolic process	9.30E-03
88	GO:0001944: vasculature development	9.89E-03
89	GO:0042147: retrograde transport, endosome to Golgi	1.11E-02
90	GO:0015991: ATP hydrolysis coupled proton transport	1.17E-02
91	GO:0042391: regulation of membrane potential	1.17E-02
92	GO:0010051: xylem and phloem pattern formation	1.17E-02
93	GO:0010268: brassinosteroid homeostasis	1.24E-02
94	GO:0006520: cellular amino acid metabolic process	1.24E-02
95	GO:0006662: glycerol ether metabolic process	1.24E-02
96	GO:0061025: membrane fusion	1.30E-02
97	GO:0006623: protein targeting to vacuole	1.37E-02
98	GO:0019252: starch biosynthetic process	1.37E-02
99	GO:0008654: phospholipid biosynthetic process	1.37E-02
100	GO:0016132: brassinosteroid biosynthetic process	1.43E-02
101	GO:0009630: gravitropism	1.50E-02
102	GO:1901657: glycosyl compound metabolic process	1.57E-02
103	GO:0016125: sterol metabolic process	1.64E-02
104	GO:0010286: heat acclimation	1.72E-02
105	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.94E-02
106	GO:0009816: defense response to bacterium, incompatible interaction	1.94E-02
107	GO:0055085: transmembrane transport	2.10E-02
108	GO:0006499: N-terminal protein myristoylation	2.41E-02
109	GO:0009407: toxin catabolic process	2.41E-02
110	GO:0080167: response to karrikin	2.44E-02
111	GO:0010043: response to zinc ion	2.49E-02
112	GO:0045087: innate immune response	2.66E-02
113	GO:0006099: tricarboxylic acid cycle	2.75E-02
114	GO:0034599: cellular response to oxidative stress	2.75E-02
115	GO:0030001: metal ion transport	2.92E-02
116	GO:0006886: intracellular protein transport	3.01E-02
117	GO:0009926: auxin polar transport	3.19E-02
118	GO:0032259: methylation	3.45E-02
119	GO:0009636: response to toxic substance	3.47E-02
120	GO:0009408: response to heat	3.60E-02
121	GO:0006486: protein glycosylation	3.94E-02
122	GO:0006813: potassium ion transport	3.94E-02
123	GO:0008152: metabolic process	3.96E-02
124	GO:0009620: response to fungus	4.75E-02
125	GO:0016569: covalent chromatin modification	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
2	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
4	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
5	GO:0050152: omega-amidase activity	0.00E+00
6	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
7	GO:0015930: glutamate synthase activity	0.00E+00
8	GO:0009702: L-arabinokinase activity	0.00E+00
9	GO:0004151: dihydroorotase activity	0.00E+00
10	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
11	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0047886: farnesol dehydrogenase activity	0.00E+00
13	GO:0008777: acetylornithine deacetylase activity	0.00E+00
14	GO:0042030: ATPase inhibitor activity	0.00E+00
15	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
16	GO:0004034: aldose 1-epimerase activity	1.31E-06
17	GO:0008137: NADH dehydrogenase (ubiquinone) activity	9.39E-05
18	GO:0015137: citrate transmembrane transporter activity	1.46E-04
19	GO:0010013: N-1-naphthylphthalamic acid binding	1.46E-04
20	GO:0004560: alpha-L-fucosidase activity	1.46E-04
21	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.46E-04
22	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.46E-04
23	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.46E-04
24	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.46E-04
25	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.46E-04
26	GO:0080047: GDP-L-galactose phosphorylase activity	1.46E-04
27	GO:0010209: vacuolar sorting signal binding	1.46E-04
28	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	1.46E-04
29	GO:0070006: metalloaminopeptidase activity	1.46E-04
30	GO:0071992: phytochelatin transmembrane transporter activity	1.46E-04
