Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G51820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
4GO:0016118: carotenoid catabolic process0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
7GO:0070125: mitochondrial translational elongation0.00E+00
8GO:0006429: leucyl-tRNA aminoacylation0.00E+00
9GO:2000505: regulation of energy homeostasis0.00E+00
10GO:0017038: protein import0.00E+00
11GO:0061635: regulation of protein complex stability0.00E+00
12GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
13GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
14GO:0015979: photosynthesis2.60E-27
15GO:0009768: photosynthesis, light harvesting in photosystem I9.37E-16
16GO:0010027: thylakoid membrane organization7.09E-15
17GO:0018298: protein-chromophore linkage3.15E-14
18GO:0010196: nonphotochemical quenching5.53E-13
19GO:0010207: photosystem II assembly2.14E-10
20GO:0009773: photosynthetic electron transport in photosystem I5.80E-09
21GO:0006000: fructose metabolic process2.22E-08
22GO:0009644: response to high light intensity3.15E-08
23GO:0009645: response to low light intensity stimulus3.16E-08
24GO:0010206: photosystem II repair1.55E-07
25GO:0006094: gluconeogenesis9.58E-07
26GO:0019253: reductive pentose-phosphate cycle1.28E-06
27GO:0030388: fructose 1,6-bisphosphate metabolic process3.29E-06
28GO:0009735: response to cytokinin3.77E-06
29GO:0009769: photosynthesis, light harvesting in photosystem II3.90E-06
30GO:0009409: response to cold7.15E-06
31GO:0009658: chloroplast organization7.43E-06
32GO:0032544: plastid translation8.58E-06
33GO:0006002: fructose 6-phosphate metabolic process8.58E-06
34GO:0016117: carotenoid biosynthetic process9.15E-06
35GO:0090391: granum assembly1.18E-05
36GO:0010114: response to red light1.32E-05
37GO:0019252: starch biosynthetic process1.72E-05
38GO:0009416: response to light stimulus3.99E-05
39GO:0006006: glucose metabolic process4.22E-05
40GO:0010021: amylopectin biosynthetic process4.83E-05
41GO:0006546: glycine catabolic process4.83E-05
42GO:0006021: inositol biosynthetic process4.83E-05
43GO:0015995: chlorophyll biosynthetic process5.75E-05
44GO:0042742: defense response to bacterium7.06E-05
45GO:0010236: plastoquinone biosynthetic process7.68E-05
46GO:0016123: xanthophyll biosynthetic process7.68E-05
47GO:0010218: response to far red light8.39E-05
48GO:0042549: photosystem II stabilization1.12E-04
49GO:0055114: oxidation-reduction process1.18E-04
50GO:1901259: chloroplast rRNA processing1.53E-04
51GO:0010189: vitamin E biosynthetic process1.53E-04
52GO:0005978: glycogen biosynthetic process2.55E-04
53GO:0009642: response to light intensity2.55E-04
54GO:0051775: response to redox state2.68E-04
55GO:0080093: regulation of photorespiration2.68E-04
56GO:0043609: regulation of carbon utilization2.68E-04
57GO:0043007: maintenance of rDNA2.68E-04
58GO:0031998: regulation of fatty acid beta-oxidation2.68E-04
59GO:1902458: positive regulation of stomatal opening2.68E-04
60GO:0034337: RNA folding2.68E-04
61GO:0006438: valyl-tRNA aminoacylation2.68E-04
62GO:0006096: glycolytic process3.68E-04
63GO:0006098: pentose-phosphate shunt3.80E-04
64GO:0010205: photoinhibition4.50E-04
65GO:0097054: L-glutamate biosynthetic process5.89E-04
66GO:0006729: tetrahydrobiopterin biosynthetic process5.89E-04
67GO:0016121: carotene catabolic process5.89E-04
68GO:1903426: regulation of reactive oxygen species biosynthetic process5.89E-04
69GO:0035304: regulation of protein dephosphorylation5.89E-04
70GO:0016124: xanthophyll catabolic process5.89E-04
71GO:0019388: galactose catabolic process5.89E-04
72GO:0018119: peptidyl-cysteine S-nitrosylation6.07E-04
73GO:0019684: photosynthesis, light reaction6.07E-04
