co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
2	GO:0009946: proximal/distal axis specification	0.00E+00
3	GO:0009249: protein lipoylation	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0009106: lipoate metabolic process	0.00E+00
7	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
8	GO:0071000: response to magnetism	0.00E+00
9	GO:0036172: thiamine salvage	0.00E+00
10	GO:0032928: regulation of superoxide anion generation	0.00E+00
11	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.51E-06
12	GO:0010343: singlet oxygen-mediated programmed cell death	2.51E-06
13	GO:0010117: photoprotection	6.05E-05
14	GO:0046283: anthocyanin-containing compound metabolic process	6.05E-05
15	GO:0034971: histone H3-R17 methylation	2.32E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	2.32E-04
17	GO:0071454: cellular response to anoxia	2.32E-04
18	GO:0034970: histone H3-R2 methylation	2.32E-04
19	GO:0034972: histone H3-R26 methylation	2.32E-04
20	GO:1902265: abscisic acid homeostasis	2.32E-04
21	GO:0022900: electron transport chain	2.55E-04
22	GO:0007154: cell communication	5.15E-04
23	GO:0099402: plant organ development	5.15E-04
24	GO:0009308: amine metabolic process	5.15E-04
25	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.15E-04
26	GO:0016122: xanthophyll metabolic process	5.15E-04
27	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.15E-04
28	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.15E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.15E-04
30	GO:1901529: positive regulation of anion channel activity	5.15E-04
31	GO:0010617: circadian regulation of calcium ion oscillation	5.15E-04
32	GO:0009150: purine ribonucleotide metabolic process	8.37E-04
33	GO:0071492: cellular response to UV-A	8.37E-04
34	GO:0044375: regulation of peroxisome size	8.37E-04
35	GO:0010476: gibberellin mediated signaling pathway	8.37E-04
36	GO:0010325: raffinose family oligosaccharide biosynthetic process	8.37E-04
37	GO:0010338: leaf formation	8.37E-04
38	GO:0031022: nuclear migration along microfilament	8.37E-04
39	GO:1902448: positive regulation of shade avoidance	8.37E-04
40	GO:0006591: ornithine metabolic process	8.37E-04
41	GO:1901672: positive regulation of systemic acquired resistance	8.37E-04
42	GO:1901332: negative regulation of lateral root development	1.19E-03
43	GO:0006624: vacuolar protein processing	1.19E-03
44	GO:0006809: nitric oxide biosynthetic process	1.19E-03
45	GO:0009399: nitrogen fixation	1.19E-03
46	GO:0009647: skotomorphogenesis	1.19E-03
47	GO:0009963: positive regulation of flavonoid biosynthetic process	1.19E-03
48	GO:0009113: purine nucleobase biosynthetic process	1.19E-03
49	GO:0009585: red, far-red light phototransduction	1.47E-03
50	GO:0051603: proteolysis involved in cellular protein catabolic process	1.53E-03
51	GO:1902347: response to strigolactone	1.59E-03
52	GO:0009902: chloroplast relocation	1.59E-03
53	GO:0034613: cellular protein localization	1.59E-03
54	GO:0006542: glutamine biosynthetic process	1.59E-03
55	GO:0071486: cellular response to high light intensity	1.59E-03
56	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.59E-03
57	GO:0009765: photosynthesis, light harvesting	1.59E-03
58	GO:0045088: regulation of innate immune response	1.59E-03
59	GO:0009649: entrainment of circadian clock	1.59E-03
60	GO:0006749: glutathione metabolic process	1.59E-03
61	GO:0006520: cellular amino acid metabolic process	1.95E-03
62	GO:0009229: thiamine diphosphate biosynthetic process	2.03E-03
63	GO:0009107: lipoate biosynthetic process	2.03E-03
64	GO:0000304: response to singlet oxygen	2.03E-03
65	GO:0016120: carotene biosynthetic process	2.03E-03
66	GO:0009117: nucleotide metabolic process	2.50E-03
67	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.50E-03
68	GO:0006555: methionine metabolic process	2.50E-03
69	GO:0045962: positive regulation of development, heterochronic	2.50E-03
