Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009264: deoxyribonucleotide catabolic process0.00E+00
2GO:0046487: glyoxylate metabolic process0.00E+00
3GO:0007530: sex determination0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:0019750: chloroplast localization0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0001881: receptor recycling0.00E+00
8GO:0000740: nuclear membrane fusion0.00E+00
9GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
10GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
11GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
12GO:0006412: translation1.64E-144
13GO:0042254: ribosome biogenesis2.06E-57
14GO:0006511: ubiquitin-dependent protein catabolic process1.81E-11
15GO:0000027: ribosomal large subunit assembly1.18E-10
16GO:0000028: ribosomal small subunit assembly4.76E-08
17GO:0006626: protein targeting to mitochondrion1.61E-06
18GO:0000387: spliceosomal snRNP assembly1.17E-05
19GO:0009955: adaxial/abaxial pattern specification4.74E-05
20GO:1902626: assembly of large subunit precursor of preribosome9.94E-05
21GO:0002181: cytoplasmic translation9.94E-05
22GO:0000398: mRNA splicing, via spliceosome1.18E-04
23GO:0009735: response to cytokinin1.25E-04
24GO:0000413: protein peptidyl-prolyl isomerization2.99E-04
25GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.30E-04
26GO:0006820: anion transport4.37E-04
27GO:0006414: translational elongation6.29E-04
28GO:0043248: proteasome assembly6.92E-04
29GO:0045040: protein import into mitochondrial outer membrane6.92E-04
30GO:2001006: regulation of cellulose biosynthetic process8.71E-04
31GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.71E-04
32GO:0018002: N-terminal peptidyl-glutamic acid acetylation8.71E-04
33GO:0032365: intracellular lipid transport8.71E-04
34GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.71E-04
35GO:0006407: rRNA export from nucleus8.71E-04
36GO:1901349: glucosinolate transport8.71E-04
37GO:0090449: phloem glucosinolate loading8.71E-04
38GO:0006475: internal protein amino acid acetylation8.71E-04
39GO:0015801: aromatic amino acid transport8.71E-04
40GO:0017198: N-terminal peptidyl-serine acetylation8.71E-04
41GO:0030490: maturation of SSU-rRNA8.71E-04
42GO:0051603: proteolysis involved in cellular protein catabolic process1.03E-03
43GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.16E-03
44GO:0061077: chaperone-mediated protein folding1.19E-03
45GO:0015992: proton transport1.19E-03
46GO:0009651: response to salt stress1.34E-03
47GO:0048569: post-embryonic animal organ development1.89E-03
48GO:0006452: translational frameshifting1.89E-03
49GO:0010198: synergid death1.89E-03
50GO:0015786: UDP-glucose transport1.89E-03
51GO:0051788: response to misfolded protein1.89E-03
52GO:0006432: phenylalanyl-tRNA aminoacylation1.89E-03
53GO:0045905: positive regulation of translational termination1.89E-03
54GO:0071668: plant-type cell wall assembly1.89E-03
55GO:0045901: positive regulation of translational elongation1.89E-03
56GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.89E-03
57GO:0045041: protein import into mitochondrial intermembrane space1.89E-03
58GO:0098656: anion transmembrane transport2.13E-03
59GO:0009245: lipid A biosynthetic process2.13E-03
60GO:0046686: response to cadmium ion2.46E-03
61GO:0090506: axillary shoot meristem initiation3.13E-03
62GO:0010452: histone H3-K36 methylation3.13E-03
63GO:0008333: endosome to lysosome transport3.13E-03
64GO:1904278: positive regulation of wax biosynthetic process3.13E-03
