co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006862: nucleotide transport	0.00E+00
2	GO:0010046: response to mycotoxin	0.00E+00
3	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
4	GO:0009268: response to pH	0.00E+00
5	GO:0009737: response to abscisic acid	3.54E-05
6	GO:0009415: response to water	5.09E-05
7	GO:2000070: regulation of response to water deprivation	5.09E-05
8	GO:0051180: vitamin transport	9.33E-05
9	GO:0030974: thiamine pyrophosphate transport	9.33E-05
10	GO:0009966: regulation of signal transduction	9.33E-05
11	GO:2000030: regulation of response to red or far red light	2.20E-04
12	GO:0015893: drug transport	2.20E-04
13	GO:0006741: NADP biosynthetic process	2.20E-04
14	GO:0046939: nucleotide phosphorylation	2.20E-04
15	GO:0042754: negative regulation of circadian rhythm	2.20E-04
16	GO:0009611: response to wounding	2.64E-04
17	GO:0009695: jasmonic acid biosynthetic process	3.24E-04
18	GO:0010200: response to chitin	3.38E-04
19	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	3.67E-04
20	GO:0046168: glycerol-3-phosphate catabolic process	3.67E-04
21	GO:0080168: abscisic acid transport	3.67E-04
22	GO:0006081: cellular aldehyde metabolic process	3.67E-04
23	GO:0019674: NAD metabolic process	3.67E-04
24	GO:0006072: glycerol-3-phosphate metabolic process	5.28E-04
25	GO:0009399: nitrogen fixation	5.28E-04
26	GO:0033014: tetrapyrrole biosynthetic process	5.28E-04
27	GO:0048530: fruit morphogenesis	5.28E-04
28	GO:0009413: response to flooding	5.28E-04
29	GO:0019363: pyridine nucleotide biosynthetic process	5.28E-04
30	GO:0006536: glutamate metabolic process	7.02E-04
31	GO:0034440: lipid oxidation	7.02E-04
32	GO:0009694: jasmonic acid metabolic process	7.02E-04
33	GO:0009873: ethylene-activated signaling pathway	8.64E-04
34	GO:0009247: glycolipid biosynthetic process	8.88E-04
35	GO:0045487: gibberellin catabolic process	8.88E-04
36	GO:0010286: heat acclimation	9.05E-04
37	GO:0006468: protein phosphorylation	1.17E-03
38	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.29E-03
39	GO:0080086: stamen filament development	1.29E-03
40	GO:0009631: cold acclimation	1.50E-03
41	GO:0071669: plant-type cell wall organization or biogenesis	1.51E-03
42	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.51E-03
43	GO:0006401: RNA catabolic process	1.51E-03
44	GO:0006955: immune response	1.51E-03
45	GO:0019375: galactolipid biosynthetic process	1.75E-03
46	GO:0006970: response to osmotic stress	1.76E-03
47	GO:0006839: mitochondrial transport	1.86E-03
48	GO:0009699: phenylpropanoid biosynthetic process	2.00E-03
49	GO:0010345: suberin biosynthetic process	2.25E-03
50	GO:0006783: heme biosynthetic process	2.25E-03
51	GO:0006779: porphyrin-containing compound biosynthetic process	2.52E-03
52	GO:2000280: regulation of root development	2.52E-03
53	GO:0006782: protoporphyrinogen IX biosynthetic process	2.80E-03
54	GO:0055062: phosphate ion homeostasis	2.80E-03
55	GO:0048829: root cap development	2.80E-03
56	GO:0010224: response to UV-B	2.91E-03
57	GO:0010015: root morphogenesis	3.09E-03
58	GO:0006820: anion transport	3.38E-03
59	GO:0071365: cellular response to auxin stimulus	3.38E-03
60	GO:0009620: response to fungus	3.65E-03
61	GO:0018107: peptidyl-threonine phosphorylation	3.69E-03
62	GO:0009753: response to jasmonic acid	3.76E-03
63	GO:0010167: response to nitrate	4.33E-03
64	GO:0009901: anther dehiscence	4.33E-03
65	GO:2000377: regulation of reactive oxygen species metabolic process	5.01E-03