70	GO:1901371: regulation of leaf morphogenesis	2.50E-03
71	GO:0060918: auxin transport	2.50E-03
72	GO:0006796: phosphate-containing compound metabolic process	2.50E-03
73	GO:0042793: transcription from plastid promoter	2.50E-03
74	GO:0055114: oxidation-reduction process	2.50E-03
75	GO:0000741: karyogamy	2.50E-03
76	GO:0009228: thiamine biosynthetic process	2.50E-03
77	GO:0009903: chloroplast avoidance movement	3.00E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	3.00E-03
79	GO:0048444: floral organ morphogenesis	3.00E-03
80	GO:0010310: regulation of hydrogen peroxide metabolic process	3.00E-03
81	GO:0019509: L-methionine salvage from methylthioadenosine	3.00E-03
82	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.00E-03
83	GO:0016126: sterol biosynthetic process	3.46E-03
84	GO:0051510: regulation of unidimensional cell growth	3.54E-03
85	GO:0009396: folic acid-containing compound biosynthetic process	3.54E-03
86	GO:0048573: photoperiodism, flowering	4.07E-03
87	GO:0009704: de-etiolation	4.10E-03
88	GO:0016559: peroxisome fission	4.10E-03
89	GO:0010928: regulation of auxin mediated signaling pathway	4.10E-03
90	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.10E-03
91	GO:0007623: circadian rhythm	4.59E-03
92	GO:0010100: negative regulation of photomorphogenesis	4.70E-03
93	GO:0006526: arginine biosynthetic process	4.70E-03
94	GO:0010099: regulation of photomorphogenesis	4.70E-03
95	GO:0019430: removal of superoxide radicals	4.70E-03
96	GO:0009056: catabolic process	5.32E-03
97	GO:0015780: nucleotide-sugar transport	5.32E-03
98	GO:0098656: anion transmembrane transport	5.32E-03
99	GO:0046685: response to arsenic-containing substance	5.32E-03
100	GO:0009637: response to blue light	5.71E-03
101	GO:0008356: asymmetric cell division	5.97E-03
102	GO:1900426: positive regulation of defense response to bacterium	5.97E-03
103	GO:0009638: phototropism	5.97E-03
104	GO:0035999: tetrahydrofolate interconversion	5.97E-03
105	GO:1900865: chloroplast RNA modification	5.97E-03
106	GO:0009688: abscisic acid biosynthetic process	6.65E-03
107	GO:0045036: protein targeting to chloroplast	6.65E-03
108	GO:0009641: shade avoidance	6.65E-03
109	GO:0043085: positive regulation of catalytic activity	7.35E-03
110	GO:0009640: photomorphogenesis	7.36E-03
111	GO:0006508: proteolysis	8.01E-03
112	GO:0006790: sulfur compound metabolic process	8.08E-03
113	GO:0009965: leaf morphogenesis	8.27E-03
114	GO:0050826: response to freezing	8.84E-03
115	GO:0010075: regulation of meristem growth	8.84E-03
116	GO:0009767: photosynthetic electron transport chain	8.84E-03
117	GO:0009785: blue light signaling pathway	8.84E-03
118	GO:0030048: actin filament-based movement	8.84E-03
119	GO:0034605: cellular response to heat	9.62E-03
120	GO:0019253: reductive pentose-phosphate cycle	9.62E-03
121	GO:0007031: peroxisome organization	1.04E-02
122	GO:0000162: tryptophan biosynthetic process	1.13E-02
123	GO:0046777: protein autophosphorylation	1.15E-02
124	GO:2000377: regulation of reactive oxygen species metabolic process	1.21E-02
125	GO:0009944: polarity specification of adaxial/abaxial axis	1.21E-02
126	GO:0019915: lipid storage	1.39E-02
127	GO:0016226: iron-sulfur cluster assembly	1.48E-02
128	GO:0006012: galactose metabolic process	1.57E-02
129	GO:0009693: ethylene biosynthetic process	1.57E-02
130	GO:0032259: methylation	1.64E-02
131	GO:0016117: carotenoid biosynthetic process	1.77E-02
132	GO:0070417: cellular response to cold	1.77E-02
133	GO:0010118: stomatal movement	1.87E-02
134	GO:0010197: polar nucleus fusion	1.97E-02
135	GO:0009958: positive gravitropism	1.97E-02
136	GO:0042752: regulation of circadian rhythm	2.07E-02
137	GO:0009646: response to absence of light	2.07E-02
138	GO:0009851: auxin biosynthetic process	2.18E-02
139	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.29E-02
140	GO:0007264: small GTPase mediated signal transduction	2.40E-02
