Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046487: glyoxylate metabolic process0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:0090239: regulation of histone H4 acetylation0.00E+00
5GO:0000740: nuclear membrane fusion0.00E+00
6GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
7GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
8GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
9GO:0006412: translation9.33E-142
10GO:0042254: ribosome biogenesis2.05E-51
11GO:0000027: ribosomal large subunit assembly1.91E-09
12GO:0006626: protein targeting to mitochondrion1.64E-08
13GO:0000028: ribosomal small subunit assembly2.16E-08
14GO:0006511: ubiquitin-dependent protein catabolic process4.69E-08
15GO:0000387: spliceosomal snRNP assembly6.40E-06
16GO:0009955: adaxial/abaxial pattern specification3.01E-05
17GO:0046686: response to cadmium ion4.02E-05
18GO:0009735: response to cytokinin4.12E-05
19GO:0000398: mRNA splicing, via spliceosome5.33E-05
20GO:0002181: cytoplasmic translation7.17E-05
21GO:0006414: translational elongation2.51E-04
22GO:0009165: nucleotide biosynthetic process2.51E-04
23GO:0006820: anion transport3.00E-04
24GO:0009651: response to salt stress4.39E-04
25GO:0043248: proteasome assembly5.23E-04
26GO:0045040: protein import into mitochondrial outer membrane5.23E-04
27GO:0051603: proteolysis involved in cellular protein catabolic process6.20E-04
28GO:0030150: protein import into mitochondrial matrix6.49E-04
29GO:0009116: nucleoside metabolic process6.49E-04
30GO:0000245: spliceosomal complex assembly6.92E-04
31GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.22E-04
32GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.22E-04
33GO:0032365: intracellular lipid transport7.22E-04
34GO:0006407: rRNA export from nucleus7.22E-04
35GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.22E-04
36GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.22E-04
37GO:0006475: internal protein amino acid acetylation7.22E-04
38GO:0015801: aromatic amino acid transport7.22E-04
39GO:1990258: histone glutamine methylation7.22E-04
40GO:0048453: sepal formation7.22E-04
41GO:0017198: N-terminal peptidyl-serine acetylation7.22E-04
42GO:0031060: regulation of histone methylation7.22E-04
43GO:0030490: maturation of SSU-rRNA7.22E-04
44GO:2001006: regulation of cellulose biosynthetic process7.22E-04
45GO:0006434: seryl-tRNA aminoacylation7.22E-04
46GO:0000494: box C/D snoRNA 3'-end processing7.22E-04
47GO:0000413: protein peptidyl-prolyl isomerization1.42E-03
48GO:0009793: embryo development ending in seed dormancy1.46E-03
49GO:0006452: translational frameshifting1.56E-03
50GO:0010198: synergid death1.56E-03
51GO:0009967: positive regulation of signal transduction1.56E-03
52GO:0015786: UDP-glucose transport1.56E-03
53GO:0006432: phenylalanyl-tRNA aminoacylation1.56E-03
54GO:0051788: response to misfolded protein1.56E-03
55GO:0045905: positive regulation of translational termination1.56E-03
56GO:0071668: plant-type cell wall assembly1.56E-03
57GO:0006435: threonyl-tRNA aminoacylation1.56E-03
58GO:0009156: ribonucleoside monophosphate biosynthetic process1.56E-03
59GO:0045901: positive regulation of translational elongation1.56E-03
60GO:0045041: protein import into mitochondrial intermembrane space1.56E-03
61GO:0048569: post-embryonic animal organ development1.56E-03
62GO:0043981: histone H4-K5 acetylation1.56E-03
63GO:0009245: lipid A biosynthetic process1.60E-03
64GO:0098656: anion transmembrane transport1.60E-03
65GO:0008283: cell proliferation1.75E-03
66GO:0010267: production of ta-siRNAs involved in RNA interference1.90E-03
67GO:0010452: histone H3-K36 methylation2.57E-03
68GO:1902626: assembly of large subunit precursor of preribosome2.57E-03
69GO:0046168: glycerol-3-phosphate catabolic process2.57E-03
70GO:0070919: production of siRNA involved in chromatin silencing by small RNA2.57E-03
