Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0007530: sex determination0.00E+00
2GO:0090239: regulation of histone H4 acetylation0.00E+00
3GO:0000740: nuclear membrane fusion0.00E+00
4GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
5GO:0046487: glyoxylate metabolic process0.00E+00
6GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
7GO:0006412: translation1.04E-160
8GO:0042254: ribosome biogenesis3.11E-67
9GO:0000027: ribosomal large subunit assembly5.01E-12
10GO:0000028: ribosomal small subunit assembly5.73E-07
11GO:0006626: protein targeting to mitochondrion8.69E-06
12GO:0009955: adaxial/abaxial pattern specification1.38E-05
13GO:0009735: response to cytokinin3.12E-05
14GO:1902626: assembly of large subunit precursor of preribosome4.12E-05
15GO:0002181: cytoplasmic translation4.12E-05
16GO:0000387: spliceosomal snRNP assembly7.99E-05
17GO:0006820: anion transport1.57E-04
18GO:1990258: histone glutamine methylation5.29E-04
19GO:0032365: intracellular lipid transport5.29E-04
20GO:0006407: rRNA export from nucleus5.29E-04
21GO:0031120: snRNA pseudouridine synthesis5.29E-04
22GO:0031118: rRNA pseudouridine synthesis5.29E-04
23GO:0015801: aromatic amino acid transport5.29E-04
24GO:0030490: maturation of SSU-rRNA5.29E-04
25GO:2001006: regulation of cellulose biosynthetic process5.29E-04
26GO:0000494: box C/D snoRNA 3'-end processing5.29E-04
27GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.29E-04
28GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.29E-04
29GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.59E-04
30GO:0006414: translational elongation6.00E-04
31GO:0000398: mRNA splicing, via spliceosome6.09E-04
32GO:0098656: anion transmembrane transport1.01E-03
33GO:0045905: positive regulation of translational termination1.14E-03
34GO:0071668: plant-type cell wall assembly1.14E-03
35GO:0045901: positive regulation of translational elongation1.14E-03
36GO:0045041: protein import into mitochondrial intermembrane space1.14E-03
37GO:0048569: post-embryonic animal organ development1.14E-03
38GO:0043981: histone H4-K5 acetylation1.14E-03
39GO:0006452: translational frameshifting1.14E-03
40GO:0010198: synergid death1.14E-03
41GO:0009967: positive regulation of signal transduction1.14E-03
42GO:0009150: purine ribonucleotide metabolic process1.87E-03
43GO:0045793: positive regulation of cell size1.87E-03
44GO:0010476: gibberellin mediated signaling pathway1.87E-03
45GO:0042256: mature ribosome assembly1.87E-03
46GO:0046168: glycerol-3-phosphate catabolic process1.87E-03
47GO:0006165: nucleoside diphosphate phosphorylation2.70E-03
48GO:0006228: UTP biosynthetic process2.70E-03
49GO:0006164: purine nucleotide biosynthetic process2.70E-03
50GO:0009558: embryo sac cellularization2.70E-03
51GO:0032877: positive regulation of DNA endoreduplication2.70E-03
52GO:0007004: telomere maintenance via telomerase2.70E-03
53GO:0070301: cellular response to hydrogen peroxide2.70E-03
54GO:0051085: chaperone mediated protein folding requiring cofactor2.70E-03
55GO:0006241: CTP biosynthetic process2.70E-03
56GO:0006072: glycerol-3-phosphate metabolic process2.70E-03
57GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.70E-03
58GO:0030150: protein import into mitochondrial matrix3.29E-03
59GO:0006289: nucleotide-excision repair3.29E-03
60GO:0051781: positive regulation of cell division3.64E-03
61GO:0042274: ribosomal small subunit biogenesis3.64E-03
62GO:0006183: GTP biosynthetic process3.64E-03
63GO:0006621: protein retention in ER lumen3.64E-03
64GO:0031167: rRNA methylation4.67E-03
65GO:0009793: embryo development ending in seed dormancy4.70E-03
66GO:0008283: cell proliferation4.75E-03
67GO:0006413: translational initiation4.79E-03
68GO:0009965: leaf morphogenesis5.52E-03
69GO:0009651: response to salt stress5.60E-03
70GO:0045040: protein import into mitochondrial outer membrane5.79E-03
71GO:0000470: maturation of LSU-rRNA5.79E-03
72GO:0043248: proteasome assembly5.79E-03
73GO:0000413: protein peptidyl-prolyl isomerization6.09E-03
74GO:0010197: polar nucleus fusion6.57E-03
75GO:0015031: protein transport6.61E-03
76GO:0042026: protein refolding6.99E-03
77GO:0006458: 'de novo' protein folding6.99E-03
78GO:0009554: megasporogenesis6.99E-03
79GO:1901001: negative regulation of response to salt stress6.99E-03