141	GO:1901657: glycosyl compound metabolic process	2.51E-02
142	GO:0009451: RNA modification	2.51E-02
143	GO:0009739: response to gibberellin	2.75E-02
144	GO:0009615: response to virus	2.98E-02
145	GO:0010029: regulation of seed germination	3.10E-02
146	GO:0042128: nitrate assimilation	3.22E-02
147	GO:0015995: chlorophyll biosynthetic process	3.34E-02
148	GO:0009416: response to light stimulus	3.54E-02
149	GO:0018298: protein-chromophore linkage	3.59E-02
150	GO:0000160: phosphorelay signal transduction system	3.72E-02
151	GO:0010218: response to far red light	3.85E-02
152	GO:0009407: toxin catabolic process	3.85E-02
153	GO:0010043: response to zinc ion	3.98E-02
154	GO:0007568: aging	3.98E-02
155	GO:0010119: regulation of stomatal movement	3.98E-02
156	GO:0048366: leaf development	4.46E-02
157	GO:0080167: response to karrikin	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
6	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
7	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
8	GO:0004848: ureidoglycolate hydrolase activity	9.11E-06
9	GO:0000254: C-4 methylsterol oxidase activity	2.08E-05
10	GO:0030611: arsenate reductase activity	2.32E-04
11	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.32E-04
12	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.32E-04
13	GO:0046480: galactolipid galactosyltransferase activity	2.32E-04
14	GO:0046906: tetrapyrrole binding	2.32E-04
15	GO:0080079: cellobiose glucosidase activity	2.32E-04
16	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.32E-04
17	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	2.32E-04
18	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	2.32E-04
19	GO:0052595: aliphatic-amine oxidase activity	2.32E-04
20	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	2.32E-04
21	GO:0016783: sulfurtransferase activity	2.32E-04
22	GO:0048038: quinone binding	2.37E-04
23	GO:0071949: FAD binding	3.09E-04
24	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.15E-04
25	GO:0017118: lipoyltransferase activity	5.15E-04
26	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.15E-04
27	GO:0010331: gibberellin binding	5.15E-04
28	GO:0016415: octanoyltransferase activity	5.15E-04
29	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.15E-04
30	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.15E-04
31	GO:0004046: aminoacylase activity	5.15E-04
32	GO:0016743: carboxyl- or carbamoyltransferase activity	5.15E-04
33	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.15E-04
34	GO:0004329: formate-tetrahydrofolate ligase activity	5.15E-04
35	GO:0008469: histone-arginine N-methyltransferase activity	8.37E-04
36	GO:0004180: carboxypeptidase activity	8.37E-04
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.37E-04
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.37E-04
39	GO:0019003: GDP binding	8.37E-04
40	GO:0004185: serine-type carboxypeptidase activity	1.01E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	1.12E-03
42	GO:0009882: blue light photoreceptor activity	1.19E-03
43	GO:0047627: adenylylsulfatase activity	1.19E-03
44	GO:0035529: NADH pyrophosphatase activity	1.19E-03
45	GO:0004792: thiosulfate sulfurtransferase activity	1.19E-03
46	GO:0008168: methyltransferase activity	1.51E-03
47	GO:0004834: tryptophan synthase activity	1.59E-03
48	GO:0004356: glutamate-ammonia ligase activity	2.03E-03
49	GO:0004784: superoxide dismutase activity	2.50E-03
50	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.50E-03
51	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.15E-03
52	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.54E-03
53	GO:0004427: inorganic diphosphatase activity	3.54E-03
54	GO:0019899: enzyme binding	3.54E-03
55	GO:0004525: ribonuclease III activity	4.10E-03
56	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.10E-03
57	GO:0004034: aldose 1-epimerase activity	4.10E-03