65GO:0009150: purine ribonucleotide metabolic process3.13E-03
66GO:0045793: positive regulation of cell size3.13E-03
67GO:0015783: GDP-fucose transport3.13E-03
68GO:0034227: tRNA thio-modification3.13E-03
69GO:0042256: mature ribosome assembly3.13E-03
70GO:0009965: leaf morphogenesis3.26E-03
71GO:0009793: embryo development ending in seed dormancy3.78E-03
72GO:0016925: protein sumoylation3.93E-03
73GO:0070301: cellular response to hydrogen peroxide4.57E-03
74GO:0051085: chaperone mediated protein folding requiring cofactor4.57E-03
75GO:0006241: CTP biosynthetic process4.57E-03
76GO:0072334: UDP-galactose transmembrane transport4.57E-03
77GO:0009647: skotomorphogenesis4.57E-03
78GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.57E-03
79GO:0006165: nucleoside diphosphate phosphorylation4.57E-03
80GO:0006228: UTP biosynthetic process4.57E-03
81GO:0006164: purine nucleotide biosynthetic process4.57E-03
82GO:0006168: adenine salvage4.57E-03
83GO:0009558: embryo sac cellularization4.57E-03
84GO:0046513: ceramide biosynthetic process4.57E-03
85GO:0032877: positive regulation of DNA endoreduplication4.57E-03
86GO:0046836: glycolipid transport4.57E-03
87GO:0006166: purine ribonucleoside salvage4.57E-03
88GO:0006446: regulation of translational initiation5.07E-03
89GO:0042274: ribosomal small subunit biogenesis6.18E-03
90GO:0006183: GTP biosynthetic process6.18E-03
91GO:0010363: regulation of plant-type hypersensitive response6.18E-03
92GO:2000032: regulation of secondary shoot formation6.18E-03
93GO:0051781: positive regulation of cell division6.18E-03
94GO:0030150: protein import into mitochondrial matrix7.07E-03
95GO:0006289: nucleotide-excision repair7.07E-03
96GO:0006487: protein N-linked glycosylation7.07E-03
97GO:0010117: photoprotection7.97E-03
98GO:0097428: protein maturation by iron-sulfur cluster transfer7.97E-03
99GO:0007029: endoplasmic reticulum organization7.97E-03
100GO:1902183: regulation of shoot apical meristem development7.97E-03
101GO:0044209: AMP salvage7.97E-03
102GO:0051568: histone H3-K4 methylation9.92E-03
103GO:0000470: maturation of LSU-rRNA9.92E-03
104GO:0001731: formation of translation preinitiation complex9.92E-03
105GO:1901001: negative regulation of response to salt stress1.20E-02
106GO:0000911: cytokinesis by cell plate formation1.20E-02
107GO:0006458: 'de novo' protein folding1.20E-02
108GO:0042026: protein refolding1.20E-02
109GO:0098655: cation transmembrane transport1.20E-02
110GO:0006120: mitochondrial electron transport, NADH to ubiquinone1.20E-02
111GO:0000245: spliceosomal complex assembly1.20E-02
112GO:0009554: megasporogenesis1.20E-02
113GO:0008283: cell proliferation1.27E-02
114GO:0015991: ATP hydrolysis coupled proton transport1.32E-02
115GO:0048528: post-embryonic root development1.43E-02
116GO:1900056: negative regulation of leaf senescence1.43E-02
117GO:0006662: glycerol ether metabolic process1.43E-02
118GO:0032880: regulation of protein localization1.43E-02
119GO:0006413: translational initiation1.54E-02
120GO:0009690: cytokinin metabolic process1.66E-02
121GO:0006506: GPI anchor biosynthetic process1.66E-02
122GO:0031540: regulation of anthocyanin biosynthetic process1.66E-02
123GO:0009231: riboflavin biosynthetic process1.66E-02
124GO:0022900: electron transport chain1.92E-02
125GO:0010204: defense response signaling pathway, resistance gene-independent1.92E-02
126GO:0009808: lignin metabolic process1.92E-02
127GO:0030163: protein catabolic process2.01E-02
128GO:0009409: response to cold2.01E-02
