Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006069: ethanol oxidation0.00E+00
2GO:0042908: xenobiotic transport0.00E+00
3GO:0006592: ornithine biosynthetic process0.00E+00
4GO:0046292: formaldehyde metabolic process0.00E+00
5GO:0023052: signaling0.00E+00
6GO:0006721: terpenoid metabolic process0.00E+00
7GO:0006006: glucose metabolic process9.09E-06
8GO:0055114: oxidation-reduction process3.51E-05
9GO:0050790: regulation of catalytic activity7.18E-05
10GO:0015996: chlorophyll catabolic process1.17E-04
11GO:0010265: SCF complex assembly1.37E-04
12GO:0015798: myo-inositol transport1.37E-04
13GO:0080093: regulation of photorespiration1.37E-04
14GO:0031998: regulation of fatty acid beta-oxidation1.37E-04
15GO:0000305: response to oxygen radical1.37E-04
16GO:0016487: farnesol metabolic process1.37E-04
17GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport1.37E-04
18GO:0019441: tryptophan catabolic process to kynurenine3.16E-04
19GO:0097054: L-glutamate biosynthetic process3.16E-04
20GO:0080183: response to photooxidative stress3.16E-04
21GO:0046939: nucleotide phosphorylation3.16E-04
22GO:0030010: establishment of cell polarity3.16E-04
23GO:0043255: regulation of carbohydrate biosynthetic process3.16E-04
24GO:0019388: galactose catabolic process3.16E-04
25GO:1901562: response to paraquat5.20E-04
26GO:0030835: negative regulation of actin filament depolymerization5.20E-04
27GO:0006760: folic acid-containing compound metabolic process5.20E-04
28GO:0046034: ATP metabolic process5.20E-04
29GO:0051603: proteolysis involved in cellular protein catabolic process6.16E-04
30GO:0009590: detection of gravity7.44E-04
31GO:0006537: glutamate biosynthetic process7.44E-04
32GO:0015700: arsenite transport7.44E-04
33GO:0010255: glucose mediated signaling pathway7.44E-04
34GO:1901332: negative regulation of lateral root development7.44E-04
35GO:0015991: ATP hydrolysis coupled proton transport8.93E-04
36GO:0042391: regulation of membrane potential8.93E-04
37GO:0044205: 'de novo' UMP biosynthetic process9.85E-04
38GO:0006646: phosphatidylethanolamine biosynthetic process9.85E-04
39GO:0019676: ammonia assimilation cycle9.85E-04
40GO:0006221: pyrimidine nucleotide biosynthetic process9.85E-04
41GO:0006749: glutathione metabolic process9.85E-04
42GO:0032366: intracellular sterol transport9.85E-04
43GO:0055085: transmembrane transport1.02E-03
44GO:0015986: ATP synthesis coupled proton transport1.03E-03
45GO:0006097: glyoxylate cycle1.25E-03
46GO:0009229: thiamine diphosphate biosynthetic process1.25E-03
47GO:0018344: protein geranylgeranylation1.25E-03
48GO:0009697: salicylic acid biosynthetic process1.25E-03
49GO:0046686: response to cadmium ion1.35E-03
50GO:0006555: methionine metabolic process1.53E-03
51GO:0009228: thiamine biosynthetic process1.53E-03
52GO:0003006: developmental process involved in reproduction1.53E-03
53GO:0009816: defense response to bacterium, incompatible interaction1.77E-03
54GO:0019509: L-methionine salvage from methylthioadenosine1.83E-03
55GO:1901001: negative regulation of response to salt stress1.83E-03
56GO:0010044: response to aluminum ion2.15E-03
57GO:0051693: actin filament capping2.15E-03
58GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.15E-03
59GO:0008219: cell death2.18E-03
60GO:0006811: ion transport2.40E-03
61GO:0000028: ribosomal small subunit assembly2.49E-03
62GO:0048658: anther wall tapetum development2.49E-03
63GO:0005978: glycogen biosynthetic process2.49E-03
64GO:0006491: N-glycan processing2.49E-03
65GO:0009735: response to cytokinin2.72E-03
66GO:0006526: arginine biosynthetic process2.85E-03
67GO:0009880: embryonic pattern specification2.85E-03
68GO:0006099: tricarboxylic acid cycle2.87E-03
69GO:0009826: unidimensional cell growth2.99E-03
70GO:0046685: response to arsenic-containing substance3.22E-03
71GO:0009821: alkaloid biosynthetic process3.22E-03
72GO:0080144: amino acid homeostasis3.22E-03
73GO:0042761: very long-chain fatty acid biosynthetic process3.60E-03
74GO:0000103: sulfate assimilation4.00E-03
75GO:0018119: peptidyl-cysteine S-nitrosylation4.42E-03
76GO:0048229: gametophyte development4.42E-03
77GO:0052544: defense response by callose deposition in cell wall4.42E-03
