GO Enrichment Analysis of Co-expressed Genes with
AT3G52230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901965: endoplasmic reticulum to chloroplast transport | 0.00E+00 |
| 2 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0010190: cytochrome b6f complex assembly | 2.15E-05 |
| 5 | GO:1990052: ER to chloroplast lipid transport | 9.69E-05 |
| 6 | GO:0071806: protein transmembrane transport | 9.69E-05 |
| 7 | GO:0042371: vitamin K biosynthetic process | 9.69E-05 |
| 8 | GO:0071454: cellular response to anoxia | 9.69E-05 |
| 9 | GO:0043686: co-translational protein modification | 9.69E-05 |
| 10 | GO:0071461: cellular response to redox state | 9.69E-05 |
| 11 | GO:0033388: putrescine biosynthetic process from arginine | 9.69E-05 |
| 12 | GO:0009767: photosynthetic electron transport chain | 1.93E-04 |
| 13 | GO:0009446: putrescine biosynthetic process | 2.28E-04 |
| 14 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 2.28E-04 |
| 15 | GO:0080185: effector dependent induction by symbiont of host immune response | 2.28E-04 |
| 16 | GO:0080005: photosystem stoichiometry adjustment | 2.28E-04 |
| 17 | GO:0048314: embryo sac morphogenesis | 2.28E-04 |
| 18 | GO:0009658: chloroplast organization | 2.46E-04 |
| 19 | GO:0009150: purine ribonucleotide metabolic process | 3.80E-04 |
| 20 | GO:0006696: ergosterol biosynthetic process | 3.80E-04 |
| 21 | GO:0016226: iron-sulfur cluster assembly | 4.10E-04 |
| 22 | GO:0016117: carotenoid biosynthetic process | 5.25E-04 |
| 23 | GO:0050482: arachidonic acid secretion | 5.46E-04 |
| 24 | GO:2001141: regulation of RNA biosynthetic process | 5.46E-04 |
| 25 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.46E-04 |
| 26 | GO:0051016: barbed-end actin filament capping | 5.46E-04 |
| 27 | GO:0042274: ribosomal small subunit biogenesis | 7.26E-04 |
| 28 | GO:0009765: photosynthesis, light harvesting | 7.26E-04 |
| 29 | GO:0031365: N-terminal protein amino acid modification | 9.17E-04 |
| 30 | GO:0035434: copper ion transmembrane transport | 9.17E-04 |
| 31 | GO:0016123: xanthophyll biosynthetic process | 9.17E-04 |
| 32 | GO:0016120: carotene biosynthetic process | 9.17E-04 |
| 33 | GO:0009643: photosynthetic acclimation | 1.12E-03 |
| 34 | GO:0010019: chloroplast-nucleus signaling pathway | 1.34E-03 |
| 35 | GO:0017148: negative regulation of translation | 1.34E-03 |
| 36 | GO:1900056: negative regulation of leaf senescence | 1.57E-03 |
| 37 | GO:0006605: protein targeting | 1.81E-03 |
| 38 | GO:0006644: phospholipid metabolic process | 1.81E-03 |
| 39 | GO:0048564: photosystem I assembly | 1.81E-03 |
| 40 | GO:0032544: plastid translation | 2.07E-03 |
| 41 | GO:0071482: cellular response to light stimulus | 2.07E-03 |
| 42 | GO:0009744: response to sucrose | 2.21E-03 |
| 43 | GO:0000373: Group II intron splicing | 2.33E-03 |
| 44 | GO:1900426: positive regulation of defense response to bacterium | 2.61E-03 |
| 45 | GO:0009098: leucine biosynthetic process | 2.61E-03 |
| 46 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.61E-03 |
| 47 | GO:0045036: protein targeting to chloroplast | 2.90E-03 |
| 48 | GO:0006352: DNA-templated transcription, initiation | 3.20E-03 |