74GO:0043085: positive regulation of catalytic activity6.07E-04
75GO:0045037: protein import into chloroplast stroma6.94E-04
76GO:0006790: sulfur compound metabolic process6.94E-04
77GO:0005983: starch catabolic process6.94E-04
78GO:0006108: malate metabolic process7.86E-04
79GO:0005986: sucrose biosynthetic process7.86E-04
80GO:0009793: embryo development ending in seed dormancy8.10E-04
81GO:0009637: response to blue light9.53E-04
82GO:0071492: cellular response to UV-A9.55E-04
83GO:0016050: vesicle organization9.55E-04
84GO:0006518: peptide metabolic process9.55E-04
85GO:0046854: phosphatidylinositol phosphorylation9.87E-04
86GO:0006418: tRNA aminoacylation for protein translation1.33E-03
87GO:0009590: detection of gravity1.36E-03
88GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.36E-03
89GO:0006020: inositol metabolic process1.36E-03
90GO:0071484: cellular response to light intensity1.36E-03
91GO:0006107: oxaloacetate metabolic process1.36E-03
92GO:0006537: glutamate biosynthetic process1.36E-03
93GO:0009269: response to desiccation1.46E-03
94GO:0006734: NADH metabolic process1.83E-03
95GO:0010109: regulation of photosynthesis1.83E-03
96GO:0019676: ammonia assimilation cycle1.83E-03
97GO:0015976: carbon utilization1.83E-03
98GO:0071486: cellular response to high light intensity1.83E-03
99GO:0019464: glycine decarboxylation via glycine cleavage system1.83E-03
100GO:0006109: regulation of carbohydrate metabolic process1.83E-03
101GO:0045727: positive regulation of translation1.83E-03
102GO:0030104: water homeostasis1.83E-03
103GO:0015994: chlorophyll metabolic process1.83E-03
104GO:0042254: ribosome biogenesis2.25E-03
105GO:0032543: mitochondrial translation2.33E-03
106GO:0016120: carotene biosynthetic process2.33E-03
107GO:0045038: protein import into chloroplast thylakoid membrane2.33E-03
108GO:0006097: glyoxylate cycle2.33E-03
109GO:0006662: glycerol ether metabolic process2.39E-03
110GO:0010182: sugar mediated signaling pathway2.39E-03
111GO:0006814: sodium ion transport2.56E-03
112GO:0009635: response to herbicide2.88E-03
113GO:0050665: hydrogen peroxide biosynthetic process2.88E-03
114GO:0046855: inositol phosphate dephosphorylation2.88E-03
115GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.88E-03
116GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.88E-03
117GO:0010190: cytochrome b6f complex assembly2.88E-03
118GO:0046686: response to cadmium ion2.91E-03
119GO:0030488: tRNA methylation3.46E-03
120GO:0009854: oxidative photosynthetic carbon pathway3.46E-03
121GO:0009955: adaxial/abaxial pattern specification3.46E-03
122GO:0045454: cell redox homeostasis4.00E-03
123GO:0009772: photosynthetic electron transport in photosystem II4.08E-03
124GO:0071446: cellular response to salicylic acid stimulus4.08E-03
125GO:0006605: protein targeting4.73E-03
126GO:2000070: regulation of response to water deprivation4.73E-03
127GO:0009657: plastid organization5.42E-03
128GO:0017004: cytochrome complex assembly5.42E-03
129GO:2000031: regulation of salicylic acid mediated signaling pathway5.42E-03
130GO:0071482: cellular response to light stimulus5.42E-03
131GO:0015996: chlorophyll catabolic process5.42E-03
132GO:0007186: G-protein coupled receptor signaling pathway5.42E-03
133GO:0009245: lipid A biosynthetic process6.14E-03
134GO:0090333: regulation of stomatal closure6.14E-03
135GO:0006412: translation6.46E-03
136GO:0005982: starch metabolic process6.90E-03
137GO:0034599: cellular response to oxidative stress7.34E-03
138GO:0006099: tricarboxylic acid cycle7.34E-03
139GO:0009688: abscisic acid biosynthetic process7.68E-03
140GO:0048829: root cap development7.68E-03
141GO:0000272: polysaccharide catabolic process8.50E-03
142GO:0006415: translational termination8.50E-03