78GO:0005975: carbohydrate metabolic process4.78E-03
79GO:0006790: sulfur compound metabolic process4.85E-03
80GO:0002213: defense response to insect4.85E-03
81GO:0006508: proteolysis5.16E-03
82GO:0006108: malate metabolic process5.30E-03
83GO:0006094: gluconeogenesis5.30E-03
84GO:0006829: zinc II ion transport5.30E-03
85GO:0006096: glycolytic process5.62E-03
86GO:0048316: seed development5.80E-03
87GO:0009620: response to fungus6.17E-03
88GO:0046854: phosphatidylinositol phosphorylation6.23E-03
89GO:0019853: L-ascorbic acid biosynthetic process6.23E-03
90GO:0010039: response to iron ion6.23E-03
91GO:0016042: lipid catabolic process6.51E-03
92GO:0018105: peptidyl-serine phosphorylation6.96E-03
93GO:0051017: actin filament bundle assembly7.22E-03
94GO:0019953: sexual reproduction7.73E-03
95GO:0009695: jasmonic acid biosynthetic process7.73E-03
96GO:0015992: proton transport8.26E-03
97GO:0061077: chaperone-mediated protein folding8.26E-03
98GO:0031408: oxylipin biosynthetic process8.26E-03
99GO:0031348: negative regulation of defense response8.79E-03
100GO:0019748: secondary metabolic process8.79E-03
101GO:0035428: hexose transmembrane transport8.79E-03
102GO:0009058: biosynthetic process8.92E-03
103GO:0006012: galactose metabolic process9.35E-03
104GO:0080022: primary root development1.11E-02
105GO:0010051: xylem and phloem pattern formation1.11E-02
106GO:0006662: glycerol ether metabolic process1.17E-02
107GO:0046323: glucose import1.17E-02
108GO:0006520: cellular amino acid metabolic process1.17E-02
109GO:0010154: fruit development1.17E-02
110GO:0019252: starch biosynthetic process1.29E-02
111GO:0008654: phospholipid biosynthetic process1.29E-02
112GO:0055072: iron ion homeostasis1.29E-02
113GO:0009555: pollen development1.40E-02
114GO:0035556: intracellular signal transduction1.50E-02
115GO:0009828: plant-type cell wall loosening1.55E-02
116GO:0010286: heat acclimation1.62E-02
117GO:0009615: response to virus1.76E-02
118GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.83E-02
119GO:0009651: response to salt stress1.88E-02
120GO:0006970: response to osmotic stress1.96E-02
121GO:0009817: defense response to fungus, incompatible interaction2.12E-02
122GO:0010311: lateral root formation2.20E-02
123GO:0006499: N-terminal protein myristoylation2.28E-02
124GO:0010043: response to zinc ion2.36E-02
125GO:0007568: aging2.36E-02
126GO:0048527: lateral root development2.36E-02
127GO:0046777: protein autophosphorylation2.41E-02
128GO:0009853: photorespiration2.51E-02
129GO:0034599: cellular response to oxidative stress2.60E-02
130GO:0045454: cell redox homeostasis2.70E-02
131GO:0045892: negative regulation of transcription, DNA-templated2.74E-02
132GO:0030001: metal ion transport2.76E-02
133GO:0006631: fatty acid metabolic process2.84E-02
134GO:0009408: response to heat3.32E-02
135GO:0006855: drug transmembrane transport3.36E-02
136GO:0042742: defense response to bacterium3.39E-02
137GO:0048364: root development3.47E-02
138GO:0042538: hyperosmotic salinity response3.54E-02
139GO:0009753: response to jasmonic acid3.56E-02
140GO:0009809: lignin biosynthetic process3.72E-02
141GO:0009736: cytokinin-activated signaling pathway3.72E-02
142GO:0009733: response to auxin3.91E-02
143GO:0006857: oligopeptide transport3.91E-02
144GO:0009626: plant-type hypersensitive response4.39E-02
145GO:0009734: auxin-activated signaling pathway4.66E-02
RankGO TermAdjusted P value
1GO:0047886: farnesol dehydrogenase activity0.00E+00
2GO:0008777: acetylornithine deacetylase activity0.00E+00
3GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
4GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
5GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
6GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
7GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
8GO:0015930: glutamate synthase activity0.00E+00
9GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
10GO:0032441: pheophorbide a oxygenase activity0.00E+00
11GO:0004151: dihydroorotase activity0.00E+00
12GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
13GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
14GO:0050334: thiaminase activity0.00E+00
15GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