80GO:0000911: cytokinesis by cell plate formation6.99E-03
81GO:0032880: regulation of protein localization8.28E-03
82GO:0001522: pseudouridine synthesis9.64E-03
83GO:0050821: protein stabilization9.64E-03
84GO:0001510: RNA methylation1.11E-02
85GO:0010204: defense response signaling pathway, resistance gene-independent1.11E-02
86GO:0009808: lignin metabolic process1.11E-02
87GO:0022900: electron transport chain1.11E-02
88GO:0006189: 'de novo' IMP biosynthetic process1.26E-02
89GO:0048589: developmental growth1.26E-02
90GO:0009060: aerobic respiration1.26E-02
91GO:0009245: lipid A biosynthetic process1.26E-02
92GO:0010449: root meristem growth1.42E-02
93GO:0015770: sucrose transport1.75E-02
94GO:0048229: gametophyte development1.75E-02
95GO:0010015: root morphogenesis1.75E-02
96GO:0006913: nucleocytoplasmic transport1.75E-02
97GO:0016925: protein sumoylation1.93E-02
98GO:0006790: sulfur compound metabolic process1.93E-02
99GO:0009409: response to cold1.95E-02
100GO:0010102: lateral root morphogenesis2.12E-02
101GO:0010628: positive regulation of gene expression2.12E-02
102GO:2000028: regulation of photoperiodism, flowering2.12E-02
103GO:0006446: regulation of translational initiation2.31E-02
104GO:0048467: gynoecium development2.31E-02
105GO:0046686: response to cadmium ion2.60E-02
106GO:0008380: RNA splicing2.74E-02
107GO:0009644: response to high light intensity2.75E-02
108GO:0006406: mRNA export from nucleus2.91E-02
109GO:0003333: amino acid transmembrane transport3.34E-02
110GO:0051260: protein homooligomerization3.34E-02
111GO:0010431: seed maturation3.34E-02
112GO:0061077: chaperone-mediated protein folding3.34E-02
113GO:0006364: rRNA processing3.42E-02
114GO:0007005: mitochondrion organization3.56E-02
115GO:0040007: growth3.79E-02
116GO:0071215: cellular response to abscisic acid stimulus3.79E-02
117GO:0019722: calcium-mediated signaling4.02E-02
118GO:0010089: xylem development4.02E-02
119GO:0008033: tRNA processing4.50E-02
120GO:0009553: embryo sac development4.71E-02
RankGO TermAdjusted P value
1GO:0034513: box H/ACA snoRNA binding0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0003735: structural constituent of ribosome7.96E-196
4GO:0003729: mRNA binding4.24E-37
5GO:0019843: rRNA binding5.12E-17
6GO:0003746: translation elongation factor activity6.16E-06
7GO:0015288: porin activity3.20E-05
8GO:0008308: voltage-gated anion channel activity4.50E-05
9GO:0008097: 5S rRNA binding8.79E-05
10GO:0003723: RNA binding3.63E-04
11GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.99E-04
12GO:0005080: protein kinase C binding5.29E-04
13GO:1990259: histone-glutamine methyltransferase activity5.29E-04
14GO:0035614: snRNA stem-loop binding5.29E-04
15GO:0030515: snoRNA binding5.59E-04
16GO:0008121: ubiquinol-cytochrome-c reductase activity5.59E-04
17GO:0043022: ribosome binding6.96E-04
18GO:0005078: MAP-kinase scaffold activity1.14E-03
19GO:0030619: U1 snRNA binding1.14E-03
20GO:0015173: aromatic amino acid transmembrane transporter activity1.14E-03
21GO:0070034: telomerase RNA binding1.14E-03
22GO:0032934: sterol binding1.14E-03
23GO:0044183: protein binding involved in protein folding1.61E-03
24GO:0032947: protein complex scaffold1.87E-03
25GO:0070181: small ribosomal subunit rRNA binding1.87E-03
26GO:0008649: rRNA methyltransferase activity1.87E-03
27GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.87E-03
28GO:0070180: large ribosomal subunit rRNA binding1.87E-03
29GO:0015266: protein channel activity2.10E-03
30GO:0004550: nucleoside diphosphate kinase activity2.70E-03
31GO:0047627: adenylylsulfatase activity2.70E-03
32GO:0070628: proteasome binding3.64E-03
33GO:0010011: auxin binding3.64E-03
34GO:0046923: ER retention sequence binding3.64E-03
35GO:0005275: amine transmembrane transporter activity4.67E-03
36GO:0031386: protein tag4.67E-03
37GO:0031593: polyubiquitin binding5.79E-03
38GO:0031177: phosphopantetheine binding5.79E-03
39GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.79E-03
40GO:0000035: acyl binding6.99E-03
41GO:0051920: peroxiredoxin activity6.99E-03
42GO:0004872: receptor activity7.59E-03
43GO:0042162: telomeric DNA binding8.28E-03
44GO:0016209: antioxidant activity9.64E-03
45GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.64E-03
46GO:0051082: unfolded protein binding1.09E-02
47GO:0001055: RNA polymerase II activity1.42E-02
