co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:1990258: histone glutamine methylation	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
9	GO:0043461: proton-transporting ATP synthase complex assembly	0.00E+00
10	GO:0006412: translation	9.96E-147
11	GO:0042254: ribosome biogenesis	1.86E-47
12	GO:0000027: ribosomal large subunit assembly	2.89E-13
13	GO:0006626: protein targeting to mitochondrion	5.15E-07
14	GO:0000028: ribosomal small subunit assembly	1.20E-06
15	GO:0006820: anion transport	1.30E-05
16	GO:0009735: response to cytokinin	2.28E-05
17	GO:0009955: adaxial/abaxial pattern specification	2.39E-05
18	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.70E-05
19	GO:0030150: protein import into mitochondrial matrix	4.45E-05
20	GO:0002181: cytoplasmic translation	6.10E-05
21	GO:1902626: assembly of large subunit precursor of preribosome	6.10E-05
22	GO:0042274: ribosomal small subunit biogenesis	2.17E-04
23	GO:0031167: rRNA methylation	3.26E-04
24	GO:0006364: rRNA processing	4.51E-04
25	GO:0006413: translational initiation	4.73E-04
26	GO:0006414: translational elongation	4.99E-04
27	GO:0046686: response to cadmium ion	6.30E-04
28	GO:0090449: phloem glucosinolate loading	6.58E-04
29	GO:0006475: internal protein amino acid acetylation	6.58E-04
30	GO:0015801: aromatic amino acid transport	6.58E-04
31	GO:0017198: N-terminal peptidyl-serine acetylation	6.58E-04
32	GO:0030490: maturation of SSU-rRNA	6.58E-04
33	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.58E-04
34	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.58E-04
35	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	6.58E-04
36	GO:1901349: glucosinolate transport	6.58E-04
37	GO:0006407: rRNA export from nucleus	6.58E-04
38	GO:0001510: RNA methylation	1.16E-03
39	GO:0098656: anion transmembrane transport	1.39E-03
40	GO:0045905: positive regulation of translational termination	1.42E-03
41	GO:0045901: positive regulation of translational elongation	1.42E-03
42	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.42E-03
43	GO:0048569: post-embryonic animal organ development	1.42E-03
44	GO:0006452: translational frameshifting	1.42E-03
45	GO:0009967: positive regulation of signal transduction	1.42E-03
46	GO:0015786: UDP-glucose transport	1.42E-03
47	GO:0000387: spliceosomal snRNP assembly	1.65E-03
48	GO:0008333: endosome to lysosome transport	2.34E-03
49	GO:0009150: purine ribonucleotide metabolic process	2.34E-03
50	GO:0045793: positive regulation of cell size	2.34E-03
51	GO:0015783: GDP-fucose transport	2.34E-03
52	GO:0034227: tRNA thio-modification	2.34E-03
53	GO:0042256: mature ribosome assembly	2.34E-03
54	GO:0045039: protein import into mitochondrial inner membrane	2.34E-03
55	GO:0032940: secretion by cell	2.34E-03
56	GO:0009651: response to salt stress	3.06E-03
57	GO:0006446: regulation of translational initiation	3.30E-03
58	GO:0006165: nucleoside diphosphate phosphorylation	3.40E-03
59	GO:0032981: mitochondrial respiratory chain complex I assembly	3.40E-03
60	GO:0006228: UTP biosynthetic process	3.40E-03
61	GO:0006164: purine nucleotide biosynthetic process	3.40E-03
62	GO:0006168: adenine salvage	3.40E-03
63	GO:0071786: endoplasmic reticulum tubular network organization	3.40E-03
64	GO:0001676: long-chain fatty acid metabolic process	3.40E-03
65	GO:0046513: ceramide biosynthetic process	3.40E-03
66	GO:0032877: positive regulation of DNA endoreduplication	3.40E-03
67	GO:0033617: mitochondrial respiratory chain complex IV assembly	3.40E-03