143GO:0009073: aromatic amino acid family biosynthetic process8.50E-03
144GO:0009744: response to sucrose9.06E-03
145GO:0009767: photosynthetic electron transport chain1.02E-02
146GO:0010628: positive regulation of gene expression1.02E-02
147GO:0005985: sucrose metabolic process1.21E-02
148GO:0006364: rRNA processing1.22E-02
149GO:0006636: unsaturated fatty acid biosynthetic process1.30E-02
150GO:0080167: response to karrikin1.37E-02
151GO:0016114: terpenoid biosynthetic process1.61E-02
152GO:0061077: chaperone-mediated protein folding1.61E-02
153GO:0016226: iron-sulfur cluster assembly1.71E-02
154GO:0071215: cellular response to abscisic acid stimulus1.82E-02
155GO:0009561: megagametogenesis1.94E-02
156GO:0042335: cuticle development2.17E-02
157GO:0042631: cellular response to water deprivation2.17E-02
158GO:0006810: transport2.33E-02
159GO:0009646: response to absence of light2.41E-02
160GO:0008654: phospholipid biosynthetic process2.53E-02
161GO:0009791: post-embryonic development2.53E-02
162GO:0009790: embryo development2.56E-02
163GO:0071554: cell wall organization or biogenesis2.65E-02
164GO:0006633: fatty acid biosynthetic process2.75E-02
165GO:0010090: trichome morphogenesis2.91E-02
166GO:0051607: defense response to virus3.31E-02
167GO:0009627: systemic acquired resistance3.73E-02
168GO:0016311: dephosphorylation4.02E-02
169GO:0009813: flavonoid biosynthetic process4.32E-02
170GO:0009834: plant-type secondary cell wall biogenesis4.47E-02
171GO:0006499: N-terminal protein myristoylation4.47E-02
172GO:0010119: regulation of stomatal movement4.62E-02
173GO:0016051: carbohydrate biosynthetic process4.93E-02
174GO:0009853: photorespiration4.93E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0016166: phytoene dehydrogenase activity0.00E+00
3GO:0004823: leucine-tRNA ligase activity0.00E+00
4GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
5GO:0010355: homogentisate farnesyltransferase activity0.00E+00
6GO:0051738: xanthophyll binding0.00E+00
7GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
8GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
9GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
12GO:0010357: homogentisate solanesyltransferase activity0.00E+00
13GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
14GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
15GO:0045550: geranylgeranyl reductase activity0.00E+00
16GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
17GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
18GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
19GO:0016168: chlorophyll binding1.33E-16
20GO:0031409: pigment binding2.93E-16
21GO:0019843: rRNA binding2.81E-08
22GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity3.29E-06
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.29E-06
24GO:0016851: magnesium chelatase activity2.67E-05
25GO:0008266: poly(U) RNA binding5.12E-05
26GO:0016615: malate dehydrogenase activity1.12E-04
27GO:2001070: starch binding1.12E-04
28GO:0004332: fructose-bisphosphate aldolase activity1.12E-04
29GO:0030060: L-malate dehydrogenase activity1.53E-04
30GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.53E-04
31GO:0004832: valine-tRNA ligase activity2.68E-04
32GO:0045485: omega-6 fatty acid desaturase activity2.68E-04
33GO:0008746: NAD(P)+ transhydrogenase activity2.68E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.68E-04
35GO:0016041: glutamate synthase (ferredoxin) activity2.68E-04
36GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.68E-04
37GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.68E-04
38GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.68E-04
39GO:0050308: sugar-phosphatase activity2.68E-04
40GO:0019203: carbohydrate phosphatase activity2.68E-04
41GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.68E-04
42GO:0010242: oxygen evolving activity2.68E-04
43GO:0071949: FAD binding3.80E-04
44GO:0008047: enzyme activator activity5.26E-04
45GO:0052833: inositol monophosphate 4-phosphatase activity5.89E-04
46GO:0004512: inositol-3-phosphate synthase activity5.89E-04
47GO:0008967: phosphoglycolate phosphatase activity5.89E-04
48GO:0010291: carotene beta-ring hydroxylase activity5.89E-04
49GO:0047746: chlorophyllase activity5.89E-04
50GO:0010297: heteropolysaccharide binding5.89E-04
51GO:0004047: aminomethyltransferase activity5.89E-04
52GO:0052832: inositol monophosphate 3-phosphatase activity5.89E-04
53GO:0033201: alpha-1,4-glucan synthase activity5.89E-04
54GO:0003844: 1,4-alpha-glucan branching enzyme activity5.89E-04
55GO:0004614: phosphoglucomutase activity5.89E-04
56GO:0008934: inositol monophosphate 1-phosphatase activity5.89E-04
57GO:0046872: metal ion binding6.47E-04
58GO:0031072: heat shock protein binding7.86E-04
59GO:0003746: translation elongation factor activity9.53E-04
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.55E-04
61GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups9.55E-04
62GO:0015462: ATPase-coupled protein transmembrane transporter activity9.55E-04
63GO:0004324: ferredoxin-NADP+ reductase activity9.55E-04
64GO:0005504: fatty acid binding9.55E-04
65GO:0043169: cation binding9.55E-04
66GO:0004373: glycogen (starch) synthase activity9.55E-04
67GO:0003913: DNA photolyase activity9.55E-04
68GO:0002161: aminoacyl-tRNA editing activity9.55E-04
69GO:0005528: FK506 binding1.21E-03
70GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.36E-03
71GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.36E-03
72GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.36E-03
73GO:0008508: bile acid:sodium symporter activity1.36E-03
74GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.36E-03
75GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.36E-03
76GO:0004375: glycine dehydrogenase (decarboxylating) activity1.36E-03
77GO:0016149: translation release factor activity, codon specific1.36E-03
78GO:0003735: structural constituent of ribosome1.66E-03
79GO:0022891: substrate-specific transmembrane transporter activity1.74E-03
80GO:0008891: glycolate oxidase activity1.83E-03
81GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.83E-03
82GO:0045430: chalcone isomerase activity1.83E-03
83GO:0009011: starch synthase activity1.83E-03
84GO:0016491: oxidoreductase activity2.01E-03
85GO:0047134: protein-disulfide reductase activity2.05E-03
86GO:0004812: aminoacyl-tRNA ligase activity2.05E-03
87GO:0004040: amidase activity2.33E-03
88GO:0051538: 3 iron, 4 sulfur cluster binding2.33E-03
89GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.33E-03
90GO:0003959: NADPH dehydrogenase activity2.33E-03
91GO:0004791: thioredoxin-disulfide reductase activity2.56E-03
92GO:0042578: phosphoric ester hydrolase activity2.88E-03
93GO:0031177: phosphopantetheine binding2.88E-03
94GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.35E-03
95GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.46E-03
96GO:0004017: adenylate kinase activity3.46E-03
97GO:0000035: acyl binding3.46E-03
98GO:0009881: photoreceptor activity4.08E-03
99GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.11E-03
100GO:0004033: aldo-keto reductase (NADP) activity4.73E-03
101GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.73E-03
102GO:0008173: RNA methyltransferase activity5.42E-03
103GO:0008135: translation factor activity, RNA binding5.42E-03
104GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.14E-03
105GO:0003747: translation release factor activity6.14E-03
106GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.90E-03
