GO Enrichment Analysis of Co-expressed Genes with
AT3G52920
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 2 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 3 | GO:0009661: chromoplast organization | 0.00E+00 |
| 4 | GO:0019878: lysine biosynthetic process via aminoadipic acid | 0.00E+00 |
| 5 | GO:0018215: protein phosphopantetheinylation | 0.00E+00 |
| 6 | GO:0018293: protein-FAD linkage | 0.00E+00 |
| 7 | GO:0034553: mitochondrial respiratory chain complex II assembly | 0.00E+00 |
| 8 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 9 | GO:0009902: chloroplast relocation | 1.55E-05 |
| 10 | GO:0055114: oxidation-reduction process | 3.51E-05 |
| 11 | GO:0010190: cytochrome b6f complex assembly | 3.80E-05 |
| 12 | GO:0006555: methionine metabolic process | 3.80E-05 |
| 13 | GO:0019509: L-methionine salvage from methylthioadenosine | 5.36E-05 |
| 14 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 9.31E-05 |
| 15 | GO:1902265: abscisic acid homeostasis | 1.37E-04 |
| 16 | GO:0071461: cellular response to redox state | 1.37E-04 |
| 17 | GO:0048438: floral whorl development | 1.37E-04 |
| 18 | GO:0006430: lysyl-tRNA aminoacylation | 1.37E-04 |
| 19 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 1.37E-04 |
| 20 | GO:0006567: threonine catabolic process | 1.37E-04 |
| 21 | GO:0000103: sulfate assimilation | 2.04E-04 |
| 22 | GO:2000030: regulation of response to red or far red light | 3.16E-04 |
| 23 | GO:2000071: regulation of defense response by callose deposition | 3.16E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 3.16E-04 |
| 25 | GO:0007154: cell communication | 3.16E-04 |
| 26 | GO:0010220: positive regulation of vernalization response | 3.16E-04 |
| 27 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.16E-04 |
| 28 | GO:0080183: response to photooxidative stress | 3.16E-04 |
| 29 | GO:0043100: pyrimidine nucleobase salvage | 3.16E-04 |
| 30 | GO:0031022: nuclear migration along microfilament | 5.20E-04 |
| 31 | GO:0019419: sulfate reduction | 5.20E-04 |
| 32 | GO:1901562: response to paraquat | 5.20E-04 |
| 33 | GO:0016226: iron-sulfur cluster assembly | 6.50E-04 |
| 34 | GO:2001141: regulation of RNA biosynthetic process | 7.44E-04 |
| 35 | GO:0010371: regulation of gibberellin biosynthetic process | 7.44E-04 |
| 36 | GO:0071585: detoxification of cadmium ion | 9.85E-04 |
| 37 | GO:0034613: cellular protein localization | 9.85E-04 |
| 38 | GO:0010021: amylopectin biosynthetic process | 9.85E-04 |
| 39 | GO:0070534: protein K63-linked ubiquitination | 9.85E-04 |
| 40 | GO:0006545: glycine biosynthetic process | 9.85E-04 |
| 41 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.17E-03 |
| 42 | GO:0016120: carotene biosynthetic process | 1.25E-03 |
| 43 | GO:0010236: plastoquinone biosynthetic process | 1.25E-03 |
| 44 | GO:0070814: hydrogen sulfide biosynthetic process | 1.53E-03 |
| 45 | GO:0000060: protein import into nucleus, translocation | 1.53E-03 |
| 46 | GO:0033365: protein localization to organelle | 1.53E-03 |
| 47 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.53E-03 |
| 48 | GO:0006301: postreplication repair | 1.53E-03 |
| 49 | GO:0010076: maintenance of floral meristem identity | 1.83E-03 |
| 50 | GO:0009903: chloroplast avoidance movement | 1.83E-03 |
| 51 | GO:0010189: vitamin E biosynthetic process | 1.83E-03 |
| 52 | GO:0010077: maintenance of inflorescence meristem identity | 1.83E-03 |
