co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0048870: cell motility	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0051776: detection of redox state	0.00E+00
5	GO:0071284: cellular response to lead ion	0.00E+00
6	GO:0046292: formaldehyde metabolic process	0.00E+00
7	GO:0006069: ethanol oxidation	0.00E+00
8	GO:0046085: adenosine metabolic process	0.00E+00
9	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	6.24E-08
10	GO:0009853: photorespiration	2.94E-05
11	GO:0045454: cell redox homeostasis	1.37E-04
12	GO:0016226: iron-sulfur cluster assembly	2.98E-04
13	GO:2001006: regulation of cellulose biosynthetic process	3.99E-04
14	GO:0009240: isopentenyl diphosphate biosynthetic process	3.99E-04
15	GO:2000025: regulation of leaf formation	3.99E-04
16	GO:0031468: nuclear envelope reassembly	3.99E-04
17	GO:0045901: positive regulation of translational elongation	8.66E-04
18	GO:0006452: translational frameshifting	8.66E-04
19	GO:0007163: establishment or maintenance of cell polarity	8.66E-04
20	GO:0006432: phenylalanyl-tRNA aminoacylation	8.66E-04
21	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.66E-04
22	GO:0080026: response to indolebutyric acid	8.66E-04
23	GO:0051252: regulation of RNA metabolic process	8.66E-04
24	GO:0045905: positive regulation of translational termination	8.66E-04
25	GO:0071668: plant-type cell wall assembly	8.66E-04
26	GO:0019441: tryptophan catabolic process to kynurenine	8.66E-04
27	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	8.66E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.66E-04
29	GO:0006325: chromatin organization	9.28E-04
30	GO:0016569: covalent chromatin modification	1.10E-03
31	GO:0055114: oxidation-reduction process	1.18E-03
32	GO:0090708: specification of plant organ axis polarity	1.40E-03
33	GO:0032786: positive regulation of DNA-templated transcription, elongation	1.40E-03
34	GO:0008333: endosome to lysosome transport	1.40E-03
35	GO:0046417: chorismate metabolic process	1.40E-03
36	GO:0015940: pantothenate biosynthetic process	1.40E-03
37	GO:0045793: positive regulation of cell size	1.40E-03
38	GO:0006760: folic acid-containing compound metabolic process	1.40E-03
39	GO:0048527: lateral root development	1.78E-03
40	GO:0032877: positive regulation of DNA endoreduplication	2.03E-03
41	GO:0006107: oxaloacetate metabolic process	2.03E-03
42	GO:0009113: purine nucleobase biosynthetic process	2.03E-03
43	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.03E-03
44	GO:0035067: negative regulation of histone acetylation	2.03E-03
45	GO:0009399: nitrogen fixation	2.03E-03
46	GO:1901332: negative regulation of lateral root development	2.03E-03
47	GO:0006164: purine nucleotide biosynthetic process	2.03E-03
48	GO:0006516: glycoprotein catabolic process	2.03E-03
49	GO:0080024: indolebutyric acid metabolic process	2.03E-03
50	GO:0006487: protein N-linked glycosylation	2.16E-03
51	GO:0006406: mRNA export from nucleus	2.16E-03
52	GO:0006542: glutamine biosynthetic process	2.73E-03
53	GO:0010109: regulation of photosynthesis	2.73E-03
54	GO:0051781: positive regulation of cell division	2.73E-03
55	GO:0010387: COP9 signalosome assembly	2.73E-03
56	GO:0071249: cellular response to nitrate	2.73E-03
57	GO:0002098: tRNA wobble uridine modification	2.73E-03
58	GO:0031507: heterochromatin assembly	2.73E-03
59	GO:0006749: glutathione metabolic process	2.73E-03
60	GO:0032366: intracellular sterol transport	2.73E-03
61	GO:0006012: galactose metabolic process	3.13E-03
62	GO:0018344: protein geranylgeranylation	3.49E-03
63	GO:0030041: actin filament polymerization	3.49E-03
64	GO:0015991: ATP hydrolysis coupled proton transport	3.99E-03
65	GO:0006662: glycerol ether metabolic process	4.30E-03