68	GO:0006166: purine ribonucleoside salvage	3.40E-03
69	GO:0070301: cellular response to hydrogen peroxide	3.40E-03
70	GO:0006241: CTP biosynthetic process	3.40E-03
71	GO:0072334: UDP-galactose transmembrane transport	3.40E-03
72	GO:0051205: protein insertion into membrane	4.58E-03
73	GO:0006487: protein N-linked glycosylation	4.58E-03
74	GO:0051781: positive regulation of cell division	4.58E-03
75	GO:0006183: GTP biosynthetic process	4.58E-03
76	GO:0010363: regulation of plant-type hypersensitive response	4.58E-03
77	GO:0015992: proton transport	5.57E-03
78	GO:0048511: rhythmic process	5.57E-03
79	GO:0018279: protein N-linked glycosylation via asparagine	5.89E-03
80	GO:0006461: protein complex assembly	5.89E-03
81	GO:1902183: regulation of shoot apical meristem development	5.89E-03
82	GO:0044209: AMP salvage	5.89E-03
83	GO:0045116: protein neddylation	5.89E-03
84	GO:0071493: cellular response to UV-B	5.89E-03
85	GO:0019408: dolichol biosynthetic process	5.89E-03
86	GO:0040007: growth	6.67E-03
87	GO:0008283: cell proliferation	7.28E-03
88	GO:0000741: karyogamy	7.31E-03
89	GO:0001731: formation of translation preinitiation complex	7.31E-03
90	GO:0000470: maturation of LSU-rRNA	7.31E-03
91	GO:0045040: protein import into mitochondrial outer membrane	7.31E-03
92	GO:0042147: retrograde transport, endosome to Golgi	7.88E-03
93	GO:0008033: tRNA processing	8.53E-03
94	GO:0000413: protein peptidyl-prolyl isomerization	8.53E-03
95	GO:0000054: ribosomal subunit export from nucleus	8.84E-03
96	GO:0000245: spliceosomal complex assembly	8.84E-03
97	GO:0009554: megasporogenesis	8.84E-03
98	GO:0009648: photoperiodism	8.84E-03
99	GO:1901001: negative regulation of response to salt stress	8.84E-03
100	GO:0009612: response to mechanical stimulus	8.84E-03
101	GO:0009645: response to low light intensity stimulus	1.05E-02
102	GO:1900056: negative regulation of leaf senescence	1.05E-02
103	GO:0051603: proteolysis involved in cellular protein catabolic process	1.12E-02
104	GO:0009793: embryo development ending in seed dormancy	1.16E-02
105	GO:0009690: cytokinin metabolic process	1.22E-02
106	GO:0050821: protein stabilization	1.22E-02
107	GO:0006102: isocitrate metabolic process	1.22E-02
108	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.22E-02
109	GO:0010204: defense response signaling pathway, resistance gene-independent	1.41E-02
110	GO:0030968: endoplasmic reticulum unfolded protein response	1.41E-02
111	GO:0001558: regulation of cell growth	1.41E-02
112	GO:0006189: 'de novo' IMP biosynthetic process	1.60E-02
113	GO:0009060: aerobic respiration	1.60E-02
114	GO:0015780: nucleotide-sugar transport	1.60E-02
115	GO:0007338: single fertilization	1.60E-02
116	GO:0009245: lipid A biosynthetic process	1.60E-02
117	GO:0006098: pentose-phosphate shunt	1.60E-02
118	GO:0042761: very long-chain fatty acid biosynthetic process	1.80E-02
119	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.01E-02
120	GO:0043069: negative regulation of programmed cell death	2.01E-02
121	GO:0000398: mRNA splicing, via spliceosome	2.01E-02
122	GO:0015770: sucrose transport	2.23E-02
123	GO:0010015: root morphogenesis	2.23E-02
124	GO:0006913: nucleocytoplasmic transport	2.23E-02
125	GO:0006811: ion transport	2.39E-02
126	GO:0006511: ubiquitin-dependent protein catabolic process	2.40E-02
127	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	2.46E-02
128	GO:0008361: regulation of cell size	2.46E-02