| 53 | GO:0050790: regulation of catalytic activity | 2.15E-03 |
| 54 | GO:0030091: protein repair | 2.49E-03 |
| 55 | GO:0050821: protein stabilization | 2.49E-03 |
| 56 | GO:0006102: isocitrate metabolic process | 2.49E-03 |
| 57 | GO:0048564: photosystem I assembly | 2.49E-03 |
| 58 | GO:0071482: cellular response to light stimulus | 2.85E-03 |
| 59 | GO:0015996: chlorophyll catabolic process | 2.85E-03 |
| 60 | GO:0006099: tricarboxylic acid cycle | 2.87E-03 |
| 61 | GO:0009658: chloroplast organization | 3.14E-03 |
| 62 | GO:0009821: alkaloid biosynthetic process | 3.22E-03 |
| 63 | GO:0009970: cellular response to sulfate starvation | 4.00E-03 |
| 64 | GO:0045036: protein targeting to chloroplast | 4.00E-03 |
| 65 | GO:0009682: induced systemic resistance | 4.42E-03 |
| 66 | GO:0008285: negative regulation of cell proliferation | 4.42E-03 |
| 67 | GO:0006879: cellular iron ion homeostasis | 4.42E-03 |
| 68 | GO:0006352: DNA-templated transcription, initiation | 4.42E-03 |
| 69 | GO:0010582: floral meristem determinacy | 4.85E-03 |
| 70 | GO:0045454: cell redox homeostasis | 5.18E-03 |
| 71 | GO:0030048: actin filament-based movement | 5.30E-03 |
| 72 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.30E-03 |
| 73 | GO:0010207: photosystem II assembly | 5.76E-03 |
| 74 | GO:0051017: actin filament bundle assembly | 7.22E-03 |
| 75 | GO:0019344: cysteine biosynthetic process | 7.22E-03 |
| 76 | GO:0008299: isoprenoid biosynthetic process | 7.73E-03 |
| 77 | GO:0006418: tRNA aminoacylation for protein translation | 7.73E-03 |
| 78 | GO:0010073: meristem maintenance | 7.73E-03 |
| 79 | GO:0031408: oxylipin biosynthetic process | 8.26E-03 |
| 80 | GO:0006366: transcription from RNA polymerase II promoter | 8.26E-03 |
| 81 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.79E-03 |
| 82 | GO:0010227: floral organ abscission | 9.35E-03 |
| 83 | GO:0042335: cuticle development | 1.11E-02 |
| 84 | GO:0080022: primary root development | 1.11E-02 |
| 85 | GO:0010118: stomatal movement | 1.11E-02 |
| 86 | GO:0006520: cellular amino acid metabolic process | 1.17E-02 |
| 87 | GO:0006662: glycerol ether metabolic process | 1.17E-02 |
| 88 | GO:0010182: sugar mediated signaling pathway | 1.17E-02 |
| 89 | GO:0019252: starch biosynthetic process | 1.29E-02 |
| 90 | GO:0009739: response to gibberellin | 1.31E-02 |
| 91 | GO:0002229: defense response to oomycetes | 1.36E-02 |
| 92 | GO:0030163: protein catabolic process | 1.49E-02 |
| 93 | GO:0006464: cellular protein modification process | 1.55E-02 |
| 94 | GO:0045893: positive regulation of transcription, DNA-templated | 1.67E-02 |
| 95 | GO:0016126: sterol biosynthetic process | 1.76E-02 |
| 96 | GO:0010029: regulation of seed germination | 1.83E-02 |
| 97 | GO:0010411: xyloglucan metabolic process | 1.98E-02 |
| 98 | GO:0006950: response to stress | 1.98E-02 |
| 99 | GO:0016311: dephosphorylation | 2.05E-02 |
| 100 | GO:0048481: plant ovule development | 2.12E-02 |
| 101 | GO:0018298: protein-chromophore linkage | 2.12E-02 |
| 102 | GO:0009407: toxin catabolic process | 2.28E-02 |
| 103 | GO:0010043: response to zinc ion | 2.36E-02 |
| 104 | GO:0007568: aging | 2.36E-02 |
| 105 | GO:0009867: jasmonic acid mediated signaling pathway | 2.51E-02 |
| 106 | GO:0009637: response to blue light | 2.51E-02 |
| 107 | GO:0034599: cellular response to oxidative stress | 2.60E-02 |
| 108 | GO:0009640: photomorphogenesis | 3.01E-02 |
