co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010157: response to chlorate	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0006412: translation	4.54E-07
4	GO:0042254: ribosome biogenesis	4.83E-06
5	GO:0071588: hydrogen peroxide mediated signaling pathway	1.97E-05
6	GO:0060627: regulation of vesicle-mediated transport	1.97E-05
7	GO:0009735: response to cytokinin	4.24E-05
8	GO:0010270: photosystem II oxygen evolving complex assembly	5.10E-05
9	GO:0000413: protein peptidyl-prolyl isomerization	6.68E-05
10	GO:2001295: malonyl-CoA biosynthetic process	9.05E-05
11	GO:0006241: CTP biosynthetic process	1.36E-04
12	GO:0006165: nucleoside diphosphate phosphorylation	1.36E-04
13	GO:0006228: UTP biosynthetic process	1.36E-04
14	GO:0006424: glutamyl-tRNA aminoacylation	1.36E-04
15	GO:0006183: GTP biosynthetic process	1.86E-04
16	GO:0045727: positive regulation of translation	1.86E-04
17	GO:0032543: mitochondrial translation	2.40E-04
18	GO:0006828: manganese ion transport	2.97E-04
19	GO:0010019: chloroplast-nucleus signaling pathway	3.57E-04
20	GO:0010555: response to mannitol	3.57E-04
21	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.57E-04
22	GO:0008610: lipid biosynthetic process	4.84E-04
23	GO:0009642: response to light intensity	4.84E-04
24	GO:0009704: de-etiolation	4.84E-04
25	GO:0032544: plastid translation	5.50E-04
26	GO:0006457: protein folding	7.90E-04
27	GO:0006816: calcium ion transport	8.37E-04
28	GO:0009089: lysine biosynthetic process via diaminopimelate	8.37E-04
29	GO:0006633: fatty acid biosynthetic process	8.94E-04
30	GO:0045037: protein import into chloroplast stroma	9.12E-04
31	GO:0019344: cysteine biosynthetic process	1.32E-03
32	GO:0000027: ribosomal large subunit assembly	1.32E-03
33	GO:0051017: actin filament bundle assembly	1.32E-03
34	GO:0006012: galactose metabolic process	1.68E-03
35	GO:0009411: response to UV	1.68E-03
36	GO:0045454: cell redox homeostasis	2.18E-03
37	GO:0000302: response to reactive oxygen species	2.40E-03
38	GO:0008152: metabolic process	2.94E-03
39	GO:0009631: cold acclimation	4.06E-03
40	GO:0034599: cellular response to oxidative stress	4.45E-03
41	GO:0042542: response to hydrogen peroxide	4.99E-03
42	GO:0042538: hyperosmotic salinity response	6.00E-03
43	GO:0006364: rRNA processing	6.31E-03
44	GO:0009585: red, far-red light phototransduction	6.31E-03
45	GO:0042742: defense response to bacterium	9.51E-03
46	GO:0042744: hydrogen peroxide catabolic process	1.03E-02
47	GO:0009409: response to cold	1.29E-02
48	GO:0006886: intracellular protein transport	2.18E-02
49	GO:0009793: embryo development ending in seed dormancy	2.21E-02
50	GO:0009408: response to heat	2.47E-02
51	GO:0009753: response to jasmonic acid	2.60E-02
52	GO:0009734: auxin-activated signaling pathway	3.16E-02
53	GO:0009651: response to salt stress	3.20E-02
54	GO:0055114: oxidation-reduction process	3.27E-02
55	GO:0045893: positive regulation of transcription, DNA-templated	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	1.05E-08
3	GO:0019843: rRNA binding	1.30E-08
4	GO:0051920: peroxiredoxin activity	2.29E-06
5	GO:0016209: antioxidant activity	4.32E-06
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.18E-05
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.97E-05
8	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.10E-05
9	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.10E-05
10	GO:0030267: glyoxylate reductase (NADP) activity	9.05E-05
11	GO:0070402: NADPH binding	9.05E-05
12	GO:0004148: dihydrolipoyl dehydrogenase activity	9.05E-05
13	GO:0004075: biotin carboxylase activity	9.05E-05
14	GO:0004550: nucleoside diphosphate kinase activity	1.36E-04
15	GO:0016836: hydro-lyase activity	1.86E-04
16	GO:0003989: acetyl-CoA carboxylase activity	2.40E-04
17	GO:0004130: cytochrome-c peroxidase activity	2.97E-04
18	GO:0016688: L-ascorbate peroxidase activity	2.97E-04
19	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.57E-04
20	GO:0004620: phospholipase activity	4.19E-04
21	GO:0004034: aldose 1-epimerase activity	4.84E-04
22	GO:0005384: manganese ion transmembrane transporter activity	6.90E-04
23	GO:0015095: magnesium ion transmembrane transporter activity	9.90E-04
24	GO:0008266: poly(U) RNA binding	1.07E-03
25	GO:0005528: FK506 binding	1.32E-03
26	GO:0004601: peroxidase activity	1.48E-03
27	GO:0016853: isomerase activity	2.18E-03
28	GO:0050662: coenzyme binding	2.18E-03
29	GO:0051015: actin filament binding	2.61E-03
30	GO:0005198: structural molecule activity	5.56E-03
31	GO:0051082: unfolded protein binding	8.05E-03
32	GO:0003824: catalytic activity	1.04E-02
33	GO:0003729: mRNA binding	1.42E-02
34	GO:0016787: hydrolase activity	2.05E-02
35	GO:0042803: protein homodimerization activity	2.20E-02
36	GO:0003924: GTPase activity	2.47E-02
37	GO:0005515: protein binding	3.42E-02
38	GO:0046872: metal ion binding	4.22E-02
39	GO:0016740: transferase activity	4.29E-02
40	GO:0030246: carbohydrate binding	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	9.39E-27
3	GO:0009507: chloroplast	2.58E-22
4	GO:0009941: chloroplast envelope	8.16E-21
5	GO:0009579: thylakoid	7.79E-11
6	GO:0009534: chloroplast thylakoid	8.12E-11
7	GO:0005840: ribosome	7.45E-07
8	GO:0009535: chloroplast thylakoid membrane	6.99E-06
9	GO:0031977: thylakoid lumen	7.93E-06
10	GO:0000311: plastid large ribosomal subunit	1.58E-05
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.97E-05
12	GO:0010287: plastoglobule	3.50E-05
13	GO:0009543: chloroplast thylakoid lumen	3.81E-05
14	GO:0009533: chloroplast stromal thylakoid	4.19E-04
15	GO:0000312: plastid small ribosomal subunit	1.07E-03
16	GO:0048046: apoplast	1.32E-03
17	GO:0015629: actin cytoskeleton	1.68E-03
18	GO:0022625: cytosolic large ribosomal subunit	1.92E-03
19	GO:0010319: stromule	2.84E-03
20	GO:0022626: cytosolic ribosome	4.50E-03
21	GO:0005856: cytoskeleton	5.56E-03
22	GO:0022627: cytosolic small ribosomal subunit	1.44E-02
23	GO:0031969: chloroplast membrane	1.87E-02
24	GO:0016020: membrane	2.56E-02
25	GO:0005774: vacuolar membrane	3.31E-02