66	GO:0031408: oxylipin biosynthetic process	5.72E-03
67	GO:0016998: cell wall macromolecule catabolic process	5.72E-03
68	GO:0030433: ubiquitin-dependent ERAD pathway	6.09E-03
69	GO:0031348: negative regulation of defense response	6.09E-03
70	GO:0009409: response to cold	6.40E-03
71	GO:0009686: gibberellin biosynthetic process	6.47E-03
72	GO:0040007: growth	6.47E-03
73	GO:0048653: anther development	7.65E-03
74	GO:0000271: polysaccharide biosynthetic process	7.65E-03
75	GO:0009958: positive gravitropism	8.06E-03
76	GO:0048544: recognition of pollen	8.47E-03
77	GO:0009749: response to glucose	8.90E-03
78	GO:0010193: response to ozone	9.33E-03
79	GO:0009639: response to red or far red light	1.07E-02
80	GO:0010027: thylakoid membrane organization	1.21E-02
81	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.26E-02
82	GO:0009627: systemic acquired resistance	1.31E-02
83	GO:0015995: chlorophyll biosynthetic process	1.36E-02
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.37E-02
85	GO:0030244: cellulose biosynthetic process	1.46E-02
86	GO:0010311: lateral root formation	1.51E-02
87	GO:0009832: plant-type cell wall biogenesis	1.51E-02
88	GO:0048527: lateral root development	1.62E-02
89	GO:0010119: regulation of stomatal movement	1.62E-02
90	GO:0009414: response to water deprivation	1.69E-02
91	GO:0045087: innate immune response	1.73E-02
92	GO:0051707: response to other organism	2.07E-02
93	GO:0009640: photomorphogenesis	2.07E-02
94	GO:0050832: defense response to fungus	2.09E-02
95	GO:0009644: response to high light intensity	2.18E-02
96	GO:0006855: drug transmembrane transport	2.31E-02
97	GO:0009846: pollen germination	2.43E-02
98	GO:0009809: lignin biosynthetic process	2.55E-02
99	GO:0006364: rRNA processing	2.55E-02
100	GO:0009585: red, far-red light phototransduction	2.55E-02
101	GO:0005975: carbohydrate metabolic process	2.95E-02
102	GO:0042545: cell wall modification	3.21E-02
103	GO:0018105: peptidyl-serine phosphorylation	3.35E-02
104	GO:0009738: abscisic acid-activated signaling pathway	3.36E-02
105	GO:0009742: brassinosteroid mediated signaling pathway	3.42E-02
106	GO:0000398: mRNA splicing, via spliceosome	3.64E-02
107	GO:0009790: embryo development	4.30E-02
108	GO:0006633: fatty acid biosynthetic process	4.53E-02
109	GO:0007623: circadian rhythm	4.84E-02
110	GO:0045490: pectin catabolic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
2	GO:0070566: adenylyltransferase activity	0.00E+00
3	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
4	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
5	GO:0090422: thiamine pyrophosphate transporter activity	9.33E-05
6	GO:0090440: abscisic acid transporter activity	9.33E-05
7	GO:0042736: NADH kinase activity	9.33E-05
8	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.20E-04
9	GO:0008883: glutamyl-tRNA reductase activity	2.20E-04
10	GO:0001047: core promoter binding	2.20E-04
11	GO:0046423: allene-oxide cyclase activity	3.67E-04
12	GO:0004383: guanylate cyclase activity	3.67E-04
13	GO:0016165: linoleate 13S-lipoxygenase activity	3.67E-04
14	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.67E-04
15	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.67E-04
16	GO:0019201: nucleotide kinase activity	5.28E-04
17	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	5.28E-04
18	GO:0001653: peptide receptor activity	5.28E-04
19	GO:0035250: UDP-galactosyltransferase activity	5.28E-04