129	GO:0006790: sulfur compound metabolic process	2.46E-02
130	GO:0010043: response to zinc ion	2.51E-02
131	GO:0042744: hydrogen peroxide catabolic process	2.62E-02
132	GO:0010102: lateral root morphogenesis	2.69E-02
133	GO:0006094: gluconeogenesis	2.69E-02
134	GO:0006099: tricarboxylic acid cycle	2.88E-02
135	GO:0048467: gynoecium development	2.93E-02
136	GO:0002237: response to molecule of bacterial origin	2.93E-02
137	GO:0007034: vacuolar transport	2.93E-02
138	GO:0090351: seedling development	3.18E-02
139	GO:0010167: response to nitrate	3.18E-02
140	GO:0006289: nucleotide-excision repair	3.70E-02
141	GO:0009116: nucleoside metabolic process	3.70E-02
142	GO:0008643: carbohydrate transport	3.83E-02
143	GO:0009644: response to high light intensity	3.83E-02
144	GO:0009409: response to cold	3.86E-02
145	GO:0051302: regulation of cell division	3.97E-02
146	GO:0009965: leaf morphogenesis	3.98E-02
147	GO:0009617: response to bacterium	4.15E-02
148	GO:0003333: amino acid transmembrane transport	4.25E-02
149	GO:0051260: protein homooligomerization	4.25E-02
150	GO:0010431: seed maturation	4.25E-02
151	GO:0061077: chaperone-mediated protein folding	4.25E-02
152	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.29E-02
153	GO:0007005: mitochondrion organization	4.53E-02
154	GO:0071215: cellular response to abscisic acid stimulus	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
3	GO:0008752: FMN reductase activity	0.00E+00
4	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
5	GO:0016881: acid-amino acid ligase activity	0.00E+00
6	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
7	GO:0003735: structural constituent of ribosome	3.53E-179
8	GO:0003729: mRNA binding	1.78E-36
9	GO:0019843: rRNA binding	1.64E-14
10	GO:0003746: translation elongation factor activity	1.09E-06
11	GO:0015288: porin activity	1.20E-06
12	GO:0008308: voltage-gated anion channel activity	2.00E-06
13	GO:0008649: rRNA methyltransferase activity	6.10E-05
14	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.22E-05
15	GO:0008097: 5S rRNA binding	1.27E-04
16	GO:0001055: RNA polymerase II activity	1.30E-04
17	GO:0001054: RNA polymerase I activity	2.04E-04
18	GO:0001056: RNA polymerase III activity	2.48E-04
19	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.26E-04
20	GO:0003723: RNA binding	3.38E-04
21	GO:1990190: peptide-glutamate-N-acetyltransferase activity	6.58E-04
22	GO:0005080: protein kinase C binding	6.58E-04
23	GO:0090448: glucosinolate:proton symporter activity	6.58E-04
24	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	6.58E-04
25	GO:0000824: inositol tetrakisphosphate 3-kinase activity	6.58E-04
26	GO:1990189: peptide-serine-N-acetyltransferase activity	6.58E-04
27	GO:0047326: inositol tetrakisphosphate 5-kinase activity	6.58E-04
28	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	6.58E-04
29	GO:0004298: threonine-type endopeptidase activity	6.98E-04
30	GO:0003743: translation initiation factor activity	7.49E-04
31	GO:0030515: snoRNA binding	7.71E-04
32	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.71E-04
33	GO:0043022: ribosome binding	9.57E-04
34	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.42E-03
35	GO:0005078: MAP-kinase scaffold activity	1.42E-03
36	GO:0008517: folic acid transporter activity	1.42E-03
37	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.42E-03
38	GO:0050291: sphingosine N-acyltransferase activity	1.42E-03
39	GO:0004618: phosphoglycerate kinase activity	1.42E-03