129GO:0006457: protein folding2.03E-02
130GO:0046685: response to arsenic-containing substance2.18E-02
131GO:0010206: photosystem II repair2.18E-02
132GO:0006189: 'de novo' IMP biosynthetic process2.18E-02
133GO:0048589: developmental growth2.18E-02
134GO:0009060: aerobic respiration2.18E-02
135GO:0015780: nucleotide-sugar transport2.18E-02
136GO:0042761: very long-chain fatty acid biosynthetic process2.46E-02
137GO:0009870: defense response signaling pathway, resistance gene-dependent2.74E-02
138GO:0000103: sulfate assimilation2.74E-02
139GO:0043069: negative regulation of programmed cell death2.74E-02
140GO:0045036: protein targeting to chloroplast2.74E-02
141GO:0016441: posttranscriptional gene silencing2.74E-02
142GO:0010015: root morphogenesis3.04E-02
143GO:0006913: nucleocytoplasmic transport3.04E-02
144GO:0015770: sucrose transport3.04E-02
145GO:0008361: regulation of cell size3.35E-02
146GO:0006790: sulfur compound metabolic process3.35E-02
147GO:0010628: positive regulation of gene expression3.67E-02
148GO:0010102: lateral root morphogenesis3.67E-02
149GO:0006499: N-terminal protein myristoylation3.69E-02
150GO:0009910: negative regulation of flower development3.87E-02
151GO:0010043: response to zinc ion3.87E-02
152GO:0048467: gynoecium development4.00E-02
153GO:0007034: vacuolar transport4.00E-02
154GO:0009853: photorespiration4.24E-02
155GO:0007030: Golgi organization4.34E-02
156GO:0010039: response to iron ion4.34E-02
157GO:0034599: cellular response to oxidative stress4.43E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:0004746: riboflavin synthase activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0003735: structural constituent of ribosome2.10E-186
5GO:0003729: mRNA binding4.76E-37
6GO:0004298: threonine-type endopeptidase activity1.37E-23
7GO:0019843: rRNA binding3.63E-13
8GO:0008233: peptidase activity3.42E-11
9GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.79E-05
10GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.62E-05
11GO:0015288: porin activity1.03E-04
12GO:0008308: voltage-gated anion channel activity1.41E-04
13GO:0008097: 5S rRNA binding2.03E-04
14GO:0001055: RNA polymerase II activity2.38E-04
15GO:0004576: oligosaccharyl transferase activity3.36E-04
16GO:0003746: translation elongation factor activity3.54E-04
17GO:0001054: RNA polymerase I activity3.64E-04
18GO:0001056: RNA polymerase III activity4.37E-04
19GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity5.00E-04
20GO:0031386: protein tag5.00E-04
21GO:0031177: phosphopantetheine binding6.92E-04
22GO:1990189: peptide-serine-N-acetyltransferase activity8.71E-04
23GO:1990190: peptide-glutamate-N-acetyltransferase activity8.71E-04
24GO:0005080: protein kinase C binding8.71E-04
25GO:0090448: glucosinolate:proton symporter activity8.71E-04
26GO:0035614: snRNA stem-loop binding8.71E-04
27GO:0000035: acyl binding9.12E-04
28GO:0008121: ubiquinol-cytochrome-c reductase activity1.16E-03
29GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.45E-03
30GO:0043022: ribosome binding1.45E-03
31GO:0015173: aromatic amino acid transmembrane transporter activity1.89E-03
32GO:0004750: ribulose-phosphate 3-epimerase activity1.89E-03
33GO:0032934: sterol binding1.89E-03
34GO:0004826: phenylalanine-tRNA ligase activity1.89E-03
35GO:0030619: U1 snRNA binding1.89E-03
36GO:0050291: sphingosine N-acyltransferase activity1.89E-03
37GO:0008430: selenium binding3.13E-03
38GO:0005047: signal recognition particle binding3.13E-03
39GO:0008253: 5'-nucleotidase activity3.13E-03
