co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0000025: maltose catabolic process	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0009877: nodulation	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0090627: plant epidermal cell differentiation	0.00E+00
9	GO:0005980: glycogen catabolic process	0.00E+00
10	GO:0010378: temperature compensation of the circadian clock	0.00E+00
11	GO:0005983: starch catabolic process	3.41E-08
12	GO:0009735: response to cytokinin	3.55E-06
13	GO:0010025: wax biosynthetic process	6.25E-06
14	GO:0009409: response to cold	1.22E-05
15	GO:0007623: circadian rhythm	7.98E-05
16	GO:0006461: protein complex assembly	1.32E-04
17	GO:0009913: epidermal cell differentiation	1.90E-04
18	GO:0009631: cold acclimation	2.16E-04
19	GO:0032958: inositol phosphate biosynthetic process	3.73E-04
20	GO:0010028: xanthophyll cycle	3.73E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	3.73E-04
22	GO:0000023: maltose metabolic process	3.73E-04
23	GO:0043489: RNA stabilization	3.73E-04
24	GO:0044262: cellular carbohydrate metabolic process	3.73E-04
25	GO:0071902: positive regulation of protein serine/threonine kinase activity	3.73E-04
26	GO:0009704: de-etiolation	4.18E-04
27	GO:0030091: protein repair	4.18E-04
28	GO:0032544: plastid translation	5.11E-04
29	GO:0048825: cotyledon development	5.38E-04
30	GO:0009585: red, far-red light phototransduction	6.08E-04
31	GO:0042761: very long-chain fatty acid biosynthetic process	7.24E-04
32	GO:0031648: protein destabilization	8.10E-04
33	GO:0016122: xanthophyll metabolic process	8.10E-04
34	GO:0071712: ER-associated misfolded protein catabolic process	8.10E-04
35	GO:0048569: post-embryonic animal organ development	8.10E-04
36	GO:0032527: protein exit from endoplasmic reticulum	8.10E-04
37	GO:0005976: polysaccharide metabolic process	8.10E-04
38	GO:0051170: nuclear import	8.10E-04
39	GO:1901959: positive regulation of cutin biosynthetic process	8.10E-04
40	GO:0009817: defense response to fungus, incompatible interaction	1.30E-03
41	GO:0010623: programmed cell death involved in cell development	1.31E-03
42	GO:0080055: low-affinity nitrate transport	1.31E-03
43	GO:1904278: positive regulation of wax biosynthetic process	1.31E-03
44	GO:0031929: TOR signaling	1.31E-03
45	GO:0010506: regulation of autophagy	1.31E-03
46	GO:0071367: cellular response to brassinosteroid stimulus	1.31E-03
47	GO:0032940: secretion by cell	1.31E-03
48	GO:0071230: cellular response to amino acid stimulus	1.31E-03
49	GO:0000160: phosphorelay signal transduction system	1.39E-03
50	GO:0009266: response to temperature stimulus	1.41E-03
51	GO:0010143: cutin biosynthetic process	1.41E-03
52	GO:0010371: regulation of gibberellin biosynthetic process	1.89E-03
53	GO:0006020: inositol metabolic process	1.89E-03
54	GO:1901000: regulation of response to salt stress	1.89E-03
55	GO:0006241: CTP biosynthetic process	1.89E-03
56	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.89E-03
57	GO:0030100: regulation of endocytosis	1.89E-03
58	GO:0010104: regulation of ethylene-activated signaling pathway	1.89E-03
59	GO:0010731: protein glutathionylation	1.89E-03
60	GO:0006424: glutamyl-tRNA aminoacylation	1.89E-03
61	GO:0006165: nucleoside diphosphate phosphorylation	1.89E-03
62	GO:0006228: UTP biosynthetic process	1.89E-03
63	GO:0007017: microtubule-based process	2.16E-03
64	GO:0006631: fatty acid metabolic process	2.19E-03
65	GO:0010037: response to carbon dioxide	2.54E-03
66	GO:0006808: regulation of nitrogen utilization	2.54E-03
67	GO:0015976: carbon utilization	2.54E-03
68	GO:0010023: proanthocyanidin biosynthetic process	2.54E-03
69	GO:0019464: glycine decarboxylation via glycine cleavage system	2.54E-03
70	GO:0006183: GTP biosynthetic process	2.54E-03