| 109 | GO:0009636: response to toxic substance | 3.27E-02 |
| 110 | GO:0031347: regulation of defense response | 3.45E-02 |
| 111 | GO:0000165: MAPK cascade | 3.45E-02 |
| 112 | GO:0009753: response to jasmonic acid | 3.56E-02 |
| 113 | GO:0009809: lignin biosynthetic process | 3.72E-02 |
| 114 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.82E-02 |
| 115 | GO:0009620: response to fungus | 4.49E-02 |
| 116 | GO:0006508: proteolysis | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 3 | GO:0008897: holo-[acyl-carrier-protein] synthase activity | 0.00E+00 |
| 4 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 5 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 6 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 7 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.53E-06 |
| 8 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 8.27E-06 |
| 9 | GO:0004824: lysine-tRNA ligase activity | 1.37E-04 |
| 10 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.37E-04 |
| 11 | GO:0004793: threonine aldolase activity | 1.37E-04 |
| 12 | GO:0016783: sulfurtransferase activity | 1.37E-04 |
| 13 | GO:0008732: L-allo-threonine aldolase activity | 1.37E-04 |
| 14 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.37E-04 |
| 15 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.37E-04 |
| 16 | GO:0016491: oxidoreductase activity | 2.35E-04 |
| 17 | GO:0050347: trans-octaprenyltranstransferase activity | 3.16E-04 |
| 18 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 3.16E-04 |
| 19 | GO:0004046: aminoacylase activity | 3.16E-04 |
| 20 | GO:0003988: acetyl-CoA C-acyltransferase activity | 3.16E-04 |
| 21 | GO:0008967: phosphoglycolate phosphatase activity | 3.16E-04 |
| 22 | GO:0009973: adenylyl-sulfate reductase activity | 3.16E-04 |
| 23 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 3.16E-04 |
| 24 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 3.16E-04 |
| 25 | GO:0043425: bHLH transcription factor binding | 3.16E-04 |
| 26 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 3.16E-04 |
| 27 | GO:0033201: alpha-1,4-glucan synthase activity | 3.16E-04 |
| 28 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.20E-04 |
| 29 | GO:0004373: glycogen (starch) synthase activity | 5.20E-04 |
| 30 | GO:0003913: DNA photolyase activity | 5.20E-04 |
| 31 | GO:0032947: protein complex scaffold | 5.20E-04 |
| 32 | GO:0004557: alpha-galactosidase activity | 5.20E-04 |
| 33 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 5.20E-04 |
| 34 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 5.20E-04 |
| 35 | GO:0004180: carboxypeptidase activity | 5.20E-04 |
| 36 | GO:0000254: C-4 methylsterol oxidase activity | 7.44E-04 |
| 37 | GO:0004792: thiosulfate sulfurtransferase activity | 7.44E-04 |
| 38 | GO:0016987: sigma factor activity | 9.85E-04 |
| 39 | GO:0009011: starch synthase activity | 9.85E-04 |
| 40 | GO:0001053: plastid sigma factor activity | 9.85E-04 |
| 41 | GO:0048038: quinone binding | 1.17E-03 |
| 42 | GO:0008177: succinate dehydrogenase (ubiquinone) activity | 1.25E-03 |
| 43 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.33E-03 |
| 44 | GO:0004709: MAP kinase kinase kinase activity | 1.53E-03 |
| 45 | GO:0016621: cinnamoyl-CoA reductase activity | 2.15E-03 |
| 46 | GO:0009881: photoreceptor activity | 2.15E-03 |
| 47 | GO:0071949: FAD binding | 3.22E-03 |
| 48 | GO:0016844: strictosidine synthase activity | 3.60E-03 |
| 49 | GO:0015266: protein channel activity | 5.30E-03 |