66	GO:0006555: methionine metabolic process	4.32E-03
67	GO:0043248: proteasome assembly	4.32E-03
68	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	4.32E-03
69	GO:0007035: vacuolar acidification	4.32E-03
70	GO:0009117: nucleotide metabolic process	4.32E-03
71	GO:0006574: valine catabolic process	4.32E-03
72	GO:0019509: L-methionine salvage from methylthioadenosine	5.20E-03
73	GO:0010090: trichome morphogenesis	6.05E-03
74	GO:0032880: regulation of protein localization	6.15E-03
75	GO:0007050: cell cycle arrest	6.15E-03
76	GO:0000338: protein deneddylation	6.15E-03
77	GO:0000082: G1/S transition of mitotic cell cycle	6.15E-03
78	GO:0006914: autophagy	6.44E-03
79	GO:0010286: heat acclimation	6.84E-03
80	GO:0010928: regulation of auxin mediated signaling pathway	7.15E-03
81	GO:0035265: organ growth	7.15E-03
82	GO:0006506: GPI anchor biosynthetic process	7.15E-03
83	GO:0000028: ribosomal small subunit assembly	7.15E-03
84	GO:0045010: actin nucleation	7.15E-03
85	GO:0009808: lignin metabolic process	8.21E-03
86	GO:0001510: RNA methylation	8.21E-03
87	GO:0000902: cell morphogenesis	9.31E-03
88	GO:0046685: response to arsenic-containing substance	9.31E-03
89	GO:0009245: lipid A biosynthetic process	9.31E-03
90	GO:0006754: ATP biosynthetic process	9.31E-03
91	GO:0006189: 'de novo' IMP biosynthetic process	9.31E-03
92	GO:0048589: developmental growth	9.31E-03
93	GO:0000387: spliceosomal snRNP assembly	1.05E-02
94	GO:0010267: production of ta-siRNAs involved in RNA interference	1.05E-02
95	GO:0046686: response to cadmium ion	1.06E-02
96	GO:0010311: lateral root formation	1.06E-02
97	GO:0045036: protein targeting to chloroplast	1.17E-02
98	GO:0000103: sulfate assimilation	1.17E-02
99	GO:0043069: negative regulation of programmed cell death	1.17E-02
100	GO:0030148: sphingolipid biosynthetic process	1.29E-02
101	GO:0006378: mRNA polyadenylation	1.29E-02
102	GO:0010015: root morphogenesis	1.29E-02
103	GO:0010072: primary shoot apical meristem specification	1.29E-02
104	GO:0006913: nucleocytoplasmic transport	1.29E-02
105	GO:0072593: reactive oxygen species metabolic process	1.29E-02
106	GO:0009073: aromatic amino acid family biosynthetic process	1.29E-02
107	GO:0016485: protein processing	1.29E-02
108	GO:0006099: tricarboxylic acid cycle	1.34E-02
109	GO:0034599: cellular response to oxidative stress	1.34E-02
110	GO:0010152: pollen maturation	1.43E-02
111	GO:0016925: protein sumoylation	1.43E-02
112	GO:0010102: lateral root morphogenesis	1.56E-02
113	GO:0006807: nitrogen compound metabolic process	1.56E-02
114	GO:0009691: cytokinin biosynthetic process	1.56E-02
115	GO:0006108: malate metabolic process	1.56E-02
116	GO:2000028: regulation of photoperiodism, flowering	1.56E-02
117	GO:0009926: auxin polar transport	1.65E-02
118	GO:0002237: response to molecule of bacterial origin	1.70E-02
119	GO:0010020: chloroplast fission	1.70E-02
120	GO:0006511: ubiquitin-dependent protein catabolic process	1.71E-02
121	GO:0007030: Golgi organization	1.84E-02
122	GO:0010039: response to iron ion	1.84E-02
123	GO:0006071: glycerol metabolic process	1.99E-02
124	GO:0034976: response to endoplasmic reticulum stress	1.99E-02
125	GO:0006289: nucleotide-excision repair	2.14E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	2.14E-02
127	GO:0051302: regulation of cell division	2.30E-02
128	GO:0008299: isoprenoid biosynthetic process	2.30E-02
129	GO:0051603: proteolysis involved in cellular protein catabolic process	2.31E-02
130	GO:0015992: proton transport	2.46E-02
131	GO:0010431: seed maturation	2.46E-02
132	GO:0061077: chaperone-mediated protein folding	2.46E-02
133	GO:0009294: DNA mediated transformation	2.79E-02