71	GO:0045727: positive regulation of translation	2.54E-03
72	GO:0015994: chlorophyll metabolic process	2.54E-03
73	GO:0071585: detoxification of cadmium ion	2.54E-03
74	GO:0022622: root system development	2.54E-03
75	GO:2000122: negative regulation of stomatal complex development	2.54E-03
76	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	2.54E-03
77	GO:0010600: regulation of auxin biosynthetic process	2.54E-03
78	GO:0045723: positive regulation of fatty acid biosynthetic process	2.54E-03
79	GO:0042991: transcription factor import into nucleus	2.54E-03
80	GO:0010508: positive regulation of autophagy	2.54E-03
81	GO:0010017: red or far-red light signaling pathway	2.59E-03
82	GO:0005975: carbohydrate metabolic process	2.86E-03
83	GO:0006544: glycine metabolic process	3.25E-03
84	GO:0048497: maintenance of floral organ identity	3.25E-03
85	GO:0048578: positive regulation of long-day photoperiodism, flowering	3.25E-03
86	GO:0032543: mitochondrial translation	3.25E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	3.60E-03
88	GO:0042335: cuticle development	3.60E-03
89	GO:0006563: L-serine metabolic process	4.02E-03
90	GO:0042549: photosystem II stabilization	4.02E-03
91	GO:0000470: maturation of LSU-rRNA	4.02E-03
92	GO:0009267: cellular response to starvation	4.02E-03
93	GO:0019252: starch biosynthetic process	4.48E-03
94	GO:0042254: ribosome biogenesis	4.78E-03
95	GO:0000302: response to reactive oxygen species	4.79E-03
96	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.85E-03
97	GO:0010019: chloroplast-nucleus signaling pathway	4.85E-03
98	GO:0009955: adaxial/abaxial pattern specification	4.85E-03
99	GO:0071470: cellular response to osmotic stress	4.85E-03
100	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	4.85E-03
101	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.85E-03
102	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.85E-03
103	GO:0030163: protein catabolic process	5.46E-03
104	GO:0050829: defense response to Gram-negative bacterium	5.73E-03
105	GO:0030307: positive regulation of cell growth	5.73E-03
106	GO:0032880: regulation of protein localization	5.73E-03
107	GO:0010161: red light signaling pathway	5.73E-03
108	GO:0006353: DNA-templated transcription, termination	6.65E-03
109	GO:2000070: regulation of response to water deprivation	6.65E-03
110	GO:0019827: stem cell population maintenance	6.65E-03
111	GO:0010928: regulation of auxin mediated signaling pathway	6.65E-03
112	GO:0008610: lipid biosynthetic process	6.65E-03
113	GO:0005978: glycogen biosynthetic process	6.65E-03
114	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.65E-03
115	GO:0001558: regulation of cell growth	7.64E-03
116	GO:0009657: plastid organization	7.64E-03
117	GO:0015979: photosynthesis	7.89E-03
118	GO:0045454: cell redox homeostasis	8.48E-03
119	GO:0046686: response to cadmium ion	8.53E-03
120	GO:0006783: heme biosynthetic process	8.66E-03
121	GO:0051865: protein autoubiquitination	8.66E-03
122	GO:0010206: photosystem II repair	8.66E-03
123	GO:0005982: starch metabolic process	9.74E-03
124	GO:0035999: tetrahydrofolate interconversion	9.74E-03
125	GO:0006412: translation	9.88E-03
126	GO:0006633: fatty acid biosynthetic process	9.95E-03
127	GO:0006979: response to oxidative stress	9.97E-03
128	GO:0010218: response to far red light	1.00E-02
129	GO:0006782: protoporphyrinogen IX biosynthetic process	1.09E-02
130	GO:0016051: carbohydrate biosynthetic process	1.15E-02
131	GO:0000038: very long-chain fatty acid metabolic process	1.20E-02
132	GO:0009773: photosynthetic electron transport in photosystem I	1.20E-02
133	GO:0009089: lysine biosynthetic process via diaminopimelate	1.20E-02
134	GO:0034599: cellular response to oxidative stress	1.21E-02
135	GO:0045037: protein import into chloroplast stroma	1.33E-02
