co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010336: gibberellic acid homeostasis	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0016576: histone dephosphorylation	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0048856: anatomical structure development	0.00E+00
9	GO:0009661: chromoplast organization	0.00E+00
10	GO:0055114: oxidation-reduction process	5.79E-06
11	GO:0010343: singlet oxygen-mediated programmed cell death	5.84E-06
12	GO:0009658: chloroplast organization	2.92E-05
13	GO:0009902: chloroplast relocation	8.00E-05
14	GO:0016120: carotene biosynthetic process	1.25E-04
15	GO:0010190: cytochrome b6f complex assembly	1.80E-04
16	GO:0006430: lysyl-tRNA aminoacylation	3.60E-04
17	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.60E-04
18	GO:0006835: dicarboxylic acid transport	3.60E-04
19	GO:0006567: threonine catabolic process	3.60E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	3.60E-04
21	GO:1902265: abscisic acid homeostasis	3.60E-04
22	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.60E-04
23	GO:0015798: myo-inositol transport	3.60E-04
24	GO:0072387: flavin adenine dinucleotide metabolic process	3.60E-04
25	GO:0042371: vitamin K biosynthetic process	3.60E-04
26	GO:0071454: cellular response to anoxia	3.60E-04
27	GO:0071461: cellular response to redox state	3.60E-04
28	GO:1900426: positive regulation of defense response to bacterium	6.87E-04
29	GO:0009638: phototropism	6.87E-04
30	GO:0071805: potassium ion transmembrane transport	7.57E-04
31	GO:0080153: negative regulation of reductive pentose-phosphate cycle	7.83E-04
32	GO:0080185: effector dependent induction by symbiont of host immune response	7.83E-04
33	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.83E-04
34	GO:1901529: positive regulation of anion channel activity	7.83E-04
35	GO:0080005: photosystem stoichiometry adjustment	7.83E-04
36	GO:0010617: circadian regulation of calcium ion oscillation	7.83E-04
37	GO:0007154: cell communication	7.83E-04
38	GO:0000256: allantoin catabolic process	7.83E-04
39	GO:0099402: plant organ development	7.83E-04
40	GO:1904143: positive regulation of carotenoid biosynthetic process	7.83E-04
41	GO:0035335: peptidyl-tyrosine dephosphorylation	7.83E-04
42	GO:0045036: protein targeting to chloroplast	8.01E-04
43	GO:0009767: photosynthetic electron transport chain	1.19E-03
44	GO:0031022: nuclear migration along microfilament	1.27E-03
45	GO:1902448: positive regulation of shade avoidance	1.27E-03
46	GO:0010136: ureide catabolic process	1.27E-03
47	GO:1901672: positive regulation of systemic acquired resistance	1.27E-03
48	GO:0009150: purine ribonucleotide metabolic process	1.27E-03
49	GO:0071492: cellular response to UV-A	1.27E-03
50	GO:0071836: nectar secretion	1.27E-03
51	GO:0006696: ergosterol biosynthetic process	1.27E-03
52	GO:0044375: regulation of peroxisome size	1.27E-03
53	GO:0045739: positive regulation of DNA repair	1.27E-03
54	GO:0009637: response to blue light	1.65E-03
55	GO:0010371: regulation of gibberellin biosynthetic process	1.83E-03
56	GO:0046653: tetrahydrofolate metabolic process	1.83E-03
57	GO:0006145: purine nucleobase catabolic process	1.83E-03
58	GO:0010148: transpiration	1.83E-03
59	GO:1901332: negative regulation of lateral root development	1.83E-03
60	GO:0050482: arachidonic acid secretion	1.83E-03
61	GO:0006882: cellular zinc ion homeostasis	1.83E-03
62	GO:2001141: regulation of RNA biosynthetic process	1.83E-03
63	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.83E-03
64	GO:0006508: proteolysis	2.04E-03
65	GO:0070534: protein K63-linked ubiquitination	2.45E-03
66	GO:0015743: malate transport	2.45E-03
67	GO:0006545: glycine biosynthetic process	2.45E-03
68	GO:0071486: cellular response to high light intensity	2.45E-03
69	GO:0042274: ribosomal small subunit biogenesis	2.45E-03
70	GO:0009765: photosynthesis, light harvesting	2.45E-03
71	GO:0006552: leucine catabolic process	2.45E-03
72	GO:1902347: response to strigolactone	2.45E-03
73	GO:0034613: cellular protein localization	2.45E-03
74	GO:0010021: amylopectin biosynthetic process	2.45E-03
75	GO:0000304: response to singlet oxygen	3.14E-03
76	GO:0071423: malate transmembrane transport	3.14E-03
77	GO:0010117: photoprotection	3.14E-03