134	GO:0010089: xylem development	2.96E-02
135	GO:0048443: stamen development	2.96E-02
136	GO:0019722: calcium-mediated signaling	2.96E-02
137	GO:0016192: vesicle-mediated transport	3.10E-02
138	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.14E-02
139	GO:0042147: retrograde transport, endosome to Golgi	3.14E-02
140	GO:0006606: protein import into nucleus	3.32E-02
141	GO:0080022: primary root development	3.32E-02
142	GO:0034220: ion transmembrane transport	3.32E-02
143	GO:0000413: protein peptidyl-prolyl isomerization	3.32E-02
144	GO:0051726: regulation of cell cycle	3.37E-02
145	GO:0006342: chromatin silencing	3.50E-02
146	GO:0000398: mRNA splicing, via spliceosome	3.66E-02
147	GO:0061025: membrane fusion	3.69E-02
148	GO:0015986: ATP synthesis coupled proton transport	3.69E-02
149	GO:0006886: intracellular protein transport	3.78E-02
150	GO:0009791: post-embryonic development	3.87E-02
151	GO:0080156: mitochondrial mRNA modification	4.07E-02
152	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.07E-02
153	GO:0009630: gravitropism	4.26E-02
154	GO:0031047: gene silencing by RNA	4.26E-02
155	GO:0015031: protein transport	4.94E-02
156	GO:0006397: mRNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
4	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
5	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.20E-06
6	GO:0004298: threonine-type endopeptidase activity	1.49E-05
7	GO:0035064: methylated histone binding	1.61E-05
8	GO:0004129: cytochrome-c oxidase activity	6.83E-05
9	GO:0008794: arsenate reductase (glutaredoxin) activity	6.83E-05
10	GO:0010011: auxin binding	9.53E-05
11	GO:0004576: oligosaccharyl transferase activity	9.53E-05
12	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.48E-04
13	GO:0015035: protein disulfide oxidoreductase activity	2.24E-04
14	GO:0004560: alpha-L-fucosidase activity	3.99E-04
15	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.99E-04
16	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	3.99E-04
17	GO:0047560: 3-dehydrosphinganine reductase activity	3.99E-04
18	GO:0019707: protein-cysteine S-acyltransferase activity	3.99E-04
19	GO:0030611: arsenate reductase activity	3.99E-04
20	GO:0030941: chloroplast targeting sequence binding	3.99E-04
21	GO:0004034: aldose 1-epimerase activity	4.62E-04
22	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.87E-04
23	GO:0047617: acyl-CoA hydrolase activity	7.98E-04
24	GO:0008428: ribonuclease inhibitor activity	8.66E-04
25	GO:1990585: hydroxyproline O-arabinosyltransferase activity	8.66E-04
26	GO:0004106: chorismate mutase activity	8.66E-04
27	GO:0004061: arylformamidase activity	8.66E-04
28	GO:0004826: phenylalanine-tRNA ligase activity	8.66E-04
29	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.66E-04
30	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	8.66E-04
31	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.40E-03
32	GO:0052692: raffinose alpha-galactosidase activity	1.40E-03
33	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.40E-03
34	GO:0008430: selenium binding	1.40E-03
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.40E-03
36	GO:0005047: signal recognition particle binding	1.40E-03
37	GO:0032403: protein complex binding	1.40E-03
38	GO:0004557: alpha-galactosidase activity	1.40E-03
39	GO:0008649: rRNA methyltransferase activity	1.40E-03
40	GO:0004663: Rab geranylgeranyltransferase activity	1.40E-03
41	GO:0003746: translation elongation factor activity	2.00E-03
42	GO:0000254: C-4 methylsterol oxidase activity	2.03E-03
43	GO:0035529: NADH pyrophosphatase activity	2.03E-03
44	GO:0016656: monodehydroascorbate reductase (NADH) activity	2.03E-03
45	GO:0051536: iron-sulfur cluster binding	2.16E-03