136	GO:0008361: regulation of cell size	1.33E-02
137	GO:0002213: defense response to insect	1.33E-02
138	GO:0016024: CDP-diacylglycerol biosynthetic process	1.33E-02
139	GO:0042542: response to hydrogen peroxide	1.43E-02
140	GO:0006006: glucose metabolic process	1.45E-02
141	GO:0009718: anthocyanin-containing compound biosynthetic process	1.45E-02
142	GO:0006094: gluconeogenesis	1.45E-02
143	GO:2000012: regulation of auxin polar transport	1.45E-02
144	GO:0010102: lateral root morphogenesis	1.45E-02
145	GO:0009640: photomorphogenesis	1.49E-02
146	GO:0009887: animal organ morphogenesis	1.58E-02
147	GO:0010207: photosystem II assembly	1.58E-02
148	GO:0009636: response to toxic substance	1.68E-02
149	GO:0055114: oxidation-reduction process	1.78E-02
150	GO:0051017: actin filament bundle assembly	1.99E-02
151	GO:0006289: nucleotide-excision repair	1.99E-02
152	GO:0000027: ribosomal large subunit assembly	1.99E-02
153	GO:0030150: protein import into mitochondrial matrix	1.99E-02
154	GO:0009736: cytokinin-activated signaling pathway	2.01E-02
155	GO:0051302: regulation of cell division	2.14E-02
156	GO:0051260: protein homooligomerization	2.29E-02
157	GO:0048511: rhythmic process	2.29E-02
158	GO:0010431: seed maturation	2.29E-02
159	GO:0061077: chaperone-mediated protein folding	2.29E-02
160	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.44E-02
161	GO:0009411: response to UV	2.60E-02
162	GO:0071369: cellular response to ethylene stimulus	2.60E-02
163	GO:0001944: vasculature development	2.60E-02
164	GO:0006012: galactose metabolic process	2.60E-02
165	GO:0071215: cellular response to abscisic acid stimulus	2.60E-02
166	GO:0009686: gibberellin biosynthetic process	2.60E-02
167	GO:0009416: response to light stimulus	2.75E-02
168	GO:0010089: xylem development	2.76E-02
169	GO:0006284: base-excision repair	2.76E-02
170	GO:0008284: positive regulation of cell proliferation	2.92E-02
171	GO:0000271: polysaccharide biosynthetic process	3.08E-02
172	GO:0042631: cellular response to water deprivation	3.08E-02
173	GO:0009958: positive gravitropism	3.25E-02
174	GO:0045489: pectin biosynthetic process	3.25E-02
175	GO:0015986: ATP synthesis coupled proton transport	3.42E-02
176	GO:0042752: regulation of circadian rhythm	3.42E-02
177	GO:0006355: regulation of transcription, DNA-templated	3.45E-02
178	GO:0009749: response to glucose	3.60E-02
179	GO:0009845: seed germination	3.88E-02
180	GO:0010583: response to cyclopentenone	3.96E-02
181	GO:0042744: hydrogen peroxide catabolic process	4.08E-02
182	GO:0009737: response to abscisic acid	4.08E-02
183	GO:0006629: lipid metabolic process	4.15E-02
184	GO:0015031: protein transport	4.18E-02
185	GO:0006310: DNA recombination	4.33E-02
186	GO:0009753: response to jasmonic acid	4.52E-02
187	GO:0008152: metabolic process	4.67E-02
188	GO:0016126: sterol biosynthetic process	4.91E-02
189	GO:0045490: pectin catabolic process	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0008184: glycogen phosphorylase activity	0.00E+00
4	GO:0010303: limit dextrinase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
7	GO:0004645: phosphorylase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0051060: pullulanase activity	0.00E+00
10	GO:0019843: rRNA binding	3.03E-06
11	GO:0008266: poly(U) RNA binding	3.74E-06
12	GO:0004556: alpha-amylase activity	1.90E-04
13	GO:0004130: cytochrome-c peroxidase activity	1.90E-04
14	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.57E-04
15	GO:0004853: uroporphyrinogen decarboxylase activity	3.73E-04
16	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.73E-04
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.73E-04
18	GO:0000829: inositol heptakisphosphate kinase activity	3.73E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.73E-04