78	GO:0046283: anthocyanin-containing compound metabolic process	3.14E-03
79	GO:0010236: plastoquinone biosynthetic process	3.14E-03
80	GO:0016117: carotenoid biosynthetic process	3.16E-03
81	GO:0010118: stomatal movement	3.42E-03
82	GO:0006520: cellular amino acid metabolic process	3.68E-03
83	GO:0006555: methionine metabolic process	3.88E-03
84	GO:0060918: auxin transport	3.88E-03
85	GO:1901371: regulation of leaf morphogenesis	3.88E-03
86	GO:0006301: postreplication repair	3.88E-03
87	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.88E-03
88	GO:0010310: regulation of hydrogen peroxide metabolic process	4.67E-03
89	GO:0019509: L-methionine salvage from methylthioadenosine	4.67E-03
90	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.67E-03
91	GO:0009903: chloroplast avoidance movement	4.67E-03
92	GO:0010189: vitamin E biosynthetic process	4.67E-03
93	GO:0010019: chloroplast-nucleus signaling pathway	4.67E-03
94	GO:1900056: negative regulation of leaf senescence	5.52E-03
95	GO:0030026: cellular manganese ion homeostasis	5.52E-03
96	GO:0051510: regulation of unidimensional cell growth	5.52E-03
97	GO:0010038: response to metal ion	5.52E-03
98	GO:0050790: regulation of catalytic activity	5.52E-03
99	GO:0006102: isocitrate metabolic process	6.41E-03
100	GO:0016559: peroxisome fission	6.41E-03
101	GO:0006644: phospholipid metabolic process	6.41E-03
102	GO:0048564: photosystem I assembly	6.41E-03
103	GO:0030091: protein repair	6.41E-03
104	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.41E-03
105	GO:0009704: de-etiolation	6.41E-03
106	GO:0050821: protein stabilization	6.41E-03
107	GO:0071482: cellular response to light stimulus	7.36E-03
108	GO:0022900: electron transport chain	7.36E-03
109	GO:0015995: chlorophyll biosynthetic process	7.76E-03
110	GO:0010411: xyloglucan metabolic process	7.76E-03
111	GO:0015780: nucleotide-sugar transport	8.35E-03
112	GO:0046916: cellular transition metal ion homeostasis	8.35E-03
113	GO:0018298: protein-chromophore linkage	8.60E-03
114	GO:0051453: regulation of intracellular pH	9.38E-03
115	GO:0010380: regulation of chlorophyll biosynthetic process	9.38E-03
116	GO:0055062: phosphate ion homeostasis	1.05E-02
117	GO:0051555: flavonol biosynthetic process	1.05E-02
118	GO:0007623: circadian rhythm	1.05E-02
119	GO:0006816: calcium ion transport	1.16E-02
120	GO:0043085: positive regulation of catalytic activity	1.16E-02
121	GO:0008285: negative regulation of cell proliferation	1.16E-02
122	GO:1903507: negative regulation of nucleic acid-templated transcription	1.16E-02
123	GO:0006352: DNA-templated transcription, initiation	1.16E-02
124	GO:0016485: protein processing	1.16E-02
125	GO:0006790: sulfur compound metabolic process	1.28E-02
126	GO:0010075: regulation of meristem growth	1.40E-02
127	GO:0005986: sucrose biosynthetic process	1.40E-02
128	GO:0030048: actin filament-based movement	1.40E-02
129	GO:0009785: blue light signaling pathway	1.40E-02
130	GO:0050826: response to freezing	1.40E-02
131	GO:0009640: photomorphogenesis	1.41E-02
132	GO:0042546: cell wall biogenesis	1.47E-02
133	GO:0034605: cellular response to heat	1.52E-02
134	GO:0006541: glutamine metabolic process	1.52E-02
135	GO:0010207: photosystem II assembly	1.52E-02
136	GO:0019253: reductive pentose-phosphate cycle	1.52E-02
137	GO:0007031: peroxisome organization	1.65E-02
138	GO:0006071: glycerol metabolic process	1.78E-02
139	GO:0006813: potassium ion transport	1.91E-02
140	GO:0006289: nucleotide-excision repair	1.92E-02
141	GO:2000377: regulation of reactive oxygen species metabolic process	1.92E-02
142	GO:0051603: proteolysis involved in cellular protein catabolic process	1.98E-02
143	GO:0008299: isoprenoid biosynthetic process	2.06E-02
144	GO:0006418: tRNA aminoacylation for protein translation	2.06E-02
145	GO:0007017: microtubule-based process	2.06E-02
146	GO:0010073: meristem maintenance	2.06E-02
147	GO:0031408: oxylipin biosynthetic process	2.20E-02
148	GO:0006366: transcription from RNA polymerase II promoter	2.20E-02
149	GO:0016998: cell wall macromolecule catabolic process	2.20E-02
150	GO:0016226: iron-sulfur cluster assembly	2.35E-02
151	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.35E-02
