GO Enrichment Analysis of Co-expressed Genes with
AT3G53850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006907: pinocytosis | 0.00E+00 |
| 2 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 3 | GO:0046900: tetrahydrofolylpolyglutamate metabolic process | 5.94E-05 |
| 4 | GO:0034971: histone H3-R17 methylation | 5.94E-05 |
| 5 | GO:0042371: vitamin K biosynthetic process | 5.94E-05 |
| 6 | GO:0071461: cellular response to redox state | 5.94E-05 |
| 7 | GO:0034970: histone H3-R2 methylation | 5.94E-05 |
| 8 | GO:0034972: histone H3-R26 methylation | 5.94E-05 |
| 9 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 1.44E-04 |
| 10 | GO:0080005: photosystem stoichiometry adjustment | 1.44E-04 |
| 11 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 1.44E-04 |
| 12 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 1.44E-04 |
| 13 | GO:0080185: effector dependent induction by symbiont of host immune response | 1.44E-04 |
| 14 | GO:0033014: tetrapyrrole biosynthetic process | 3.57E-04 |
| 15 | GO:2001141: regulation of RNA biosynthetic process | 3.57E-04 |
| 16 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.57E-04 |
| 17 | GO:0042274: ribosomal small subunit biogenesis | 4.78E-04 |
| 18 | GO:0009765: photosynthesis, light harvesting | 4.78E-04 |
| 19 | GO:0016126: sterol biosynthetic process | 5.73E-04 |
| 20 | GO:0016123: xanthophyll biosynthetic process | 6.05E-04 |
| 21 | GO:0016120: carotene biosynthetic process | 6.05E-04 |
| 22 | GO:0010190: cytochrome b6f complex assembly | 7.40E-04 |
| 23 | GO:0009658: chloroplast organization | 7.67E-04 |
| 24 | GO:0010019: chloroplast-nucleus signaling pathway | 8.82E-04 |
| 25 | GO:1900056: negative regulation of leaf senescence | 1.03E-03 |
| 26 | GO:0048564: photosystem I assembly | 1.18E-03 |
| 27 | GO:0042255: ribosome assembly | 1.18E-03 |
| 28 | GO:0006353: DNA-templated transcription, termination | 1.18E-03 |
| 29 | GO:0071482: cellular response to light stimulus | 1.35E-03 |
| 30 | GO:0006783: heme biosynthetic process | 1.52E-03 |
| 31 | GO:1900426: positive regulation of defense response to bacterium | 1.69E-03 |
| 32 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.69E-03 |
| 33 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.69E-03 |
| 34 | GO:0006535: cysteine biosynthetic process from serine | 1.88E-03 |
| 35 | GO:0051555: flavonol biosynthetic process | 1.88E-03 |
| 36 | GO:0043085: positive regulation of catalytic activity | 2.07E-03 |
| 37 | GO:0006352: DNA-templated transcription, initiation | 2.07E-03 |
| 38 | GO:0009725: response to hormone | 2.47E-03 |
| 39 | GO:0009767: photosynthetic electron transport chain | 2.47E-03 |
| 40 | GO:0006541: glutamine metabolic process | 2.68E-03 |
| 41 | GO:0006289: nucleotide-excision repair | 3.34E-03 |
| 42 | GO:0019344: cysteine biosynthetic process | 3.34E-03 |
| 43 | GO:0007017: microtubule-based process | 3.57E-03 |
| 44 | GO:0016226: iron-sulfur cluster assembly | 4.05E-03 |
| 45 | GO:0080092: regulation of pollen tube growth | 4.05E-03 |
| 46 | GO:0016117: carotenoid biosynthetic process | 4.81E-03 |
| 47 | GO:0008033: tRNA processing | 5.07E-03 |
| 48 | GO:0009958: positive gravitropism | 5.34E-03 |
| 49 | GO:0032502: developmental process | 6.46E-03 |
| 50 | GO:0007264: small GTPase mediated signal transduction | 6.46E-03 |
| 51 | GO:0080167: response to karrikin | 7.26E-03 |
| 52 | GO:0000910: cytokinesis | 7.65E-03 |
| 53 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 8.28E-03 |
| 54 | GO:0006950: response to stress | 8.92E-03 |
| 55 | GO:0015995: chlorophyll biosynthetic process | 8.92E-03 |
| 56 | GO:0006811: ion transport | 1.03E-02 |
| 57 | GO:0007568: aging | 1.06E-02 |
| 58 | GO:0009910: negative regulation of flower development | 1.06E-02 |
| 59 | GO:0009744: response to sucrose | 1.35E-02 |
| 60 | GO:0006260: DNA replication | 1.55E-02 |
| 61 | GO:0009909: regulation of flower development | 1.80E-02 |
| 62 | GO:0009451: RNA modification | 3.22E-02 |
