GO Enrichment Analysis of Co-expressed Genes with
AT3G52580
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 2 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 3 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 4 | GO:0032049: cardiolipin biosynthetic process | 0.00E+00 |
| 5 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 6 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 7 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 8 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 9 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 10 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 11 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 12 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 13 | GO:0006412: translation | 2.39E-145 |
| 14 | GO:0042254: ribosome biogenesis | 1.77E-65 |
| 15 | GO:0000027: ribosomal large subunit assembly | 3.76E-15 |
| 16 | GO:0006626: protein targeting to mitochondrion | 4.12E-08 |
| 17 | GO:0000028: ribosomal small subunit assembly | 1.48E-07 |
| 18 | GO:0009955: adaxial/abaxial pattern specification | 5.00E-06 |
| 19 | GO:0009735: response to cytokinin | 1.91E-05 |
| 20 | GO:1902626: assembly of large subunit precursor of preribosome | 1.99E-05 |
| 21 | GO:0002181: cytoplasmic translation | 1.99E-05 |
| 22 | GO:0010162: seed dormancy process | 4.11E-05 |
| 23 | GO:0006364: rRNA processing | 6.99E-05 |
| 24 | GO:0031167: rRNA methylation | 1.22E-04 |
| 25 | GO:0000398: mRNA splicing, via spliceosome | 1.98E-04 |
| 26 | GO:0032365: intracellular lipid transport | 3.55E-04 |
| 27 | GO:0006407: rRNA export from nucleus | 3.55E-04 |
| 28 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 3.55E-04 |
| 29 | GO:0031120: snRNA pseudouridine synthesis | 3.55E-04 |
| 30 | GO:0031118: rRNA pseudouridine synthesis | 3.55E-04 |
| 31 | GO:0015801: aromatic amino acid transport | 3.55E-04 |
| 32 | GO:0030490: maturation of SSU-rRNA | 3.55E-04 |
| 33 | GO:0006434: seryl-tRNA aminoacylation | 3.55E-04 |
| 34 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.55E-04 |
| 35 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.55E-04 |
| 36 | GO:0001510: RNA methylation | 4.76E-04 |
| 37 | GO:0000387: spliceosomal snRNP assembly | 6.73E-04 |
| 38 | GO:0045859: regulation of protein kinase activity | 7.72E-04 |
| 39 | GO:0045905: positive regulation of translational termination | 7.72E-04 |
| 40 | GO:0045901: positive regulation of translational elongation | 7.72E-04 |
| 41 | GO:0048569: post-embryonic animal organ development | 7.72E-04 |
| 42 | GO:0043981: histone H4-K5 acetylation | 7.72E-04 |
| 43 | GO:0006452: translational frameshifting | 7.72E-04 |
| 44 | GO:0009967: positive regulation of signal transduction | 7.72E-04 |
| 45 | GO:0006820: anion transport | 1.03E-03 |
| 46 | GO:0009150: purine ribonucleotide metabolic process | 1.25E-03 |
| 47 | GO:0010476: gibberellin mediated signaling pathway | 1.25E-03 |
| 48 | GO:0042256: mature ribosome assembly | 1.25E-03 |
| 49 | GO:0007004: telomere maintenance via telomerase | 1.80E-03 |
| 50 | GO:0070301: cellular response to hydrogen peroxide | 1.80E-03 |
| 51 | GO:0006241: CTP biosynthetic process | 1.80E-03 |
| 52 | GO:0006165: nucleoside diphosphate phosphorylation | 1.80E-03 |
| 53 | GO:0006228: UTP biosynthetic process | 1.80E-03 |
| 54 | GO:0006164: purine nucleotide biosynthetic process | 1.80E-03 |
| 55 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.82E-03 |
| 56 | GO:0008283: cell proliferation | 2.21E-03 |
| 57 | GO:0007005: mitochondrion organization | 2.41E-03 |
| 58 | GO:0042274: ribosomal small subunit biogenesis | 2.42E-03 |
| 59 | GO:0006183: GTP biosynthetic process | 2.42E-03 |
| 60 | GO:0009294: DNA mediated transformation | 2.63E-03 |
| 61 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 3.09E-03 |
| 62 | GO:1902183: regulation of shoot apical meristem development | 3.09E-03 |
| 63 | GO:0008033: tRNA processing | 3.34E-03 |
| 64 | GO:0045040: protein import into mitochondrial outer membrane | 3.82E-03 |
| 65 | GO:0016070: RNA metabolic process | 3.82E-03 |
| 66 | GO:0000470: maturation of LSU-rRNA | 3.82E-03 |
| 67 | GO:0006635: fatty acid beta-oxidation | 4.45E-03 |