58	GO:0008236: serine-type peptidase activity	4.28E-03
59	GO:0001055: RNA polymerase II activity	5.97E-03
60	GO:0042802: identical protein binding	6.23E-03
61	GO:0008047: enzyme activator activity	6.65E-03
62	GO:0004860: protein kinase inhibitor activity	7.35E-03
63	GO:0008794: arsenate reductase (glutaredoxin) activity	7.35E-03
64	GO:0008378: galactosyltransferase activity	8.08E-03
65	GO:0005315: inorganic phosphate transmembrane transporter activity	8.84E-03
66	GO:0031072: heat shock protein binding	8.84E-03
67	GO:0008131: primary amine oxidase activity	9.62E-03
68	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.62E-03
69	GO:0004175: endopeptidase activity	9.62E-03
70	GO:0003887: DNA-directed DNA polymerase activity	1.13E-02
71	GO:0004725: protein tyrosine phosphatase activity	1.13E-02
72	GO:0022857: transmembrane transporter activity	1.33E-02
73	GO:0016491: oxidoreductase activity	1.36E-02
74	GO:0004176: ATP-dependent peptidase activity	1.39E-02
75	GO:0042803: protein homodimerization activity	1.40E-02
76	GO:0005507: copper ion binding	1.63E-02
77	GO:0008514: organic anion transmembrane transporter activity	1.67E-02
78	GO:0008080: N-acetyltransferase activity	1.97E-02
79	GO:0016853: isomerase activity	2.07E-02
80	GO:0004197: cysteine-type endopeptidase activity	2.40E-02
81	GO:0004518: nuclease activity	2.40E-02
82	GO:0000156: phosphorelay response regulator activity	2.51E-02
83	GO:0005506: iron ion binding	2.69E-02
84	GO:0008483: transaminase activity	2.74E-02
85	GO:0008237: metallopeptidase activity	2.74E-02
86	GO:0016597: amino acid binding	2.86E-02
87	GO:0016787: hydrolase activity	3.09E-02
88	GO:0016168: chlorophyll binding	3.10E-02
89	GO:0003824: catalytic activity	3.16E-02
90	GO:0008375: acetylglucosaminyltransferase activity	3.22E-02
91	GO:0004806: triglyceride lipase activity	3.34E-02
92	GO:0030247: polysaccharide binding	3.34E-02
93	GO:0046982: protein heterodimerization activity	3.72E-02
94	GO:0004222: metalloendopeptidase activity	3.85E-02
95	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.53E-02
96	GO:0008422: beta-glucosidase activity	4.53E-02
97	GO:0004497: monooxygenase activity	4.69E-02
98	GO:0004364: glutathione transferase activity	4.95E-02
99	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	9.02E-09
3	GO:0000323: lytic vacuole	2.08E-05
4	GO:0005773: vacuole	5.16E-05
5	GO:0000152: nuclear ubiquitin ligase complex	2.32E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.09E-04
7	GO:0016604: nuclear body	3.67E-04
8	GO:0009535: chloroplast thylakoid membrane	4.24E-04
9	GO:0016605: PML body	8.37E-04
10	GO:0042646: plastid nucleoid	1.19E-03
11	GO:0009517: PSII associated light-harvesting complex II	1.59E-03
12	GO:0016591: DNA-directed RNA polymerase II, holoenzyme	2.03E-03
13	GO:0000793: condensed chromosome	2.50E-03
14	GO:0031463: Cul3-RING ubiquitin ligase complex	2.50E-03
15	GO:0009295: nucleoid	3.08E-03
16	GO:0031359: integral component of chloroplast outer membrane	3.54E-03
17	GO:0005779: integral component of peroxisomal membrane	4.70E-03
18	GO:0042644: chloroplast nucleoid	5.32E-03
19	GO:0000418: DNA-directed RNA polymerase IV complex	6.65E-03
20	GO:0009570: chloroplast stroma	6.78E-03
21	GO:0005665: DNA-directed RNA polymerase II, core complex	8.08E-03
22	GO:0009508: plastid chromosome	8.84E-03
23	GO:0005764: lysosome	9.62E-03
24	GO:0031969: chloroplast membrane	1.05E-02
25	GO:0000419: DNA-directed RNA polymerase V complex	1.13E-02
26	GO:0043234: protein complex	1.13E-02
27	GO:0042651: thylakoid membrane	1.30E-02
28	GO:0015935: small ribosomal subunit	1.39E-02
29	GO:0009523: photosystem II	2.18E-02
30	GO:0005778: peroxisomal membrane	2.74E-02
31	GO:0019005: SCF ubiquitin ligase complex	3.59E-02
32	GO:0009707: chloroplast outer membrane	3.59E-02
33	GO:0005777: peroxisome	4.19E-02
34	GO:0009534: chloroplast thylakoid	4.46E-02
35	GO:0005819: spindle	4.53E-02
36	GO:0009941: chloroplast envelope	4.75E-02