| 49 | GO:0043085: positive regulation of catalytic activity | 3.20E-03 |
| 50 | GO:0006790: sulfur compound metabolic process | 3.50E-03 |
| 51 | GO:0009725: response to hormone | 3.82E-03 |
| 52 | GO:0006807: nitrogen compound metabolic process | 3.82E-03 |
| 53 | GO:0034605: cellular response to heat | 4.15E-03 |
| 54 | GO:0019253: reductive pentose-phosphate cycle | 4.15E-03 |
| 55 | GO:0010207: photosystem II assembly | 4.15E-03 |
| 56 | GO:0090351: seedling development | 4.49E-03 |
| 57 | GO:0006071: glycerol metabolic process | 4.83E-03 |
| 58 | GO:0006825: copper ion transport | 5.55E-03 |
| 59 | GO:0007017: microtubule-based process | 5.55E-03 |
| 60 | GO:0051321: meiotic cell cycle | 5.93E-03 |
| 61 | GO:0070417: cellular response to cold | 7.51E-03 |
| 62 | GO:0009416: response to light stimulus | 7.61E-03 |
| 63 | GO:0009791: post-embryonic development | 9.23E-03 |
| 64 | GO:0019761: glucosinolate biosynthetic process | 1.01E-02 |
| 65 | GO:0030163: protein catabolic process | 1.06E-02 |
| 66 | GO:0009816: defense response to bacterium, incompatible interaction | 1.30E-02 |
| 67 | GO:0055114: oxidation-reduction process | 1.40E-02 |
| 68 | GO:0015995: chlorophyll biosynthetic process | 1.41E-02 |
| 69 | GO:0018298: protein-chromophore linkage | 1.51E-02 |
| 70 | GO:0006811: ion transport | 1.62E-02 |
| 71 | GO:0007568: aging | 1.68E-02 |
| 72 | GO:0009910: negative regulation of flower development | 1.68E-02 |
| 73 | GO:0000724: double-strand break repair via homologous recombination | 1.73E-02 |
| 74 | GO:0009853: photorespiration | 1.79E-02 |
| 75 | GO:0009644: response to high light intensity | 2.27E-02 |
| 76 | GO:0031347: regulation of defense response | 2.46E-02 |
| 77 | GO:0006260: DNA replication | 2.46E-02 |
| 78 | GO:0006364: rRNA processing | 2.65E-02 |
| 79 | GO:0006810: transport | 3.02E-02 |
| 80 | GO:0009553: embryo sac development | 3.33E-02 |
| 81 | GO:0006413: translational initiation | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0030941: chloroplast targeting sequence binding | 9.69E-05 |
| 7 | GO:0046906: tetrapyrrole binding | 9.69E-05 |
| 8 | GO:0042586: peptide deformylase activity | 9.69E-05 |
| 9 | GO:0051996: squalene synthase activity | 9.69E-05 |
| 10 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.28E-04 |
| 11 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 2.28E-04 |
| 12 | GO:0004047: aminomethyltransferase activity | 2.28E-04 |
| 13 | GO:0004180: carboxypeptidase activity | 3.80E-04 |
| 14 | GO:0032947: protein complex scaffold | 3.80E-04 |
| 15 | GO:0004848: ureidoglycolate hydrolase activity | 3.80E-04 |
| 16 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.80E-04 |
| 17 | GO:0047627: adenylylsulfatase activity | 5.46E-04 |
| 18 | GO:0043023: ribosomal large subunit binding | 5.46E-04 |
| 19 | GO:0016851: magnesium chelatase activity | 5.46E-04 |
| 20 | GO:0008080: N-acetyltransferase activity | 6.09E-04 |
| 21 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 7.26E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 7.26E-04 |
| 23 | GO:0005319: lipid transporter activity | 7.26E-04 |
| 24 | GO:0051861: glycolipid binding | 7.26E-04 |
| 25 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.26E-04 |