40	GO:0019781: NEDD8 activating enzyme activity	1.42E-03
41	GO:0015173: aromatic amino acid transmembrane transporter activity	1.42E-03
42	GO:0004750: ribulose-phosphate 3-epimerase activity	1.42E-03
43	GO:0008805: carbon-monoxide oxygenase activity	1.42E-03
44	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.23E-03
45	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.34E-03
46	GO:0005457: GDP-fucose transmembrane transporter activity	2.34E-03
47	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.34E-03
48	GO:0015266: protein channel activity	2.92E-03
49	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.40E-03
50	GO:0005460: UDP-glucose transmembrane transporter activity	3.40E-03
51	GO:0004550: nucleoside diphosphate kinase activity	3.40E-03
52	GO:0047627: adenylylsulfatase activity	3.40E-03
53	GO:0003999: adenine phosphoribosyltransferase activity	3.40E-03
54	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.58E-03
55	GO:0004576: oligosaccharyl transferase activity	4.58E-03
56	GO:0016004: phospholipase activator activity	4.58E-03
57	GO:0010011: auxin binding	4.58E-03
58	GO:0070628: proteasome binding	4.58E-03
59	GO:0005275: amine transmembrane transporter activity	5.89E-03
60	GO:0005496: steroid binding	5.89E-03
61	GO:0005459: UDP-galactose transmembrane transporter activity	5.89E-03
62	GO:0008641: small protein activating enzyme activity	5.89E-03
63	GO:0045547: dehydrodolichyl diphosphate synthase activity	5.89E-03
64	GO:0008233: peptidase activity	6.86E-03
65	GO:0008514: organic anion transmembrane transporter activity	7.26E-03
66	GO:0004332: fructose-bisphosphate aldolase activity	7.31E-03
67	GO:0031593: polyubiquitin binding	7.31E-03
68	GO:0031177: phosphopantetheine binding	7.31E-03
69	GO:0000035: acyl binding	8.84E-03
70	GO:0102391: decanoate--CoA ligase activity	8.84E-03
71	GO:0004656: procollagen-proline 4-dioxygenase activity	8.84E-03
72	GO:0051920: peroxiredoxin activity	8.84E-03
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.87E-03
74	GO:0004467: long-chain fatty acid-CoA ligase activity	1.05E-02
75	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.05E-02
76	GO:0008235: metalloexopeptidase activity	1.05E-02
77	GO:0016209: antioxidant activity	1.22E-02
78	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.22E-02
79	GO:0008135: translation factor activity, RNA binding	1.41E-02
80	GO:0000989: transcription factor activity, transcription factor binding	1.60E-02
81	GO:0004601: peroxidase activity	1.72E-02
82	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.23E-02
83	GO:0008794: arsenate reductase (glutaredoxin) activity	2.23E-02
84	GO:0008559: xenobiotic-transporting ATPase activity	2.23E-02
85	GO:0044183: protein binding involved in protein folding	2.23E-02
86	GO:0008515: sucrose transmembrane transporter activity	2.23E-02
87	GO:0051119: sugar transmembrane transporter activity	3.18E-02
88	GO:0005525: GTP binding	3.43E-02
89	GO:0000166: nucleotide binding	3.68E-02
90	GO:0031418: L-ascorbic acid binding	3.70E-02
91	GO:0043130: ubiquitin binding	3.70E-02
92	GO:0005528: FK506 binding	3.70E-02
93	GO:0051087: chaperone binding	3.97E-02
94	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005840: ribosome	2.90E-121
3	GO:0022626: cytosolic ribosome	1.62E-118
4	GO:0022625: cytosolic large ribosomal subunit	7.83E-115
5	GO:0022627: cytosolic small ribosomal subunit	8.75E-74
6	GO:0005730: nucleolus	1.83E-41
7	GO:0005829: cytosol	3.39E-39