31	GO:0004307: ethanolaminephosphotransferase activity	1.46E-04
32	GO:0016041: glutamate synthase (ferredoxin) activity	1.46E-04
33	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.46E-04
34	GO:0080048: GDP-D-glucose phosphorylase activity	1.46E-04
35	GO:0008559: xenobiotic-transporting ATPase activity	2.59E-04
36	GO:0050897: cobalt ion binding	2.84E-04
37	GO:0030572: phosphatidyltransferase activity	3.33E-04
38	GO:0004826: phenylalanine-tRNA ligase activity	3.33E-04
39	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.33E-04
40	GO:0004534: 5'-3' exoribonuclease activity	3.33E-04
41	GO:0019172: glyoxalase III activity	3.33E-04
42	GO:0004061: arylformamidase activity	3.33E-04
43	GO:0004614: phosphoglucomutase activity	3.33E-04
44	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.47E-04
45	GO:0032947: protein complex scaffold	5.47E-04
46	GO:0004557: alpha-galactosidase activity	5.47E-04
47	GO:0052692: raffinose alpha-galactosidase activity	5.47E-04
48	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.83E-04
49	GO:0005249: voltage-gated potassium channel activity	9.62E-04
50	GO:0008409: 5'-3' exonuclease activity	1.04E-03
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.04E-03
52	GO:0004576: oligosaccharyl transferase activity	1.04E-03
53	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.04E-03
54	GO:0042277: peptide binding	1.04E-03
55	GO:0004335: galactokinase activity	1.04E-03
56	GO:0016853: isomerase activity	1.11E-03
57	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.31E-03
58	GO:0051538: 3 iron, 4 sulfur cluster binding	1.31E-03
59	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.61E-03
60	GO:0051117: ATPase binding	1.61E-03
61	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.61E-03
62	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.61E-03
63	GO:0016597: amino acid binding	1.71E-03
64	GO:0005261: cation channel activity	1.93E-03
65	GO:0004602: glutathione peroxidase activity	1.93E-03
66	GO:0008143: poly(A) binding	2.27E-03
67	GO:0008320: protein transmembrane transporter activity	2.27E-03
68	GO:0005085: guanyl-nucleotide exchange factor activity	2.27E-03
69	GO:0035064: methylated histone binding	2.63E-03
70	GO:0015078: hydrogen ion transmembrane transporter activity	3.00E-03
71	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.40E-03
72	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.40E-03
73	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.40E-03
74	GO:0004177: aminopeptidase activity	4.67E-03
75	GO:0000049: tRNA binding	5.13E-03
76	GO:0004089: carbonate dehydratase activity	5.60E-03
77	GO:0031072: heat shock protein binding	5.60E-03
78	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	6.28E-03
79	GO:0030553: cGMP binding	6.59E-03
80	GO:0030552: cAMP binding	6.59E-03
81	GO:0043130: ubiquitin binding	7.63E-03
82	GO:0003714: transcription corepressor activity	7.63E-03
83	GO:0005216: ion channel activity	8.18E-03
84	GO:0004298: threonine-type endopeptidase activity	8.73E-03
85	GO:0008565: protein transporter activity	1.10E-02
86	GO:0005102: receptor binding	1.11E-02
87	GO:0047134: protein-disulfide reductase activity	1.11E-02
88	GO:0030551: cyclic nucleotide binding	1.17E-02
89	GO:0003824: catalytic activity	1.18E-02
90	GO:0046873: metal ion transmembrane transporter activity	1.24E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	1.30E-02
92	GO:0050662: coenzyme binding	1.30E-02
93	GO:0004197: cysteine-type endopeptidase activity	1.50E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.57E-02
95	GO:0051015: actin filament binding	1.57E-02
96	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.61E-02