| 50 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 5.30E-03 |
| 51 | GO:0031072: heat shock protein binding | 5.30E-03 |
| 52 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.76E-03 |
| 53 | GO:0015035: protein disulfide oxidoreductase activity | 6.96E-03 |
| 54 | GO:0001046: core promoter sequence-specific DNA binding | 7.22E-03 |
| 55 | GO:0051536: iron-sulfur cluster binding | 7.22E-03 |
| 56 | GO:0004176: ATP-dependent peptidase activity | 8.26E-03 |
| 57 | GO:0005506: iron ion binding | 8.86E-03 |
| 58 | GO:0047134: protein-disulfide reductase activity | 1.05E-02 |
| 59 | GO:0004812: aminoacyl-tRNA ligase activity | 1.05E-02 |
| 60 | GO:0008080: N-acetyltransferase activity | 1.17E-02 |
| 61 | GO:0010181: FMN binding | 1.23E-02 |
| 62 | GO:0050662: coenzyme binding | 1.23E-02 |
| 63 | GO:0004791: thioredoxin-disulfide reductase activity | 1.23E-02 |
| 64 | GO:0004197: cysteine-type endopeptidase activity | 1.42E-02 |
| 65 | GO:0016791: phosphatase activity | 1.55E-02 |
| 66 | GO:0004672: protein kinase activity | 1.62E-02 |
| 67 | GO:0008237: metallopeptidase activity | 1.62E-02 |
| 68 | GO:0016413: O-acetyltransferase activity | 1.69E-02 |
| 69 | GO:0000287: magnesium ion binding | 1.78E-02 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 1.85E-02 |
| 71 | GO:0030247: polysaccharide binding | 1.98E-02 |
| 72 | GO:0008236: serine-type peptidase activity | 2.05E-02 |
| 73 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.12E-02 |
| 74 | GO:0004222: metalloendopeptidase activity | 2.28E-02 |
| 75 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.36E-02 |
| 76 | GO:0061630: ubiquitin protein ligase activity | 2.37E-02 |
| 77 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.51E-02 |
| 78 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.68E-02 |
| 79 | GO:0004364: glutathione transferase activity | 2.93E-02 |
| 80 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.19E-02 |
| 81 | GO:0005198: structural molecule activity | 3.27E-02 |
| 82 | GO:0051287: NAD binding | 3.45E-02 |
| 83 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.72E-02 |
| 84 | GO:0016298: lipase activity | 3.82E-02 |
| 85 | GO:0031625: ubiquitin protein ligase binding | 4.00E-02 |
| 86 | GO:0008234: cysteine-type peptidase activity | 4.00E-02 |
| 87 | GO:0051082: unfolded protein binding | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.45E-11 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 7.94E-04 |
| 3 | GO:0009526: plastid envelope | 9.85E-04 |
| 4 | GO:0009527: plastid outer membrane | 9.85E-04 |
| 5 | GO:0031372: UBC13-MMS2 complex | 9.85E-04 |
| 6 | GO:0005773: vacuole | 1.74E-03 |
| 7 | GO:0009501: amyloplast | 2.49E-03 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.22E-03 |
| 9 | GO:0005884: actin filament | 4.42E-03 |
| 10 | GO:0005764: lysosome | 5.76E-03 |
| 11 | GO:0005747: mitochondrial respiratory chain complex I | 5.80E-03 |
| 12 | GO:0009570: chloroplast stroma | 8.19E-03 |
| 13 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.92E-03 |
| 14 | GO:0005739: mitochondrion | 1.47E-02 |
| 15 | GO:0005777: peroxisome | 1.67E-02 |
| 16 | GO:0031969: chloroplast membrane | 2.25E-02 |
| 17 | GO:0031977: thylakoid lumen | 2.84E-02 |
| 18 | GO:0005829: cytosol | 2.96E-02 |
| 19 | GO:0016607: nuclear speck | 4.29E-02 |
| 20 | GO:0009536: plastid | 4.36E-02 |
| 21 | GO:0009706: chloroplast inner membrane | 4.78E-02 |