40GO:0070181: small ribosomal subunit rRNA binding3.13E-03
41GO:0005457: GDP-fucose transmembrane transporter activity3.13E-03
42GO:0070180: large ribosomal subunit rRNA binding3.13E-03
43GO:0046961: proton-transporting ATPase activity, rotational mechanism3.43E-03
44GO:0044183: protein binding involved in protein folding3.43E-03
45GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.32E-03
46GO:0003723: RNA binding4.46E-03
47GO:0015266: protein channel activity4.48E-03
48GO:0017089: glycolipid transporter activity4.57E-03
49GO:0003999: adenine phosphoribosyltransferase activity4.57E-03
50GO:0022890: inorganic cation transmembrane transporter activity4.57E-03
51GO:0005460: UDP-glucose transmembrane transporter activity4.57E-03
52GO:0004550: nucleoside diphosphate kinase activity4.57E-03
53GO:0047627: adenylylsulfatase activity4.57E-03
54GO:0051861: glycolipid binding6.18E-03
55GO:0070628: proteasome binding6.18E-03
56GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances6.18E-03
57GO:0016004: phospholipase activator activity6.18E-03
58GO:0010011: auxin binding6.18E-03
59GO:0005528: FK506 binding7.07E-03
60GO:0005459: UDP-galactose transmembrane transporter activity7.97E-03
61GO:0005275: amine transmembrane transporter activity7.97E-03
62GO:0031593: polyubiquitin binding9.92E-03
63GO:0051920: peroxiredoxin activity1.20E-02
64GO:0005347: ATP transmembrane transporter activity1.20E-02
65GO:0047134: protein-disulfide reductase activity1.22E-02
66GO:0005338: nucleotide-sugar transmembrane transporter activity1.43E-02
67GO:0042162: telomeric DNA binding1.43E-02
68GO:0004791: thioredoxin-disulfide reductase activity1.54E-02
69GO:0016209: antioxidant activity1.66E-02
70GO:0008137: NADH dehydrogenase (ubiquinone) activity1.77E-02
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.01E-02
72GO:0003743: translation initiation factor activity2.16E-02
73GO:0000989: transcription factor activity, transcription factor binding2.18E-02
74GO:0051082: unfolded protein binding2.89E-02
75GO:0015035: protein disulfide oxidoreductase activity3.00E-02
76GO:0008515: sucrose transmembrane transporter activity3.04E-02
77GO:0004129: cytochrome-c oxidase activity3.04E-02
78GO:0008794: arsenate reductase (glutaredoxin) activity3.04E-02
79GO:0000049: tRNA binding3.35E-02
80GO:0031072: heat shock protein binding3.67E-02
81GO:0050897: cobalt ion binding3.87E-02
82GO:0004175: endopeptidase activity4.00E-02
83GO:0003697: single-stranded DNA binding4.24E-02
84GO:0051119: sugar transmembrane transporter activity4.34E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
3GO:0043186: P granule0.00E+00
4GO:0005675: holo TFIIH complex0.00E+00
5GO:0022626: cytosolic ribosome2.86E-137
6GO:0005840: ribosome2.95E-127
7GO:0022625: cytosolic large ribosomal subunit1.13E-111
8GO:0022627: cytosolic small ribosomal subunit1.20E-82
9GO:0005829: cytosol8.42E-48
10GO:0005737: cytoplasm2.33E-37
11GO:0005730: nucleolus6.69E-37
12GO:0005839: proteasome core complex1.37E-23
13GO:0009506: plasmodesma2.43E-23
14GO:0005774: vacuolar membrane3.97E-21
15GO:0000502: proteasome complex4.60E-21
16GO:0015934: large ribosomal subunit2.07E-17
17GO:0005773: vacuole9.24E-15
18GO:0019773: proteasome core complex, alpha-subunit complex6.11E-14
19GO:0016020: membrane5.31E-12
20GO:0015935: small ribosomal subunit1.21E-08
21GO:0005618: cell wall5.68E-08
22GO:0005732: small nucleolar ribonucleoprotein complex1.54E-06
23GO:0009507: chloroplast2.62E-06
24GO:0005742: mitochondrial outer membrane translocase complex5.09E-06