71GO:0009150: purine ribonucleotide metabolic process2.57E-03
72GO:1904278: positive regulation of wax biosynthetic process2.57E-03
73GO:0045793: positive regulation of cell size2.57E-03
74GO:0015783: GDP-fucose transport2.57E-03
75GO:0034227: tRNA thio-modification2.57E-03
76GO:0060145: viral gene silencing in virus induced gene silencing2.57E-03
77GO:0010476: gibberellin mediated signaling pathway2.57E-03
78GO:0042256: mature ribosome assembly2.57E-03
79GO:0090506: axillary shoot meristem initiation2.57E-03
80GO:0010338: leaf formation2.57E-03
81GO:0046653: tetrahydrofolate metabolic process3.75E-03
82GO:0009647: skotomorphogenesis3.75E-03
83GO:0006241: CTP biosynthetic process3.75E-03
84GO:0072334: UDP-galactose transmembrane transport3.75E-03
85GO:0006072: glycerol-3-phosphate metabolic process3.75E-03
86GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.75E-03
87GO:0006168: adenine salvage3.75E-03
88GO:0006165: nucleoside diphosphate phosphorylation3.75E-03
89GO:0006228: UTP biosynthetic process3.75E-03
90GO:0006164: purine nucleotide biosynthetic process3.75E-03
91GO:0009558: embryo sac cellularization3.75E-03
92GO:0001676: long-chain fatty acid metabolic process3.75E-03
93GO:0046513: ceramide biosynthetic process3.75E-03
94GO:0032877: positive regulation of DNA endoreduplication3.75E-03
95GO:0046836: glycolipid transport3.75E-03
96GO:0006166: purine ribonucleoside salvage3.75E-03
97GO:0070301: cellular response to hydrogen peroxide3.75E-03
98GO:0051085: chaperone mediated protein folding requiring cofactor3.75E-03
99GO:0006446: regulation of translational initiation3.80E-03
100GO:0006183: GTP biosynthetic process5.06E-03
101GO:0010363: regulation of plant-type hypersensitive response5.06E-03
102GO:2000032: regulation of secondary shoot formation5.06E-03
103GO:0051781: positive regulation of cell division5.06E-03
104GO:0042274: ribosomal small subunit biogenesis5.06E-03
105GO:0010387: COP9 signalosome assembly5.06E-03
106GO:0006406: mRNA export from nucleus5.29E-03
107GO:0006289: nucleotide-excision repair5.29E-03
108GO:0006487: protein N-linked glycosylation5.29E-03
109GO:0061077: chaperone-mediated protein folding6.43E-03
110GO:0031167: rRNA methylation6.51E-03
111GO:0036065: fucosylation6.51E-03
112GO:1902183: regulation of shoot apical meristem development6.51E-03
113GO:0044209: AMP salvage6.51E-03
114GO:0010358: leaf shaping8.08E-03
115GO:0001731: formation of translation preinitiation complex8.08E-03
116GO:0051568: histone H3-K4 methylation8.08E-03
117GO:0000470: maturation of LSU-rRNA8.08E-03
118GO:1901001: negative regulation of response to salt stress9.78E-03
119GO:0009612: response to mechanical stimulus9.78E-03
120GO:0000911: cytokinesis by cell plate formation9.78E-03
121GO:0006458: 'de novo' protein folding9.78E-03
122GO:0042026: protein refolding9.78E-03
123GO:0009554: megasporogenesis9.78E-03
124GO:0016444: somatic cell DNA recombination9.78E-03
125GO:0009409: response to cold9.82E-03
126GO:0006413: translational initiation9.92E-03
127GO:0009965: leaf morphogenesis1.02E-02
128GO:0006457: protein folding1.10E-02
129GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.16E-02
130GO:0000338: protein deneddylation1.16E-02
131GO:0009396: folic acid-containing compound biosynthetic process1.16E-02
132GO:0035196: production of miRNAs involved in gene silencing by miRNA1.16E-02
133GO:0032880: regulation of protein localization1.16E-02
134GO:0048528: post-embryonic root development1.16E-02
135GO:0080156: mitochondrial mRNA modification1.32E-02
136GO:0006635: fatty acid beta-oxidation1.32E-02
137GO:0009690: cytokinin metabolic process1.35E-02
138GO:0050821: protein stabilization1.35E-02
139GO:0031540: regulation of anthocyanin biosynthetic process1.35E-02
140GO:0022900: electron transport chain1.56E-02
141GO:0001510: RNA methylation1.56E-02