107GO:0050661: NADP binding8.01E-03
108GO:0004161: dimethylallyltranstransferase activity8.50E-03
109GO:0000287: magnesium ion binding1.02E-02
110GO:0005315: inorganic phosphate transmembrane transporter activity1.02E-02
111GO:0004089: carbonate dehydratase activity1.02E-02
112GO:0005509: calcium ion binding1.05E-02
113GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.06E-02
114GO:0051287: NAD binding1.10E-02
115GO:0051536: iron-sulfur cluster binding1.40E-02
116GO:0004857: enzyme inhibitor activity1.40E-02
117GO:0016787: hydrolase activity1.64E-02
118GO:0051082: unfolded protein binding1.75E-02
119GO:0015035: protein disulfide oxidoreductase activity1.80E-02
120GO:0008514: organic anion transmembrane transporter activity1.94E-02
121GO:0003756: protein disulfide isomerase activity1.94E-02
122GO:0010181: FMN binding2.41E-02
123GO:0050662: coenzyme binding2.41E-02
124GO:0048038: quinone binding2.65E-02
125GO:0008483: transaminase activity3.18E-02
126GO:0016413: O-acetyltransferase activity3.31E-02
127GO:0004721: phosphoprotein phosphatase activity3.88E-02
128GO:0008236: serine-type peptidase activity4.02E-02
129GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.02E-02
130GO:0015238: drug transmembrane transporter activity4.32E-02
131GO:0004222: metalloendopeptidase activity4.47E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0009783: photosystem II antenna complex0.00E+00
5GO:0009507: chloroplast1.71E-93
6GO:0009534: chloroplast thylakoid1.93E-70
7GO:0009941: chloroplast envelope1.68E-60
8GO:0009535: chloroplast thylakoid membrane1.57E-58
9GO:0009570: chloroplast stroma1.17E-50
10GO:0009579: thylakoid1.88E-45
11GO:0010287: plastoglobule1.90E-22
12GO:0009543: chloroplast thylakoid lumen3.25E-17
13GO:0009522: photosystem I3.76E-16
14GO:0031977: thylakoid lumen5.88E-15
15GO:0030076: light-harvesting complex2.44E-14
16GO:0048046: apoplast5.73E-12
17GO:0030095: chloroplast photosystem II2.14E-10
18GO:0009523: photosystem II2.40E-10
19GO:0009517: PSII associated light-harvesting complex II8.01E-10
20GO:0009654: photosystem II oxygen evolving complex6.82E-08
21GO:0009706: chloroplast inner membrane2.54E-07
22GO:0005840: ribosome2.72E-07
23GO:0019898: extrinsic component of membrane5.59E-07
24GO:0016020: membrane1.18E-06
25GO:0031969: chloroplast membrane1.32E-06
26GO:0010319: stromule1.35E-06
27GO:0042651: thylakoid membrane3.46E-06
28GO:0010007: magnesium chelatase complex1.18E-05
29GO:0055035: plastid thylakoid membrane7.68E-05
30GO:0009501: amyloplast2.55E-04
31GO:0009538: photosystem I reaction center2.55E-04
32GO:0009782: photosystem I antenna complex2.68E-04
33GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.68E-04
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.80E-04
35GO:0043036: starch grain5.89E-04
36GO:0000427: plastid-encoded plastid RNA polymerase complex5.89E-04
37GO:0030093: chloroplast photosystem I5.89E-04
38GO:0005623: cell7.25E-04
39GO:0009508: plastid chromosome7.86E-04
40GO:0009509: chromoplast9.55E-04
41GO:0009528: plastid inner membrane9.55E-04
42GO:0005960: glycine cleavage complex1.36E-03
43GO:0009527: plastid outer membrane1.83E-03
44GO:0009295: nucleoid3.78E-03
45GO:0009533: chloroplast stromal thylakoid4.08E-03
46GO:0005763: mitochondrial small ribosomal subunit6.14E-03
47GO:0016021: integral component of membrane7.41E-03
48GO:0032040: small-subunit processome9.35E-03
49GO:0009532: plastid stroma1.61E-02
50GO:0009536: plastid1.72E-02
51GO:0005759: mitochondrial matrix2.75E-02
52GO:0009707: chloroplast outer membrane4.17E-02
53GO:0022626: cytosolic ribosome4.33E-02
54GO:0015934: large ribosomal subunit4.62E-02
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Gene type



Gene DE type