| 26 | GO:0016987: sigma factor activity | 7.26E-04 |
| 27 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 7.26E-04 |
| 28 | GO:0048038: quinone binding | 7.47E-04 |
| 29 | GO:0004623: phospholipase A2 activity | 9.17E-04 |
| 30 | GO:0019899: enzyme binding | 1.57E-03 |
| 31 | GO:0016491: oxidoreductase activity | 1.59E-03 |
| 32 | GO:0005375: copper ion transmembrane transporter activity | 2.07E-03 |
| 33 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.33E-03 |
| 34 | GO:0031072: heat shock protein binding | 3.82E-03 |
| 35 | GO:0003887: DNA-directed DNA polymerase activity | 4.83E-03 |
| 36 | GO:0051536: iron-sulfur cluster binding | 5.19E-03 |
| 37 | GO:0004176: ATP-dependent peptidase activity | 5.93E-03 |
| 38 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 39 | GO:0004872: receptor activity | 9.23E-03 |
| 40 | GO:0008483: transaminase activity | 1.16E-02 |
| 41 | GO:0008237: metallopeptidase activity | 1.16E-02 |
| 42 | GO:0016168: chlorophyll binding | 1.30E-02 |
| 43 | GO:0008236: serine-type peptidase activity | 1.46E-02 |
| 44 | GO:0004222: metalloendopeptidase activity | 1.62E-02 |
| 45 | GO:0050897: cobalt ion binding | 1.68E-02 |
| 46 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.27E-02 |
| 47 | GO:0005198: structural molecule activity | 2.33E-02 |
| 48 | GO:0051287: NAD binding | 2.46E-02 |
| 49 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.65E-02 |
| 50 | GO:0003777: microtubule motor activity | 2.85E-02 |
| 51 | GO:0031625: ubiquitin protein ligase binding | 2.85E-02 |
| 52 | GO:0003779: actin binding | 3.33E-02 |
| 53 | GO:0051082: unfolded protein binding | 3.41E-02 |
| 54 | GO:0016746: transferase activity, transferring acyl groups | 3.48E-02 |
| 55 | GO:0019843: rRNA binding | 4.00E-02 |
| 56 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.01E-15 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 7.51E-07 |
| 3 | GO:0009570: chloroplast stroma | 6.24E-05 |
| 4 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.49E-05 |
| 5 | GO:0008290: F-actin capping protein complex | 2.28E-04 |
| 6 | GO:0031969: chloroplast membrane | 3.48E-04 |
| 7 | GO:0009528: plastid inner membrane | 3.80E-04 |
| 8 | GO:0030286: dynein complex | 7.26E-04 |
| 9 | GO:0009536: plastid | 1.41E-03 |
| 10 | GO:0031359: integral component of chloroplast outer membrane | 1.57E-03 |
| 11 | GO:0031966: mitochondrial membrane | 2.76E-03 |
| 12 | GO:0005747: mitochondrial respiratory chain complex I | 3.61E-03 |
| 13 | GO:0009508: plastid chromosome | 3.82E-03 |
| 14 | GO:0005875: microtubule associated complex | 4.83E-03 |
| 15 | GO:0043234: protein complex | 4.83E-03 |
| 16 | GO:0045271: respiratory chain complex I | 5.55E-03 |
| 17 | GO:0042651: thylakoid membrane | 5.55E-03 |
| 18 | GO:0009523: photosystem II | 9.23E-03 |
| 19 | GO:0009295: nucleoid | 1.16E-02 |
| 20 | GO:0009941: chloroplast envelope | 1.47E-02 |
| 21 | GO:0009707: chloroplast outer membrane | 1.51E-02 |
| 22 | GO:0010287: plastoglobule | 3.85E-02 |
| 23 | GO:0005623: cell | 4.07E-02 |
| 24 | GO:0005777: peroxisome | 4.19E-02 |
| 25 | GO:0009534: chloroplast thylakoid | 4.40E-02 |
| 26 | GO:0005759: mitochondrial matrix | 4.70E-02 |