25GO:0071011: precatalytic spliceosome1.17E-05
26GO:0071013: catalytic step 2 spliceosome2.31E-05
27GO:0005665: DNA-directed RNA polymerase II, core complex3.10E-05
28GO:0019013: viral nucleocapsid4.05E-05
29GO:0000419: DNA-directed RNA polymerase V complex8.13E-05
30GO:0005758: mitochondrial intermembrane space9.94E-05
31GO:0034719: SMN-Sm protein complex9.94E-05
32GO:0005853: eukaryotic translation elongation factor 1 complex9.94E-05
33GO:0046930: pore complex1.41E-04
34GO:0005741: mitochondrial outer membrane1.43E-04
35GO:0005886: plasma membrane1.72E-04
36GO:0005736: DNA-directed RNA polymerase I complex1.86E-04
37GO:0005685: U1 snRNP1.86E-04
38GO:0005666: DNA-directed RNA polymerase III complex2.38E-04
39GO:0005682: U5 snRNP3.36E-04
40GO:0097526: spliceosomal tri-snRNP complex5.00E-04
41GO:0008250: oligosaccharyltransferase complex5.00E-04
42GO:0005687: U4 snRNP5.00E-04
43GO:0005750: mitochondrial respiratory chain complex III6.09E-04
44GO:0005771: multivesicular body6.92E-04
45GO:0005783: endoplasmic reticulum7.39E-04
46GO:0072546: ER membrane protein complex8.71E-04
47GO:0030686: 90S preribosome8.71E-04
48GO:0005689: U12-type spliceosomal complex9.12E-04
49GO:0070469: respiratory chain1.05E-03
50GO:0005681: spliceosomal complex1.30E-03
51GO:0005747: mitochondrial respiratory chain complex I1.38E-03
52GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain1.89E-03
53GO:0071010: prespliceosome1.89E-03
54GO:0035145: exon-exon junction complex1.89E-03
55GO:0031415: NatA complex1.89E-03
56GO:0005697: telomerase holoenzyme complex1.89E-03
57GO:0005686: U2 snRNP2.96E-03
58GO:0000418: DNA-directed RNA polymerase IV complex2.96E-03
59GO:0000439: core TFIIH complex3.13E-03
60GO:0034715: pICln-Sm protein complex3.13E-03
61GO:0008541: proteasome regulatory particle, lid subcomplex3.43E-03
62GO:0033180: proton-transporting V-type ATPase, V1 domain4.57E-03
63GO:1990726: Lsm1-7-Pat1 complex4.57E-03
64GO:0005788: endoplasmic reticulum lumen5.13E-03
65GO:0016593: Cdc73/Paf1 complex6.18E-03
66GO:0009526: plastid envelope6.18E-03
67GO:0016471: vacuolar proton-transporting V-type ATPase complex6.18E-03
68GO:0045271: respiratory chain complex I7.81E-03
69GO:0005746: mitochondrial respiratory chain7.97E-03
70GO:0030904: retromer complex9.92E-03
71GO:0016282: eukaryotic 43S preinitiation complex9.92E-03
72GO:0000974: Prp19 complex9.92E-03
73GO:0000243: commitment complex9.92E-03
74GO:0033290: eukaryotic 48S preinitiation complex1.20E-02
75GO:0005762: mitochondrial large ribosomal subunit1.20E-02
76GO:0016272: prefoldin complex1.20E-02
77GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.66E-02
78GO:0005688: U6 snRNP1.66E-02
79GO:0071004: U2-type prespliceosome1.66E-02
80GO:0045273: respiratory chain complex II1.66E-02
81GO:0005622: intracellular1.67E-02
82GO:0046540: U4/U6 x U5 tri-snRNP complex1.92E-02
83GO:0031090: organelle membrane2.18E-02
84GO:0031901: early endosome membrane2.18E-02
85GO:0016604: nuclear body2.46E-02
86GO:0015030: Cajal body2.46E-02
87GO:0005743: mitochondrial inner membrane2.58E-02
88GO:0005852: eukaryotic translation initiation factor 3 complex3.04E-02
89GO:0009707: chloroplast outer membrane3.35E-02
90GO:0031307: integral component of mitochondrial outer membrane3.35E-02
91GO:0009536: plastid3.51E-02
92GO:0009508: plastid chromosome3.67E-02
93GO:0005753: mitochondrial proton-transporting ATP synthase complex4.34E-02
94GO:0005795: Golgi stack4.34E-02
95GO:0005769: early endosome4.69E-02
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Gene type



Gene DE type