20	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	5.28E-04
21	GO:0004351: glutamate decarboxylase activity	5.28E-04
22	GO:0043015: gamma-tubulin binding	7.02E-04
23	GO:0008381: mechanically-gated ion channel activity	8.88E-04
24	GO:0009922: fatty acid elongase activity	8.88E-04
25	GO:0018685: alkane 1-monooxygenase activity	8.88E-04
26	GO:0004356: glutamate-ammonia ligase activity	8.88E-04
27	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.08E-03
28	GO:0051753: mannan synthase activity	1.29E-03
29	GO:0004017: adenylate kinase activity	1.29E-03
30	GO:0016621: cinnamoyl-CoA reductase activity	1.51E-03
31	GO:0019899: enzyme binding	1.51E-03
32	GO:0003951: NAD+ kinase activity	2.00E-03
33	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.25E-03
34	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.52E-03
35	GO:0004860: protein kinase inhibitor activity	3.09E-03
36	GO:0019888: protein phosphatase regulator activity	3.69E-03
37	GO:0000175: 3'-5'-exoribonuclease activity	3.69E-03
38	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.67E-03
39	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.67E-03
40	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.67E-03
41	GO:0043565: sequence-specific DNA binding	4.88E-03
42	GO:0051087: chaperone binding	5.36E-03
43	GO:0004540: ribonuclease activity	5.72E-03
44	GO:0016760: cellulose synthase (UDP-forming) activity	6.47E-03
45	GO:0015297: antiporter activity	6.56E-03
46	GO:0004672: protein kinase activity	7.24E-03
47	GO:0018024: histone-lysine N-methyltransferase activity	7.25E-03
48	GO:0050662: coenzyme binding	8.47E-03
49	GO:0016759: cellulose synthase activity	1.07E-02
50	GO:0004721: phosphoprotein phosphatase activity	1.36E-02
51	GO:0004674: protein serine/threonine kinase activity	1.45E-02
52	GO:0015238: drug transmembrane transporter activity	1.51E-02
53	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.62E-02
54	GO:0044212: transcription regulatory region DNA binding	1.75E-02
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.84E-02
56	GO:0050661: NADP binding	1.89E-02
57	GO:0043621: protein self-association	2.18E-02
58	GO:0051287: NAD binding	2.37E-02
59	GO:0031625: ubiquitin protein ligase binding	2.75E-02
60	GO:0045330: aspartyl esterase activity	2.75E-02
61	GO:0030599: pectinesterase activity	3.15E-02
62	GO:0005524: ATP binding	3.37E-02
63	GO:0004252: serine-type endopeptidase activity	4.15E-02
64	GO:0030170: pyridoxal phosphate binding	4.15E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.56E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.61E-02
67	GO:0030246: carbohydrate binding	4.65E-02
68	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.83E-02
69	GO:0008017: microtubule binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.28E-04
2	GO:0031225: anchored component of membrane	5.72E-04
3	GO:0000178: exosome (RNase complex)	8.88E-04
4	GO:0009536: plastid	1.28E-03
5	GO:0071013: catalytic step 2 spliceosome	3.09E-03
6	GO:0005743: mitochondrial inner membrane	3.14E-03
7	GO:0009706: chloroplast inner membrane	3.99E-03
8	GO:0005770: late endosome	8.06E-03
9	GO:0046658: anchored component of plasma membrane	9.11E-03
10	GO:0005694: chromosome	9.78E-03
11	GO:0005778: peroxisomal membrane	1.11E-02
12	GO:0000932: P-body	1.21E-02
13	GO:0031902: late endosome membrane	1.95E-02
14	GO:0009505: plant-type cell wall	2.32E-02
15	GO:0010008: endosome membrane	2.94E-02
16	GO:0009941: chloroplast envelope	4.09E-02