142GO:0009808: lignin metabolic process1.56E-02
143GO:0006189: 'de novo' IMP biosynthetic process1.77E-02
144GO:0048589: developmental growth1.77E-02
145GO:0009060: aerobic respiration1.77E-02
146GO:0015780: nucleotide-sugar transport1.77E-02
147GO:0042761: very long-chain fatty acid biosynthetic process1.99E-02
148GO:0035999: tetrahydrofolate interconversion1.99E-02
149GO:0010449: root meristem growth1.99E-02
150GO:0043069: negative regulation of programmed cell death2.23E-02
151GO:0045036: protein targeting to chloroplast2.23E-02
152GO:0016441: posttranscriptional gene silencing2.23E-02
153GO:0006913: nucleocytoplasmic transport2.47E-02
154GO:0015770: sucrose transport2.47E-02
155GO:0048229: gametophyte development2.47E-02
156GO:0010015: root morphogenesis2.47E-02
157GO:0006790: sulfur compound metabolic process2.72E-02
158GO:0016925: protein sumoylation2.72E-02
159GO:0010043: response to zinc ion2.90E-02
160GO:0010102: lateral root morphogenesis2.98E-02
161GO:2000028: regulation of photoperiodism, flowering2.98E-02
162GO:0000724: double-strand break repair via homologous recombination3.04E-02
163GO:0048440: carpel development3.25E-02
164GO:0009933: meristem structural organization3.25E-02
165GO:0009969: xyloglucan biosynthetic process3.53E-02
166GO:0009908: flower development3.94E-02
167GO:0009926: auxin polar transport4.09E-02
168GO:0009644: response to high light intensity4.42E-02
169GO:0015031: protein transport4.53E-02
170GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.57E-02
171GO:0003333: amino acid transmembrane transport4.70E-02
172GO:0051260: protein homooligomerization4.70E-02
173GO:0010431: seed maturation4.70E-02
174GO:0006334: nucleosome assembly4.70E-02
175GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0030272: 5-formyltetrahydrofolate cyclo-ligase activity0.00E+00
4GO:0003735: structural constituent of ribosome7.41E-180
5GO:0003729: mRNA binding2.51E-36
6GO:0004298: threonine-type endopeptidase activity3.17E-16
7GO:0019843: rRNA binding4.59E-14
8GO:0008233: peptidase activity5.35E-11
9GO:0015288: porin activity6.69E-05
10GO:0008308: voltage-gated anion channel activity9.26E-05
11GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.24E-04
12GO:0008097: 5S rRNA binding1.49E-04
13GO:0004749: ribose phosphate diphosphokinase activity1.49E-04
14GO:0003746: translation elongation factor activity2.04E-04
15GO:0004576: oligosaccharyl transferase activity2.51E-04
16GO:0003723: RNA binding3.11E-04
17GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.76E-04
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.48E-04
19GO:0031177: phosphopantetheine binding5.23E-04
20GO:0000035: acyl binding6.92E-04
21GO:0047326: inositol tetrakisphosphate 5-kinase activity7.22E-04
22GO:1990189: peptide-serine-N-acetyltransferase activity7.22E-04
23GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.22E-04
24GO:0004828: serine-tRNA ligase activity7.22E-04
25GO:0005080: protein kinase C binding7.22E-04
26GO:1990190: peptide-glutamate-N-acetyltransferase activity7.22E-04
27GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.22E-04
28GO:1990259: histone-glutamine methyltransferase activity7.22E-04
29GO:0035614: snRNA stem-loop binding7.22E-04
30GO:0016817: hydrolase activity, acting on acid anhydrides7.22E-04
31GO:0000824: inositol tetrakisphosphate 3-kinase activity7.22E-04
32GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.10E-03
33GO:0043022: ribosome binding1.10E-03
34GO:0004839: ubiquitin activating enzyme activity1.56E-03
35GO:1990585: hydroxyproline O-arabinosyltransferase activity1.56E-03
36GO:0004829: threonine-tRNA ligase activity1.56E-03
37GO:0032934: sterol binding1.56E-03
38GO:0004826: phenylalanine-tRNA ligase activity1.56E-03
39GO:0005078: MAP-kinase scaffold activity1.56E-03
40GO:0030619: U1 snRNA binding1.56E-03
41GO:0004634: phosphopyruvate hydratase activity1.56E-03