| 68 | GO:0006458: 'de novo' protein folding | 4.60E-03 |
| 69 | GO:0016444: somatic cell DNA recombination | 4.60E-03 |
| 70 | GO:0001522: pseudouridine synthesis | 6.32E-03 |
| 71 | GO:0001558: regulation of cell growth | 7.25E-03 |
| 72 | GO:0043562: cellular response to nitrogen levels | 7.25E-03 |
| 73 | GO:0006189: 'de novo' IMP biosynthetic process | 8.22E-03 |
| 74 | GO:0015780: nucleotide-sugar transport | 8.22E-03 |
| 75 | GO:0098656: anion transmembrane transport | 8.22E-03 |
| 76 | GO:0006413: translational initiation | 9.32E-03 |
| 77 | GO:0030422: production of siRNA involved in RNA interference | 1.03E-02 |
| 78 | GO:0006879: cellular iron ion homeostasis | 1.14E-02 |
| 79 | GO:0010015: root morphogenesis | 1.14E-02 |
| 80 | GO:0006913: nucleocytoplasmic transport | 1.14E-02 |
| 81 | GO:0006790: sulfur compound metabolic process | 1.26E-02 |
| 82 | GO:0012501: programmed cell death | 1.26E-02 |
| 83 | GO:0015031: protein transport | 1.35E-02 |
| 84 | GO:2000028: regulation of photoperiodism, flowering | 1.38E-02 |
| 85 | GO:0010102: lateral root morphogenesis | 1.38E-02 |
| 86 | GO:0006414: translational elongation | 1.48E-02 |
| 87 | GO:0006446: regulation of translational initiation | 1.50E-02 |
| 88 | GO:0048467: gynoecium development | 1.50E-02 |
| 89 | GO:0009644: response to high light intensity | 1.50E-02 |
| 90 | GO:0009965: leaf morphogenesis | 1.55E-02 |
| 91 | GO:0030150: protein import into mitochondrial matrix | 1.89E-02 |
| 92 | GO:0051302: regulation of cell division | 2.03E-02 |
| 93 | GO:0003333: amino acid transmembrane transport | 2.17E-02 |
| 94 | GO:0006334: nucleosome assembly | 2.17E-02 |
| 95 | GO:0061077: chaperone-mediated protein folding | 2.17E-02 |
| 96 | GO:0016226: iron-sulfur cluster assembly | 2.31E-02 |
| 97 | GO:0040007: growth | 2.46E-02 |
| 98 | GO:0071215: cellular response to abscisic acid stimulus | 2.46E-02 |
| 99 | GO:0016569: covalent chromatin modification | 2.51E-02 |
| 100 | GO:0010584: pollen exine formation | 2.61E-02 |
| 101 | GO:0000413: protein peptidyl-prolyl isomerization | 2.92E-02 |
| 102 | GO:0010197: polar nucleus fusion | 3.08E-02 |
| 103 | GO:0009749: response to glucose | 3.41E-02 |
| 104 | GO:0008654: phospholipid biosynthetic process | 3.41E-02 |
| 105 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.58E-02 |
| 106 | GO:0009845: seed germination | 3.60E-02 |
| 107 | GO:0009793: embryo development ending in seed dormancy | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0008808: cardiolipin synthase activity | 0.00E+00 |
| 4 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 5 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 2.65E-173 |
| 7 | GO:0003729: mRNA binding | 2.00E-30 |
| 8 | GO:0019843: rRNA binding | 1.93E-14 |
| 9 | GO:0003723: RNA binding | 8.31E-07 |
| 10 | GO:0030515: snoRNA binding | 8.00E-06 |
| 11 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.07E-05 |
| 12 | GO:0015288: porin activity | 1.20E-05 |
| 13 | GO:0003746: translation elongation factor activity | 1.94E-05 |
| 14 | GO:0008649: rRNA methyltransferase activity | 1.99E-05 |
| 15 | GO:0008097: 5S rRNA binding | 4.39E-05 |
| 16 | GO:0004407: histone deacetylase activity | 1.57E-04 |
| 17 | GO:0005080: protein kinase C binding | 3.55E-04 |
| 18 | GO:0035614: snRNA stem-loop binding | 3.55E-04 |
| 19 | GO:0004828: serine-tRNA ligase activity | 3.55E-04 |
| 20 | GO:0004679: AMP-activated protein kinase activity | 3.55E-04 |
| 21 | GO:0043022: ribosome binding | 3.89E-04 |
| 22 | GO:0008308: voltage-gated anion channel activity | 4.76E-04 |
| 23 | GO:0001055: RNA polymerase II activity | 6.73E-04 |
| 24 | GO:0030619: U1 snRNA binding | 7.72E-04 |
| 25 | GO:0036455: iron-sulfur transferase activity | 7.72E-04 |
| 26 | GO:0015173: aromatic amino acid transmembrane transporter activity | 7.72E-04 |
| 27 | GO:0070034: telomerase RNA binding | 7.72E-04 |
| 28 | GO:0032934: sterol binding | 7.72E-04 |
| 29 | GO:0030572: phosphatidyltransferase activity | 7.72E-04 |
| 30 | GO:0005078: MAP-kinase scaffold activity | 7.72E-04 |
| 31 | GO:0001054: RNA polymerase I activity | 9.04E-04 |
| 32 | GO:0044183: protein binding involved in protein folding | 9.04E-04 |