46	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.73E-03
47	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.73E-03
48	GO:0000993: RNA polymerase II core binding	2.73E-03
49	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.73E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.37E-03
51	GO:0004356: glutamate-ammonia ligase activity	3.49E-03
52	GO:0008948: oxaloacetate decarboxylase activity	3.49E-03
53	GO:0005496: steroid binding	3.49E-03
54	GO:0031386: protein tag	3.49E-03
55	GO:0047134: protein-disulfide reductase activity	3.69E-03
56	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.30E-03
57	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	4.32E-03
58	GO:0031177: phosphopantetheine binding	4.32E-03
59	GO:0051117: ATPase binding	4.32E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	4.62E-03
61	GO:0004872: receptor activity	4.96E-03
62	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.20E-03
63	GO:0000035: acyl binding	5.20E-03
64	GO:0008235: metalloexopeptidase activity	6.15E-03
65	GO:0042162: telomeric DNA binding	6.15E-03
66	GO:0008143: poly(A) binding	6.15E-03
67	GO:0008320: protein transmembrane transporter activity	6.15E-03
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.15E-03
69	GO:0043022: ribosome binding	7.15E-03
70	GO:0008233: peptidase activity	7.34E-03
71	GO:0015078: hydrogen ion transmembrane transporter activity	8.21E-03
72	GO:0008173: RNA methyltransferase activity	8.21E-03
73	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.31E-03
74	GO:0001055: RNA polymerase II activity	1.05E-02
75	GO:0045309: protein phosphorylated amino acid binding	1.05E-02
76	GO:0005515: protein binding	1.13E-02
77	GO:0008047: enzyme activator activity	1.17E-02
78	GO:0050897: cobalt ion binding	1.17E-02
79	GO:0004864: protein phosphatase inhibitor activity	1.17E-02
80	GO:0003697: single-stranded DNA binding	1.28E-02
81	GO:0004177: aminopeptidase activity	1.29E-02
82	GO:0019904: protein domain specific binding	1.29E-02
83	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.29E-02
84	GO:0008327: methyl-CpG binding	1.29E-02
85	GO:0001054: RNA polymerase I activity	1.29E-02
86	GO:0001056: RNA polymerase III activity	1.43E-02
87	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.43E-02
88	GO:0000049: tRNA binding	1.43E-02
89	GO:0051539: 4 iron, 4 sulfur cluster binding	1.46E-02
90	GO:0004089: carbonate dehydratase activity	1.56E-02
91	GO:0004022: alcohol dehydrogenase (NAD) activity	1.56E-02
92	GO:0051537: 2 iron, 2 sulfur cluster binding	1.79E-02
93	GO:0043621: protein self-association	1.79E-02
94	GO:0004725: protein tyrosine phosphatase activity	1.99E-02
95	GO:0043130: ubiquitin binding	2.14E-02
96	GO:0005528: FK506 binding	2.14E-02
97	GO:0003714: transcription corepressor activity	2.14E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	2.28E-02
99	GO:0043424: protein histidine kinase binding	2.30E-02
100	GO:0046872: metal ion binding	2.74E-02
101	GO:0003727: single-stranded RNA binding	2.96E-02
102	GO:0003756: protein disulfide isomerase activity	2.96E-02
103	GO:0022857: transmembrane transporter activity	2.99E-02
104	GO:0004402: histone acetyltransferase activity	3.32E-02
105	GO:0008536: Ran GTPase binding	3.50E-02
106	GO:0008080: N-acetyltransferase activity	3.50E-02
107	GO:0016853: isomerase activity	3.69E-02
108	GO:0003735: structural constituent of ribosome	4.35E-02
109	GO:0008565: protein transporter activity	4.74E-02
110	GO:0016787: hydrolase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005675: holo TFIIH complex	0.00E+00
2	GO:0097361: CIA complex	0.00E+00
3	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
4	GO:0005747: mitochondrial respiratory chain complex I	4.67E-12