42GO:0050291: sphingosine N-acyltransferase activity1.56E-03
43GO:0015173: aromatic amino acid transmembrane transporter activity1.56E-03
44GO:0001055: RNA polymerase II activity1.90E-03
45GO:0000166: nucleotide binding2.19E-03
46GO:0008649: rRNA methyltransferase activity2.57E-03
47GO:0032947: protein complex scaffold2.57E-03
48GO:0070181: small ribosomal subunit rRNA binding2.57E-03
49GO:0001054: RNA polymerase I activity2.57E-03
50GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.57E-03
51GO:0005457: GDP-fucose transmembrane transporter activity2.57E-03
52GO:0070180: large ribosomal subunit rRNA binding2.57E-03
53GO:0044183: protein binding involved in protein folding2.57E-03
54GO:0015462: ATPase-coupled protein transmembrane transporter activity2.57E-03
55GO:0008430: selenium binding2.57E-03
56GO:0001056: RNA polymerase III activity2.95E-03
57GO:0015266: protein channel activity3.36E-03
58GO:0003999: adenine phosphoribosyltransferase activity3.75E-03
59GO:0005460: UDP-glucose transmembrane transporter activity3.75E-03
60GO:0004550: nucleoside diphosphate kinase activity3.75E-03
61GO:0047627: adenylylsulfatase activity3.75E-03
62GO:0017089: glycolipid transporter activity3.75E-03
63GO:0070628: proteasome binding5.06E-03
64GO:0010011: auxin binding5.06E-03
65GO:0051861: glycolipid binding5.06E-03
66GO:0005459: UDP-galactose transmembrane transporter activity6.51E-03
67GO:0004888: transmembrane signaling receptor activity6.51E-03
68GO:0008641: small protein activating enzyme activity6.51E-03
69GO:0005275: amine transmembrane transporter activity6.51E-03
70GO:0031386: protein tag6.51E-03
71GO:0031593: polyubiquitin binding8.08E-03
72GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity8.08E-03
73GO:0102391: decanoate--CoA ligase activity9.78E-03
74GO:0051920: peroxiredoxin activity9.78E-03
75GO:0005338: nucleotide-sugar transmembrane transporter activity1.16E-02
76GO:0042162: telomeric DNA binding1.16E-02
77GO:0008121: ubiquinol-cytochrome-c reductase activity1.16E-02
78GO:0030515: snoRNA binding1.16E-02
79GO:0004467: long-chain fatty acid-CoA ligase activity1.16E-02
80GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity1.16E-02
81GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.28E-02
82GO:0004034: aldose 1-epimerase activity1.35E-02
83GO:0016209: antioxidant activity1.35E-02
84GO:0003743: translation initiation factor activity1.40E-02
85GO:0000989: transcription factor activity, transcription factor binding1.77E-02
86GO:0008417: fucosyltransferase activity1.77E-02
87GO:0051082: unfolded protein binding2.01E-02
88GO:0008515: sucrose transmembrane transporter activity2.47E-02
89GO:0046961: proton-transporting ATPase activity, rotational mechanism2.47E-02
90GO:0008794: arsenate reductase (glutaredoxin) activity2.47E-02
91GO:0008327: methyl-CpG binding2.47E-02
92GO:0000049: tRNA binding2.72E-02
93GO:0050897: cobalt ion binding2.90E-02
94GO:0003725: double-stranded RNA binding2.98E-02
95GO:0031072: heat shock protein binding2.98E-02
96GO:0003697: single-stranded DNA binding3.18E-02
97GO:0051119: sugar transmembrane transporter activity3.53E-02
98GO:0042393: histone binding3.62E-02
99GO:0043130: ubiquitin binding4.10E-02
100GO:0005528: FK506 binding4.10E-02
101GO:0051087: chaperone binding4.40E-02
102GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.70E-02
103GO:0004540: ribonuclease activity4.70E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005675: holo TFIIH complex0.00E+00
4GO:0022626: cytosolic ribosome1.08E-133
5GO:0005840: ribosome4.45E-127
6GO:0022625: cytosolic large ribosomal subunit4.68E-108
7GO:0022627: cytosolic small ribosomal subunit3.90E-76
8GO:0005829: cytosol8.88E-55
9GO:0005737: cytoplasm2.39E-46
10GO:0005730: nucleolus4.28E-35
11GO:0009506: plasmodesma3.43E-23
12GO:0015934: large ribosomal subunit5.17E-20
13GO:0005774: vacuolar membrane8.55E-19