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.73E-04
21	GO:0004856: xylulokinase activity	3.73E-04
22	GO:0000828: inositol hexakisphosphate kinase activity	3.73E-04
23	GO:0005534: galactose binding	3.73E-04
24	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.73E-04
25	GO:0019203: carbohydrate phosphatase activity	3.73E-04
26	GO:0016209: antioxidant activity	4.18E-04
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.87E-04
28	GO:0000156: phosphorelay response regulator activity	6.93E-04
29	GO:0003735: structural constituent of ribosome	7.13E-04
30	GO:0050736: O-malonyltransferase activity	8.10E-04
31	GO:0044390: ubiquitin-like protein conjugating enzyme binding	8.10E-04
32	GO:0016868: intramolecular transferase activity, phosphotransferases	8.10E-04
33	GO:0010297: heteropolysaccharide binding	8.10E-04
34	GO:0004750: ribulose-phosphate 3-epimerase activity	8.10E-04
35	GO:0018708: thiol S-methyltransferase activity	8.10E-04
36	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.10E-04
37	GO:0047372: acylglycerol lipase activity	9.70E-04
38	GO:0004565: beta-galactosidase activity	1.25E-03
39	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.31E-03
40	GO:0030267: glyoxylate reductase (NADP) activity	1.31E-03
41	GO:0070402: NADPH binding	1.31E-03
42	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.31E-03
43	GO:0004324: ferredoxin-NADP+ reductase activity	1.31E-03
44	GO:0017150: tRNA dihydrouridine synthase activity	1.31E-03
45	GO:0050734: hydroxycinnamoyltransferase activity	1.31E-03
46	GO:0005504: fatty acid binding	1.31E-03
47	GO:0017108: 5'-flap endonuclease activity	1.31E-03
48	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.76E-03
49	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.76E-03
50	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.76E-03
51	GO:0004550: nucleoside diphosphate kinase activity	1.89E-03
52	GO:0005528: FK506 binding	1.95E-03
53	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	2.54E-03
54	GO:0019104: DNA N-glycosylase activity	2.54E-03
55	GO:0045430: chalcone isomerase activity	2.54E-03
56	GO:0004506: squalene monooxygenase activity	2.54E-03
57	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.54E-03
58	GO:0004372: glycine hydroxymethyltransferase activity	3.25E-03
59	GO:0003959: NADPH dehydrogenase activity	3.25E-03
60	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	3.25E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.25E-03
62	GO:0016740: transferase activity	3.64E-03
63	GO:0016688: L-ascorbate peroxidase activity	4.02E-03
64	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.02E-03
65	GO:2001070: starch binding	4.02E-03
66	GO:0004332: fructose-bisphosphate aldolase activity	4.02E-03
67	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.02E-03
68	GO:0051920: peroxiredoxin activity	4.85E-03
69	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.85E-03
70	GO:0004602: glutathione peroxidase activity	4.85E-03
71	GO:0004620: phospholipase activity	5.73E-03
72	GO:0005200: structural constituent of cytoskeleton	6.18E-03
73	GO:0030674: protein binding, bridging	6.65E-03
74	GO:0015288: porin activity	6.65E-03
75	GO:0004034: aldose 1-epimerase activity	6.65E-03
76	GO:0015078: hydrogen ion transmembrane transporter activity	7.64E-03
77	GO:0030170: pyridoxal phosphate binding	8.49E-03
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.66E-03
79	GO:0015020: glucuronosyltransferase activity	1.09E-02
80	GO:0004864: protein phosphatase inhibitor activity	1.09E-02
81	GO:0003924: GTPase activity	1.17E-02
82	GO:0044183: protein binding involved in protein folding	1.20E-02
83	GO:0015386: potassium:proton antiporter activity	1.20E-02
84	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.33E-02