5	GO:0005829: cytosol	2.32E-07
6	GO:0045271: respiratory chain complex I	3.40E-07
7	GO:0005773: vacuole	3.87E-06
8	GO:0000502: proteasome complex	9.26E-06
9	GO:0005839: proteasome core complex	1.49E-05
10	GO:0031966: mitochondrial membrane	8.77E-05
11	GO:0008250: oligosaccharyltransferase complex	1.48E-04
12	GO:0005732: small nucleolar ribonucleoprotein complex	2.51E-04
13	GO:0032044: DSIF complex	3.99E-04
14	GO:0045273: respiratory chain complex II	4.62E-04
15	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.62E-04
16	GO:0000421: autophagosome membrane	4.62E-04
17	GO:0019773: proteasome core complex, alpha-subunit complex	5.64E-04
18	GO:0005774: vacuolar membrane	6.93E-04
19	GO:0005739: mitochondrion	8.53E-04
20	GO:0005697: telomerase holoenzyme complex	8.66E-04
21	GO:0005783: endoplasmic reticulum	1.18E-03
22	GO:0000439: core TFIIH complex	1.40E-03
23	GO:0005838: proteasome regulatory particle	1.40E-03
24	GO:0005853: eukaryotic translation elongation factor 1 complex	1.40E-03
25	GO:0005968: Rab-protein geranylgeranyltransferase complex	2.03E-03
26	GO:0033588: Elongator holoenzyme complex	2.03E-03
27	GO:0005849: mRNA cleavage factor complex	2.03E-03
28	GO:0005719: nuclear euchromatin	2.03E-03
29	GO:1990726: Lsm1-7-Pat1 complex	2.03E-03
30	GO:0005758: mitochondrial intermembrane space	2.16E-03
31	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.73E-03
32	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.73E-03
33	GO:0000445: THO complex part of transcription export complex	2.73E-03
34	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.73E-03
35	GO:0022626: cytosolic ribosome	2.76E-03
36	GO:0031410: cytoplasmic vesicle	2.87E-03
37	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	3.49E-03
38	GO:0005746: mitochondrial respiratory chain	3.49E-03
39	GO:0005771: multivesicular body	4.32E-03
40	GO:0032588: trans-Golgi network membrane	4.32E-03
41	GO:0030904: retromer complex	4.32E-03
42	GO:0031209: SCAR complex	4.32E-03
43	GO:0005840: ribosome	4.53E-03
44	GO:0005730: nucleolus	4.73E-03
45	GO:0005801: cis-Golgi network	5.20E-03
46	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.15E-03
47	GO:0000347: THO complex	6.15E-03
48	GO:0031359: integral component of chloroplast outer membrane	6.15E-03
49	GO:0005688: U6 snRNP	7.15E-03
50	GO:0005788: endoplasmic reticulum lumen	8.14E-03
51	GO:0046540: U4/U6 x U5 tri-snRNP complex	8.21E-03
52	GO:0005677: chromatin silencing complex	8.21E-03
53	GO:0005737: cytoplasm	8.57E-03
54	GO:0005763: mitochondrial small ribosomal subunit	9.31E-03
55	GO:0005736: DNA-directed RNA polymerase I complex	9.31E-03
56	GO:0008180: COP9 signalosome	9.31E-03
57	GO:0005789: endoplasmic reticulum membrane	1.02E-02
58	GO:0005666: DNA-directed RNA polymerase III complex	1.05E-02
59	GO:0071011: precatalytic spliceosome	1.05E-02
60	GO:0005740: mitochondrial envelope	1.17E-02
61	GO:0008541: proteasome regulatory particle, lid subcomplex	1.29E-02
62	GO:0071013: catalytic step 2 spliceosome	1.29E-02
63	GO:0005794: Golgi apparatus	1.40E-02
64	GO:0005665: DNA-directed RNA polymerase II, core complex	1.43E-02
65	GO:0009508: plastid chromosome	1.56E-02
66	GO:0019013: viral nucleocapsid	1.56E-02
67	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.84E-02
68	GO:0000419: DNA-directed RNA polymerase V complex	1.99E-02
69	GO:0070469: respiratory chain	2.30E-02
70	GO:0005635: nuclear envelope	2.39E-02
71	GO:0005777: peroxisome	3.90E-02
72	GO:0000785: chromatin	4.26E-02
73	GO:0071944: cell periphery	4.46E-02
74	GO:0032580: Golgi cisterna membrane	4.66E-02
75	GO:0009295: nucleoid	4.86E-02
76	GO:0005778: peroxisomal membrane	4.86E-02
77	GO:0005759: mitochondrial matrix	4.97E-02