16GO:0052692: raffinose alpha-galactosidase activity3.53E-06
17GO:0004557: alpha-galactosidase activity3.53E-06
18GO:0004301: epoxide hydrolase activity1.55E-05
19GO:0005261: cation channel activity5.36E-05
20GO:0046933: proton-transporting ATP synthase activity, rotational mechanism6.04E-05
21GO:0008137: NADH dehydrogenase (ubiquinone) activity8.34E-05
22GO:0016041: glutamate synthase (ferredoxin) activity1.37E-04
23GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity1.37E-04
24GO:0080048: GDP-D-glucose phosphorylase activity1.37E-04
25GO:0004347: glucose-6-phosphate isomerase activity1.37E-04
26GO:0016776: phosphotransferase activity, phosphate group as acceptor1.37E-04
27GO:0016780: phosphotransferase activity, for other substituted phosphate groups1.37E-04
28GO:0008802: betaine-aldehyde dehydrogenase activity1.37E-04
29GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity1.37E-04
30GO:0080047: GDP-L-galactose phosphorylase activity1.37E-04
31GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.37E-04
32GO:0004321: fatty-acyl-CoA synthase activity1.37E-04
33GO:0071992: phytochelatin transmembrane transporter activity1.37E-04
34GO:0004307: ethanolaminephosphotransferase activity1.37E-04
35GO:0008559: xenobiotic-transporting ATPase activity2.39E-04
36GO:0005516: calmodulin binding3.06E-04
37GO:0004022: alcohol dehydrogenase (NAD) activity3.14E-04
38GO:0051980: iron-nicotianamine transmembrane transporter activity3.16E-04
39GO:0005366: myo-inositol:proton symporter activity3.16E-04
40GO:0004362: glutathione-disulfide reductase activity3.16E-04
41GO:0030572: phosphatidyltransferase activity3.16E-04
42GO:0004142: diacylglycerol cholinephosphotransferase activity3.16E-04
43GO:0004061: arylformamidase activity3.16E-04
44GO:0019172: glyoxalase III activity3.16E-04
45GO:0004614: phosphoglucomutase activity3.16E-04
46GO:0030552: cAMP binding3.99E-04
47GO:0030553: cGMP binding3.99E-04
48GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity5.20E-04
49GO:0010277: chlorophyllide a oxygenase [overall] activity5.20E-04
50GO:0032947: protein complex scaffold5.20E-04
51GO:0004663: Rab geranylgeranyltransferase activity5.20E-04
52GO:0016788: hydrolase activity, acting on ester bonds5.41E-04
53GO:0005216: ion channel activity5.43E-04
54GO:0008234: cysteine-type peptidase activity6.69E-04
55GO:0016656: monodehydroascorbate reductase (NADH) activity7.44E-04
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity7.44E-04
57GO:0019201: nucleotide kinase activity7.44E-04
58GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.57E-04
59GO:0005249: voltage-gated potassium channel activity8.93E-04
60GO:0030551: cyclic nucleotide binding8.93E-04
61GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor9.85E-04
62GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances9.85E-04
63GO:0005507: copper ion binding1.24E-03
64GO:0051538: 3 iron, 4 sulfur cluster binding1.25E-03
65GO:0004197: cysteine-type endopeptidase activity1.25E-03
66GO:0004040: amidase activity1.25E-03
67GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.53E-03
68GO:0016615: malate dehydrogenase activity1.53E-03
69GO:0080046: quercetin 4'-O-glucosyltransferase activity1.53E-03
70GO:0004029: aldehyde dehydrogenase (NAD) activity1.53E-03
71GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.53E-03
72GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity1.53E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.83E-03
74GO:0004017: adenylate kinase activity1.83E-03
75GO:0030060: L-malate dehydrogenase activity1.83E-03
76GO:0009931: calcium-dependent protein serine/threonine kinase activity1.87E-03
77GO:0004683: calmodulin-dependent protein kinase activity1.97E-03
78GO:0008320: protein transmembrane transporter activity2.15E-03
79GO:0005085: guanyl-nucleotide exchange factor activity2.15E-03
80GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.45E-03
81GO:0004034: aldose 1-epimerase activity2.49E-03
82GO:0004869: cysteine-type endopeptidase inhibitor activity2.49E-03
83GO:0050897: cobalt ion binding2.51E-03
84GO:0015078: hydrogen ion transmembrane transporter activity2.85E-03
85GO:0050661: NADP binding3.13E-03
86GO:0051539: 4 iron, 4 sulfur cluster binding3.13E-03
87GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism3.22E-03