48GO:0004129: cytochrome-c oxidase activity1.75E-02
49GO:0008794: arsenate reductase (glutaredoxin) activity1.75E-02
50GO:0008515: sucrose transmembrane transporter activity1.75E-02
51GO:0001054: RNA polymerase I activity1.75E-02
52GO:0001056: RNA polymerase III activity1.93E-02
53GO:0031072: heat shock protein binding2.12E-02
54GO:0051119: sugar transmembrane transporter activity2.50E-02
55GO:0003743: translation initiation factor activity2.67E-02
56GO:0051536: iron-sulfur cluster binding2.91E-02
57GO:0043130: ubiquitin binding2.91E-02
58GO:0043424: protein histidine kinase binding3.12E-02
59GO:0004298: threonine-type endopeptidase activity3.34E-02
60GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.42E-02
61GO:0008233: peptidase activity4.82E-02
RankGO TermAdjusted P value
1GO:0072589: box H/ACA scaRNP complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005675: holo TFIIH complex0.00E+00
4GO:0090661: box H/ACA telomerase RNP complex0.00E+00
5GO:0005840: ribosome5.47E-141
6GO:0022625: cytosolic large ribosomal subunit5.21E-123
7GO:0022626: cytosolic ribosome3.25E-121
8GO:0022627: cytosolic small ribosomal subunit9.06E-80
9GO:0005730: nucleolus2.04E-42
10GO:0005737: cytoplasm3.29E-40
11GO:0005829: cytosol9.70E-37
12GO:0009506: plasmodesma1.32E-24
13GO:0015934: large ribosomal subunit7.15E-20
14GO:0005774: vacuolar membrane2.34E-17
15GO:0016020: membrane6.13E-14
16GO:0015935: small ribosomal subunit1.29E-11
17GO:0005773: vacuole4.25E-10
18GO:0005853: eukaryotic translation elongation factor 1 complex1.43E-07
19GO:0009507: chloroplast4.56E-07
20GO:0005618: cell wall5.38E-07
21GO:0005732: small nucleolar ribonucleoprotein complex8.84E-07
22GO:0005886: plasma membrane3.66E-05
23GO:0005742: mitochondrial outer membrane translocase complex4.50E-05
24GO:0046930: pore complex4.50E-05
25GO:0015030: Cajal body7.99E-05
26GO:0019013: viral nucleocapsid1.89E-04
27GO:0005681: spliceosomal complex3.33E-04
28GO:0005741: mitochondrial outer membrane4.58E-04
29GO:0030686: 90S preribosome5.29E-04
30GO:0005685: U1 snRNP1.01E-03
31GO:0005697: telomerase holoenzyme complex1.14E-03
32GO:0035145: exon-exon junction complex1.14E-03
33GO:0071011: precatalytic spliceosome1.19E-03
34GO:0000502: proteasome complex1.34E-03
35GO:0071013: catalytic step 2 spliceosome1.61E-03
36GO:0005665: DNA-directed RNA polymerase II, core complex1.84E-03
37GO:0034719: SMN-Sm protein complex1.87E-03
38GO:0000439: core TFIIH complex1.87E-03
39GO:0005750: mitochondrial respiratory chain complex III2.37E-03
40GO:1990726: Lsm1-7-Pat1 complex2.70E-03
41GO:0009331: glycerol-3-phosphate dehydrogenase complex2.70E-03
42GO:0031429: box H/ACA snoRNP complex2.70E-03
43GO:0000419: DNA-directed RNA polymerase V complex2.96E-03
44GO:0005758: mitochondrial intermembrane space3.29E-03
45GO:0005682: U5 snRNP3.64E-03
46GO:0005687: U4 snRNP4.67E-03
47GO:0097526: spliceosomal tri-snRNP complex4.67E-03
48GO:0005746: mitochondrial respiratory chain4.67E-03
49GO:0031428: box C/D snoRNP complex5.79E-03
50GO:0005689: U12-type spliceosomal complex6.99E-03
51GO:0016272: prefoldin complex6.99E-03
52GO:0005622: intracellular7.78E-03
53GO:0071004: U2-type prespliceosome9.64E-03
54GO:0045273: respiratory chain complex II9.64E-03
55GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)9.64E-03
56GO:0005688: U6 snRNP9.64E-03
57GO:0046540: U4/U6 x U5 tri-snRNP complex1.11E-02
58GO:0005736: DNA-directed RNA polymerase I complex1.26E-02
59GO:0005666: DNA-directed RNA polymerase III complex1.42E-02
60GO:0005686: U2 snRNP1.58E-02
61GO:0000418: DNA-directed RNA polymerase IV complex1.58E-02
62GO:0005740: mitochondrial envelope1.58E-02
63GO:0008541: proteasome regulatory particle, lid subcomplex1.75E-02
64GO:0048471: perinuclear region of cytoplasm1.75E-02
65GO:0005852: eukaryotic translation initiation factor 3 complex1.75E-02
66GO:0031307: integral component of mitochondrial outer membrane1.93E-02
67GO:0032040: small-subunit processome1.93E-02
68GO:0009508: plastid chromosome2.12E-02
69GO:0005769: early endosome2.70E-02
70GO:0045271: respiratory chain complex I3.12E-02
71GO:0070469: respiratory chain3.12E-02
72GO:0005839: proteasome core complex3.34E-02
73GO:0009536: plastid3.93E-02
74GO:0005747: mitochondrial respiratory chain complex I4.17E-02
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Gene type



Gene DE type