| 33 | GO:0001056: RNA polymerase III activity | 1.03E-03 |
| 34 | GO:0032947: protein complex scaffold | 1.25E-03 |
| 35 | GO:0004550: nucleoside diphosphate kinase activity | 1.80E-03 |
| 36 | GO:0047627: adenylylsulfatase activity | 1.80E-03 |
| 37 | GO:0005275: amine transmembrane transporter activity | 3.09E-03 |
| 38 | GO:0008198: ferrous iron binding | 3.09E-03 |
| 39 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 3.82E-03 |
| 40 | GO:0019887: protein kinase regulator activity | 4.60E-03 |
| 41 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 5.44E-03 |
| 42 | GO:0008235: metalloexopeptidase activity | 5.44E-03 |
| 43 | GO:0015266: protein channel activity | 1.38E-02 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.87E-02 |
| 45 | GO:0005216: ion channel activity | 2.03E-02 |
| 46 | GO:0051082: unfolded protein binding | 2.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 3 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 4 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 2.02E-125 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 8.56E-115 |
| 7 | GO:0022626: cytosolic ribosome | 2.21E-101 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 1.92E-67 |
| 9 | GO:0005730: nucleolus | 7.44E-39 |
| 10 | GO:0005737: cytoplasm | 1.67E-36 |
| 11 | GO:0005829: cytosol | 4.78E-33 |
| 12 | GO:0009506: plasmodesma | 7.41E-23 |
| 13 | GO:0015934: large ribosomal subunit | 3.83E-18 |
| 14 | GO:0005774: vacuolar membrane | 3.76E-13 |
| 15 | GO:0015935: small ribosomal subunit | 1.06E-12 |
| 16 | GO:0016020: membrane | 1.16E-10 |
| 17 | GO:0005773: vacuole | 1.92E-10 |
| 18 | GO:0005618: cell wall | 3.96E-09 |
| 19 | GO:0015030: Cajal body | 6.07E-07 |
| 20 | GO:0046930: pore complex | 1.72E-05 |
| 21 | GO:0005742: mitochondrial outer membrane translocase complex | 1.72E-05 |
| 22 | GO:0005853: eukaryotic translation elongation factor 1 complex | 1.99E-05 |
| 23 | GO:0009507: chloroplast | 3.01E-05 |
| 24 | GO:0019013: viral nucleocapsid | 7.95E-05 |
| 25 | GO:0005886: plasma membrane | 1.09E-04 |
| 26 | GO:0005758: mitochondrial intermembrane space | 1.57E-04 |
| 27 | GO:0031428: box C/D snoRNP complex | 1.76E-04 |
| 28 | GO:0005741: mitochondrial outer membrane | 2.07E-04 |
| 29 | GO:0030686: 90S preribosome | 3.55E-04 |
| 30 | GO:0005736: DNA-directed RNA polymerase I complex | 5.70E-04 |
| 31 | GO:0005685: U1 snRNP | 5.70E-04 |
| 32 | GO:0005743: mitochondrial inner membrane | 5.88E-04 |
| 33 | GO:0005666: DNA-directed RNA polymerase III complex | 6.73E-04 |
| 34 | GO:0005681: spliceosomal complex | 7.02E-04 |
| 35 | GO:0000418: DNA-directed RNA polymerase IV complex | 7.85E-04 |
| 36 | GO:0032040: small-subunit processome | 1.03E-03 |
| 37 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.03E-03 |
| 38 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.06E-03 |
| 39 | GO:0034719: SMN-Sm protein complex | 1.25E-03 |
| 40 | GO:0031429: box H/ACA snoRNP complex | 1.80E-03 |
| 41 | GO:0005682: U5 snRNP | 2.42E-03 |
| 42 | GO:0005687: U4 snRNP | 3.09E-03 |
| 43 | GO:0097526: spliceosomal tri-snRNP complex | 3.09E-03 |
| 44 | GO:0005689: U12-type spliceosomal complex | 4.60E-03 |
| 45 | GO:0016272: prefoldin complex | 4.60E-03 |
| 46 | GO:0031359: integral component of chloroplast outer membrane | 5.44E-03 |
| 47 | GO:0071004: U2-type prespliceosome | 6.32E-03 |
| 48 | GO:0005688: U6 snRNP | 6.32E-03 |
| 49 | GO:0030529: intracellular ribonucleoprotein complex | 6.44E-03 |
| 50 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 7.25E-03 |
| 51 | GO:0071011: precatalytic spliceosome | 9.24E-03 |
| 52 | GO:0005686: U2 snRNP | 1.03E-02 |
| 53 | GO:0071013: catalytic step 2 spliceosome | 1.14E-02 |
| 54 | GO:0048471: perinuclear region of cytoplasm | 1.14E-02 |
| 55 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.14E-02 |
| 56 | GO:0000419: DNA-directed RNA polymerase V complex | 1.76E-02 |
| 57 | GO:0005622: intracellular | 1.99E-02 |
| 58 | GO:0005747: mitochondrial respiratory chain complex I | 2.28E-02 |
| 59 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.61E-02 |
| 60 | GO:0009706: chloroplast inner membrane | 2.66E-02 |
| 61 | GO:0016592: mediator complex | 3.75E-02 |