8	GO:0005737: cytoplasm	8.28E-35
9	GO:0009506: plasmodesma	1.39E-34
10	GO:0005774: vacuolar membrane	1.24E-25
11	GO:0015934: large ribosomal subunit	2.99E-22
12	GO:0016020: membrane	1.75E-17
13	GO:0005773: vacuole	4.49E-16
14	GO:0015935: small ribosomal subunit	5.11E-11
15	GO:0005618: cell wall	3.72E-09
16	GO:0005886: plasma membrane	1.82E-07
17	GO:0046930: pore complex	2.00E-06
18	GO:0009507: chloroplast	6.21E-06
19	GO:0005665: DNA-directed RNA polymerase II, core complex	1.30E-05
20	GO:0005741: mitochondrial outer membrane	6.56E-05
21	GO:0005736: DNA-directed RNA polymerase I complex	1.00E-04
22	GO:0005666: DNA-directed RNA polymerase III complex	1.30E-04
23	GO:0015030: Cajal body	1.30E-04
24	GO:0000418: DNA-directed RNA polymerase IV complex	1.65E-04
25	GO:0019013: viral nucleocapsid	2.97E-04
26	GO:0008250: oligosaccharyltransferase complex	3.26E-04
27	GO:0000502: proteasome complex	4.51E-04
28	GO:0031428: box C/D snoRNP complex	4.56E-04
29	GO:0000419: DNA-directed RNA polymerase V complex	4.74E-04
30	GO:0005758: mitochondrial intermembrane space	5.43E-04
31	GO:0009510: plasmodesmatal desmotubule	6.58E-04
32	GO:0030686: 90S preribosome	6.58E-04
33	GO:0005839: proteasome core complex	6.98E-04
34	GO:0005783: endoplasmic reticulum	9.48E-04
35	GO:0005732: small nucleolar ribonucleoprotein complex	9.91E-04
36	GO:0005742: mitochondrial outer membrane translocase complex	1.16E-03
37	GO:0031415: NatA complex	1.42E-03
38	GO:0071011: precatalytic spliceosome	1.65E-03
39	GO:0071013: catalytic step 2 spliceosome	2.24E-03
40	GO:0034719: SMN-Sm protein complex	2.34E-03
41	GO:0005853: eukaryotic translation elongation factor 1 complex	2.34E-03
42	GO:0046861: glyoxysomal membrane	2.34E-03
43	GO:0032040: small-subunit processome	2.56E-03
44	GO:0005788: endoplasmic reticulum lumen	2.96E-03
45	GO:0005750: mitochondrial respiratory chain complex III	3.30E-03
46	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.40E-03
47	GO:0071782: endoplasmic reticulum tubular network	3.40E-03
48	GO:0005794: Golgi apparatus	3.64E-03
49	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.58E-03
50	GO:0005682: U5 snRNP	4.58E-03
51	GO:0070469: respiratory chain	5.06E-03
52	GO:0005687: U4 snRNP	5.89E-03
53	GO:0097526: spliceosomal tri-snRNP complex	5.89E-03
54	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.26E-03
55	GO:0005851: eukaryotic translation initiation factor 2B complex	7.31E-03
56	GO:0000974: Prp19 complex	7.31E-03
57	GO:0005771: multivesicular body	7.31E-03
58	GO:0030904: retromer complex	7.31E-03
59	GO:0016282: eukaryotic 43S preinitiation complex	7.31E-03
60	GO:0033290: eukaryotic 48S preinitiation complex	8.84E-03
61	GO:0005689: U12-type spliceosomal complex	8.84E-03
62	GO:0016272: prefoldin complex	8.84E-03
63	GO:0071004: U2-type prespliceosome	1.22E-02
64	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.22E-02
65	GO:0005743: mitochondrial inner membrane	1.23E-02
66	GO:0005681: spliceosomal complex	1.32E-02
67	GO:0009514: glyoxysome	1.41E-02
68	GO:0005622: intracellular	1.59E-02
69	GO:0005685: U1 snRNP	1.60E-02
70	GO:0030529: intracellular ribonucleoprotein complex	1.66E-02
71	GO:0005686: U2 snRNP	2.01E-02
72	GO:0005740: mitochondrial envelope	2.01E-02
73	GO:0005852: eukaryotic translation initiation factor 3 complex	2.23E-02
74	GO:0031307: integral component of mitochondrial outer membrane	2.46E-02
75	GO:0005759: mitochondrial matrix	2.97E-02
76	GO:0045271: respiratory chain complex I	3.97E-02