85	GO:0004364: glutathione transferase activity	1.43E-02
86	GO:0004089: carbonate dehydratase activity	1.45E-02
87	GO:0004022: alcohol dehydrogenase (NAD) activity	1.45E-02
88	GO:0015266: protein channel activity	1.45E-02
89	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.52E-02
90	GO:0008083: growth factor activity	1.58E-02
91	GO:0004190: aspartic-type endopeptidase activity	1.71E-02
92	GO:0008289: lipid binding	1.92E-02
93	GO:0043565: sequence-specific DNA binding	2.12E-02
94	GO:0015079: potassium ion transmembrane transporter activity	2.14E-02
95	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.44E-02
96	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.46E-02
97	GO:0030570: pectate lyase activity	2.60E-02
98	GO:0016874: ligase activity	2.70E-02
99	GO:0016746: transferase activity, transferring acyl groups	2.95E-02
100	GO:0005249: voltage-gated potassium channel activity	3.08E-02
101	GO:0003713: transcription coactivator activity	3.25E-02
102	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.25E-02
103	GO:0001085: RNA polymerase II transcription factor binding	3.25E-02
104	GO:0016853: isomerase activity	3.42E-02
105	GO:0050662: coenzyme binding	3.42E-02
106	GO:0048038: quinone binding	3.78E-02
107	GO:0004518: nuclease activity	3.96E-02
108	GO:0004252: serine-type endopeptidase activity	3.98E-02
109	GO:0016787: hydrolase activity	4.12E-02
110	GO:0051015: actin filament binding	4.14E-02
111	GO:0016791: phosphatase activity	4.33E-02
112	GO:0003684: damaged DNA binding	4.33E-02
113	GO:0016491: oxidoreductase activity	4.43E-02
114	GO:0008237: metallopeptidase activity	4.52E-02
115	GO:0046910: pectinesterase inhibitor activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0033557: Slx1-Slx4 complex	0.00E+00
4	GO:0009570: chloroplast stroma	5.76E-29
5	GO:0009507: chloroplast	1.02E-23
6	GO:0009941: chloroplast envelope	7.01E-22
7	GO:0009534: chloroplast thylakoid	3.84E-21
8	GO:0009535: chloroplast thylakoid membrane	7.85E-17
9	GO:0009579: thylakoid	5.45E-15
10	GO:0009543: chloroplast thylakoid lumen	1.09E-08
11	GO:0031977: thylakoid lumen	1.01E-07
12	GO:0010287: plastoglobule	2.52E-06
13	GO:0009533: chloroplast stromal thylakoid	9.05E-06
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.73E-04
15	GO:0045298: tubulin complex	6.13E-04
16	GO:0010319: stromule	8.09E-04
17	GO:0009295: nucleoid	8.09E-04
18	GO:0030093: chloroplast photosystem I	8.10E-04
19	GO:0000311: plastid large ribosomal subunit	1.11E-03
20	GO:0005840: ribosome	1.18E-03
21	GO:0009508: plastid chromosome	1.25E-03
22	GO:0031931: TORC1 complex	1.31E-03
23	GO:0030095: chloroplast photosystem II	1.41E-03
24	GO:0036513: Derlin-1 retrotranslocation complex	1.89E-03
25	GO:0008076: voltage-gated potassium channel complex	1.89E-03
26	GO:0009527: plastid outer membrane	2.54E-03
27	GO:0048046: apoplast	3.76E-03
28	GO:0005798: Golgi-associated vesicle	4.02E-03
29	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.02E-03
30	GO:0016020: membrane	4.87E-03
31	GO:0031305: integral component of mitochondrial inner membrane	6.65E-03
32	GO:0009501: amyloplast	6.65E-03
33	GO:0009538: photosystem I reaction center	6.65E-03
34	GO:0046930: pore complex	7.64E-03
35	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	7.64E-03
36	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.66E-03
37	GO:0042644: chloroplast nucleoid	8.66E-03
38	GO:0000312: plastid small ribosomal subunit	1.58E-02
39	GO:0005769: early endosome	1.85E-02
40	GO:0015629: actin cytoskeleton	2.60E-02
41	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.76E-02
42	GO:0009523: photosystem II	3.60E-02
43	GO:0009536: plastid	3.95E-02
44	GO:0009505: plant-type cell wall	4.09E-02
45	GO:0071944: cell periphery	4.14E-02
46	GO:0030529: intracellular ribonucleoprotein complex	4.91E-02