14GO:0005839: proteasome core complex3.17E-16
15GO:0000502: proteasome complex5.00E-16
16GO:0016020: membrane1.51E-12
17GO:0005773: vacuole4.41E-12
18GO:0019773: proteasome core complex, alpha-subunit complex4.52E-10
19GO:0015935: small ribosomal subunit1.62E-07
20GO:0005618: cell wall3.06E-07
21GO:0005732: small nucleolar ribonucleoprotein complex4.60E-07
22GO:0009507: chloroplast7.40E-07
23GO:0005741: mitochondrial outer membrane4.70E-06
24GO:0019013: viral nucleocapsid2.30E-05
25GO:0005886: plasma membrane4.04E-05
26GO:0034719: SMN-Sm protein complex7.17E-05
27GO:0005853: eukaryotic translation elongation factor 1 complex7.17E-05
28GO:0005742: mitochondrial outer membrane translocase complex9.26E-05
29GO:0046930: pore complex9.26E-05
30GO:0005685: U1 snRNP1.23E-04
31GO:0071011: precatalytic spliceosome1.59E-04
32GO:0071013: catalytic step 2 spliceosome2.48E-04
33GO:0005682: U5 snRNP2.51E-04
34GO:0005665: DNA-directed RNA polymerase II, core complex3.00E-04
35GO:0008250: oligosaccharyltransferase complex3.76E-04
36GO:0005687: U4 snRNP3.76E-04
37GO:0097526: spliceosomal tri-snRNP complex3.76E-04
38GO:0005689: U12-type spliceosomal complex6.92E-04
39GO:0030686: 90S preribosome7.22E-04
40GO:0005681: spliceosomal complex7.87E-04
41GO:0071010: prespliceosome1.56E-03
42GO:0031415: NatA complex1.56E-03
43GO:0000015: phosphopyruvate hydratase complex1.56E-03
44GO:0005697: telomerase holoenzyme complex1.56E-03
45GO:0005736: DNA-directed RNA polymerase I complex1.60E-03
46GO:0005666: DNA-directed RNA polymerase III complex1.90E-03
47GO:0015030: Cajal body1.90E-03
48GO:0005686: U2 snRNP2.22E-03
49GO:0000418: DNA-directed RNA polymerase IV complex2.22E-03
50GO:0000439: core TFIIH complex2.57E-03
51GO:0046861: glyoxysomal membrane2.57E-03
52GO:0034715: pICln-Sm protein complex2.57E-03
53GO:0048471: perinuclear region of cytoplasm2.57E-03
54GO:0008541: proteasome regulatory particle, lid subcomplex2.57E-03
55GO:0009331: glycerol-3-phosphate dehydrogenase complex3.75E-03
56GO:0033180: proton-transporting V-type ATPase, V1 domain3.75E-03
57GO:1990726: Lsm1-7-Pat1 complex3.75E-03
58GO:0005834: heterotrimeric G-protein complex3.97E-03
59GO:0000419: DNA-directed RNA polymerase V complex4.76E-03
60GO:0000445: THO complex part of transcription export complex5.06E-03
61GO:0016593: Cdc73/Paf1 complex5.06E-03
62GO:0005758: mitochondrial intermembrane space5.29E-03
63GO:0070469: respiratory chain5.84E-03
64GO:0080008: Cul4-RING E3 ubiquitin ligase complex7.32E-03
65GO:0016282: eukaryotic 43S preinitiation complex8.08E-03
66GO:0031428: box C/D snoRNP complex8.08E-03
67GO:0000243: commitment complex8.08E-03
68GO:0005744: mitochondrial inner membrane presequence translocase complex8.39E-03
69GO:0033290: eukaryotic 48S preinitiation complex9.78E-03
70GO:0016272: prefoldin complex9.78E-03
71GO:0005801: cis-Golgi network9.78E-03
72GO:0000347: THO complex1.16E-02
73GO:0005688: U6 snRNP1.35E-02
74GO:0071004: U2-type prespliceosome1.35E-02
75GO:0046540: U4/U6 x U5 tri-snRNP complex1.56E-02
76GO:0009514: glyoxysome1.56E-02
77GO:0005743: mitochondrial inner membrane1.57E-02
78GO:0005747: mitochondrial respiratory chain complex I1.65E-02
79GO:0008180: COP9 signalosome1.77E-02
80GO:0016604: nuclear body1.99E-02
81GO:0005788: endoplasmic reticulum lumen2.03E-02
82GO:0005622: intracellular2.15E-02
83GO:0005740: mitochondrial envelope2.23E-02
84GO:0005783: endoplasmic reticulum2.45E-02
85GO:0005852: eukaryotic translation initiation factor 3 complex2.47E-02
86GO:0031307: integral component of mitochondrial outer membrane2.72E-02
87GO:0032040: small-subunit processome2.72E-02
88GO:0009508: plastid chromosome2.98E-02
89GO:0005750: mitochondrial respiratory chain complex III3.25E-02
90GO:0005769: early endosome3.81E-02
91GO:0045271: respiratory chain complex I4.40E-02
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Gene type



Gene DE type