97	GO:0008237: metallopeptidase activity	1.72E-02
98	GO:0004672: protein kinase activity	1.83E-02
99	GO:0008168: methyltransferase activity	1.89E-02
100	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.01E-02
101	GO:0102483: scopolin beta-glucosidase activity	2.09E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-02
103	GO:0030246: carbohydrate binding	2.25E-02
104	GO:0015238: drug transmembrane transporter activity	2.33E-02
105	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
106	GO:0005516: calmodulin binding	2.59E-02
107	GO:0008422: beta-glucosidase activity	2.83E-02
108	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.83E-02
109	GO:0042393: histone binding	2.92E-02
110	GO:0051539: 4 iron, 4 sulfur cluster binding	2.92E-02
111	GO:0004364: glutathione transferase activity	3.10E-02
112	GO:0004185: serine-type carboxypeptidase activity	3.19E-02
113	GO:0043621: protein self-association	3.37E-02
114	GO:0035091: phosphatidylinositol binding	3.37E-02
115	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-02
116	GO:0008270: zinc ion binding	3.51E-02
117	GO:0005506: iron ion binding	3.68E-02
118	GO:0004674: protein serine/threonine kinase activity	4.09E-02
119	GO:0008234: cysteine-type peptidase activity	4.24E-02
120	GO:0022857: transmembrane transporter activity	4.85E-02
121	GO:0003779: actin binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	8.45E-10
2	GO:0005747: mitochondrial respiratory chain complex I	5.43E-06
3	GO:1990429: peroxisomal importomer complex	1.46E-04
4	GO:0005783: endoplasmic reticulum	4.92E-04
5	GO:0045271: respiratory chain complex I	5.87E-04
6	GO:0005773: vacuole	7.08E-04
7	GO:0008076: voltage-gated potassium channel complex	7.83E-04
8	GO:0005844: polysome	1.04E-03
9	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.04E-03
10	GO:0008250: oligosaccharyltransferase complex	1.31E-03
11	GO:0005789: endoplasmic reticulum membrane	1.53E-03
12	GO:0030904: retromer complex	1.61E-03
13	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.61E-03
14	GO:0005771: multivesicular body	1.61E-03
15	GO:0010319: stromule	1.62E-03
16	GO:0005885: Arp2/3 protein complex	1.93E-03
17	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.27E-03
18	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.63E-03
19	GO:0009501: amyloplast	2.63E-03
20	GO:0045273: respiratory chain complex II	2.63E-03
21	GO:0000325: plant-type vacuole	2.72E-03
22	GO:0031090: organelle membrane	3.40E-03
23	GO:0005763: mitochondrial small ribosomal subunit	3.40E-03
24	GO:0010494: cytoplasmic stress granule	3.40E-03
25	GO:0031902: late endosome membrane	3.53E-03
26	GO:0030665: clathrin-coated vesicle membrane	3.81E-03
27	GO:0017119: Golgi transport complex	4.23E-03
28	GO:0048471: perinuclear region of cytoplasm	4.67E-03
29	GO:0031966: mitochondrial membrane	4.80E-03
30	GO:0005764: lysosome	6.09E-03
31	GO:0005753: mitochondrial proton-transporting ATP synthase complex	6.59E-03
32	GO:0005737: cytoplasm	7.97E-03
33	GO:0070469: respiratory chain	8.18E-03
34	GO:0005839: proteasome core complex	8.73E-03
35	GO:0005770: late endosome	1.24E-02
36	GO:0032580: Golgi cisterna membrane	1.64E-02
37	GO:0005778: peroxisomal membrane	1.72E-02
38	GO:0000932: P-body	1.86E-02
39	GO:0005774: vacuolar membrane	2.28E-02
40	GO:0009570: chloroplast stroma	2.59E-02
41	GO:0009507: chloroplast	2.97E-02
42	GO:0005856: cytoskeleton	3.47E-02
43	GO:0005886: plasma membrane	3.66E-02
44	GO:0000502: proteasome complex	3.94E-02
45	GO:0043231: intracellular membrane-bounded organelle	3.96E-02
46	GO:0010008: endosome membrane	4.54E-02
47	GO:0016607: nuclear speck	4.54E-02
48	GO:0009536: plastid	4.81E-02
49	GO:0005887: integral component of plasma membrane	4.86E-02