88GO:0016207: 4-coumarate-CoA ligase activity3.22E-03
89GO:0016844: strictosidine synthase activity3.60E-03
90GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity3.60E-03
91GO:0046961: proton-transporting ATPase activity, rotational mechanism4.42E-03
92GO:0052689: carboxylic ester hydrolase activity4.68E-03
93GO:0015198: oligopeptide transporter activity4.85E-03
94GO:0016298: lipase activity4.92E-03
95GO:0031072: heat shock protein binding5.30E-03
96GO:0008266: poly(U) RNA binding5.76E-03
97GO:0051536: iron-sulfur cluster binding7.22E-03
98GO:0005528: FK506 binding7.22E-03
99GO:0008324: cation transmembrane transporter activity7.73E-03
100GO:0004298: threonine-type endopeptidase activity8.26E-03
101GO:0047134: protein-disulfide reductase activity1.05E-02
102GO:0005524: ATP binding1.15E-02
103GO:0046873: metal ion transmembrane transporter activity1.17E-02
104GO:0004791: thioredoxin-disulfide reductase activity1.23E-02
105GO:0016853: isomerase activity1.23E-02
106GO:0005355: glucose transmembrane transporter activity1.23E-02
107GO:0050662: coenzyme binding1.23E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.49E-02
109GO:0051015: actin filament binding1.49E-02
110GO:0046872: metal ion binding1.62E-02
111GO:0008237: metallopeptidase activity1.62E-02
112GO:0030247: polysaccharide binding1.98E-02
113GO:0008236: serine-type peptidase activity2.05E-02
114GO:0050660: flavin adenine dinucleotide binding2.10E-02
115GO:0003993: acid phosphatase activity2.60E-02
116GO:0016787: hydrolase activity2.84E-02
117GO:0004185: serine-type carboxypeptidase activity3.01E-02
118GO:0005509: calcium ion binding3.07E-02
119GO:0051537: 2 iron, 2 sulfur cluster binding3.19E-02
120GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.36E-02
121GO:0051287: NAD binding3.45E-02
122GO:0016874: ligase activity4.58E-02
123GO:0022857: transmembrane transporter activity4.58E-02
124GO:0016491: oxidoreductase activity4.75E-02
125GO:0051082: unfolded protein binding4.78E-02
126GO:0015035: protein disulfide oxidoreductase activity4.88E-02
RankGO TermAdjusted P value
1GO:0000274: mitochondrial proton-transporting ATP synthase, stator stalk0.00E+00
2GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
3GO:0005747: mitochondrial respiratory chain complex I1.65E-07
4GO:0005774: vacuolar membrane8.81E-07
5GO:0005773: vacuole1.16E-06
6GO:0005753: mitochondrial proton-transporting ATP synthase complex1.38E-05
7GO:0000325: plant-type vacuole1.48E-05
8GO:0005777: peroxisome2.34E-05
9GO:0005829: cytosol3.15E-04
10GO:0005764: lysosome3.55E-04
11GO:0005783: endoplasmic reticulum3.87E-04
12GO:0005782: peroxisomal matrix5.20E-04
13GO:0000276: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)7.44E-04
14GO:0005968: Rab-protein geranylgeranyltransferase complex7.44E-04
15GO:0033180: proton-transporting V-type ATPase, V1 domain7.44E-04
16GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)9.85E-04
17GO:0009507: chloroplast1.16E-03
18GO:0010319: stromule1.50E-03
19GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)1.53E-03
20GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane2.15E-03
21GO:0009501: amyloplast2.49E-03
22GO:0045273: respiratory chain complex II2.49E-03
23GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.49E-03
24GO:0005763: mitochondrial small ribosomal subunit3.22E-03
25GO:0048471: perinuclear region of cytoplasm4.42E-03
26GO:0005886: plasma membrane4.86E-03
27GO:0045271: respiratory chain complex I7.73E-03
28GO:0070469: respiratory chain7.73E-03
29GO:0005839: proteasome core complex8.26E-03
30GO:0009941: chloroplast envelope1.18E-02
31GO:0009536: plastid1.24E-02
32GO:0005615: extracellular space1.31E-02
33GO:0032580: Golgi cisterna membrane1.55E-02
34GO:0005730: nucleolus2.00E-02
35GO:0048046: apoplast2.16E-02
36GO:0031969: chloroplast membrane2.25E-02
37GO:0090406: pollen tube3.01E-02
38GO:0031966: mitochondrial membrane3.54E-02
39GO:0000502: proteasome complex3.72E-02
40GO:0005576: extracellular region4.08E-02
41GO:0016020: membrane4.38E-02
42GO:0005887: integral component of plasma membrane4.50E-02
43GO:0009706: chloroplast inner membrane4.78E-02
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Gene type



Gene DE type