| 63 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.28E-02 |
| 64 | GO:0008380: RNA splicing | 3.60E-02 |
| 65 | GO:0009860: pollen tube growth | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047793: cycloeucalenol cycloisomerase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 5 | GO:0008242: omega peptidase activity | 5.94E-05 |
| 6 | GO:0046906: tetrapyrrole binding | 5.94E-05 |
| 7 | GO:0004325: ferrochelatase activity | 5.94E-05 |
| 8 | GO:0034722: gamma-glutamyl-peptidase activity | 1.44E-04 |
| 9 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 1.44E-04 |
| 10 | GO:0050017: L-3-cyanoalanine synthase activity | 1.44E-04 |
| 11 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 1.44E-04 |
| 12 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 1.44E-04 |
| 13 | GO:0008469: histone-arginine N-methyltransferase activity | 2.46E-04 |
| 14 | GO:0032947: protein complex scaffold | 2.46E-04 |
| 15 | GO:0000254: C-4 methylsterol oxidase activity | 3.57E-04 |
| 16 | GO:0016851: magnesium chelatase activity | 3.57E-04 |
| 17 | GO:0048038: quinone binding | 4.00E-04 |
| 18 | GO:0001053: plastid sigma factor activity | 4.78E-04 |
| 19 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.78E-04 |
| 20 | GO:0016987: sigma factor activity | 4.78E-04 |
| 21 | GO:0004124: cysteine synthase activity | 8.82E-04 |
| 22 | GO:0019899: enzyme binding | 1.03E-03 |
| 23 | GO:0003690: double-stranded DNA binding | 1.63E-03 |
| 24 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.07E-03 |
| 25 | GO:0031072: heat shock protein binding | 2.47E-03 |
| 26 | GO:0003887: DNA-directed DNA polymerase activity | 3.11E-03 |
| 27 | GO:0051536: iron-sulfur cluster binding | 3.34E-03 |
| 28 | GO:0016740: transferase activity | 4.29E-03 |
| 29 | GO:0003727: single-stranded RNA binding | 4.55E-03 |
| 30 | GO:0008080: N-acetyltransferase activity | 5.34E-03 |
| 31 | GO:0004872: receptor activity | 5.89E-03 |
| 32 | GO:0004518: nuclease activity | 6.46E-03 |
| 33 | GO:0008483: transaminase activity | 7.35E-03 |
| 34 | GO:0016491: oxidoreductase activity | 1.16E-02 |
| 35 | GO:0005198: structural molecule activity | 1.47E-02 |
| 36 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.67E-02 |
| 37 | GO:0003777: microtubule motor activity | 1.80E-02 |
| 38 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.93E-02 |
| 39 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.01E-02 |
| 40 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.01E-02 |
| 41 | GO:0016787: hydrolase activity | 2.14E-02 |
| 42 | GO:0051082: unfolded protein binding | 2.15E-02 |
| 43 | GO:0019843: rRNA binding | 2.52E-02 |
| 44 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.57E-02 |
| 45 | GO:0030170: pyridoxal phosphate binding | 2.72E-02 |
| 46 | GO:0008017: microtubule binding | 3.28E-02 |
| 47 | GO:0008194: UDP-glycosyltransferase activity | 3.44E-02 |
| 48 | GO:0005506: iron ion binding | 3.80E-02 |
| 49 | GO:0008168: methyltransferase activity | 4.21E-02 |
| 50 | GO:0046982: protein heterodimerization activity | 4.27E-02 |
| 51 | GO:0004601: peroxidase activity | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 9.12E-10 |
| 2 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.03E-05 |
| 3 | GO:0031969: chloroplast membrane | 1.17E-04 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.78E-04 |
| 5 | GO:0030286: dynein complex | 4.78E-04 |
| 6 | GO:0055035: plastid thylakoid membrane | 6.05E-04 |
| 7 | GO:0009840: chloroplastic endopeptidase Clp complex | 8.82E-04 |
| 8 | GO:0046930: pore complex | 1.35E-03 |
| 9 | GO:0016324: apical plasma membrane | 1.88E-03 |
| 10 | GO:0005875: microtubule associated complex | 3.11E-03 |
| 11 | GO:0042651: thylakoid membrane | 3.57E-03 |
| 12 | GO:0043231: intracellular membrane-bounded organelle | 1.18E-02 |
| 13 | GO:0031966: mitochondrial membrane | 1.59E-02 |
| 14 | GO:0009534: chloroplast thylakoid | 2.31E-02 |
| 15 | GO:0009705: plant-type vacuole membrane | 3.17E-02 |