152	GO:0010227: floral organ abscission	2.50E-02
153	GO:0009693: ethylene biosynthetic process	2.50E-02
154	GO:0046777: protein autophosphorylation	2.61E-02
155	GO:0006817: phosphate ion transport	2.65E-02
156	GO:0044550: secondary metabolite biosynthetic process	2.66E-02
157	GO:0070417: cellular response to cold	2.81E-02
158	GO:0042335: cuticle development	2.97E-02
159	GO:0006662: glycerol ether metabolic process	3.13E-02
160	GO:0010182: sugar mediated signaling pathway	3.13E-02
161	GO:0042752: regulation of circadian rhythm	3.30E-02
162	GO:0009646: response to absence of light	3.30E-02
163	GO:0006814: sodium ion transport	3.30E-02
164	GO:0009791: post-embryonic development	3.47E-02
165	GO:0019252: starch biosynthetic process	3.47E-02
166	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.64E-02
167	GO:0032259: methylation	3.68E-02
168	GO:1901657: glycosyl compound metabolic process	3.99E-02
169	GO:0030163: protein catabolic process	3.99E-02
170	GO:0006464: cellular protein modification process	4.17E-02
171	GO:0016126: sterol biosynthetic process	4.72E-02
172	GO:0006810: transport	4.84E-02
173	GO:0010228: vegetative to reproductive phase transition of meristem	4.89E-02
174	GO:0010029: regulation of seed germination	4.91E-02
175	GO:0009816: defense response to bacterium, incompatible interaction	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
5	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
6	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
7	GO:0008115: sarcosine oxidase activity	0.00E+00
8	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
9	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
10	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
13	GO:0004848: ureidoglycolate hydrolase activity	4.96E-08
14	GO:0016491: oxidoreductase activity	8.30E-06
15	GO:0004180: carboxypeptidase activity	2.05E-05
16	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.05E-05
17	GO:0009882: blue light photoreceptor activity	4.51E-05
18	GO:0048038: quinone binding	4.70E-05
19	GO:0015140: malate transmembrane transporter activity	3.16E-04
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.60E-04
21	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	3.60E-04
22	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.60E-04
23	GO:0004485: methylcrotonoyl-CoA carboxylase activity	3.60E-04
24	GO:0046480: galactolipid galactosyltransferase activity	3.60E-04
25	GO:0046906: tetrapyrrole binding	3.60E-04
26	GO:0080079: cellobiose glucosidase activity	3.60E-04
27	GO:0004824: lysine-tRNA ligase activity	3.60E-04
28	GO:0015085: calcium ion transmembrane transporter activity	3.60E-04
29	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	3.60E-04
30	GO:0004793: threonine aldolase activity	3.60E-04
31	GO:0016783: sulfurtransferase activity	3.60E-04
32	GO:0051996: squalene synthase activity	3.60E-04
33	GO:0008242: omega peptidase activity	3.60E-04
34	GO:0008732: L-allo-threonine aldolase activity	3.60E-04
35	GO:0016920: pyroglutamyl-peptidase activity	3.60E-04
36	GO:0030941: chloroplast targeting sequence binding	3.60E-04
37	GO:0071949: FAD binding	5.82E-04
38	GO:0008237: metallopeptidase activity	7.57E-04
39	GO:0033201: alpha-1,4-glucan synthase activity	7.83E-04
40	GO:0050347: trans-octaprenyltranstransferase activity	7.83E-04
41	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.83E-04
42	GO:0004046: aminoacylase activity	7.83E-04
43	GO:0003988: acetyl-CoA C-acyltransferase activity	7.83E-04
44	GO:0034722: gamma-glutamyl-peptidase activity	7.83E-04
45	GO:0004450: isocitrate dehydrogenase (NADP+) activity	7.83E-04
46	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.83E-04
47	GO:0005366: myo-inositol:proton symporter activity	7.83E-04
48	GO:0004129: cytochrome-c oxidase activity	9.22E-04
49	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.27E-03
50	GO:0046524: sucrose-phosphate synthase activity	1.27E-03
51	GO:0004373: glycogen (starch) synthase activity	1.27E-03
52	GO:0032947: protein complex scaffold	1.27E-03
53	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.27E-03
54	GO:0004557: alpha-galactosidase activity	1.27E-03
55	GO:0004075: biotin carboxylase activity	1.27E-03
56	GO:0000254: C-4 methylsterol oxidase activity	1.83E-03
57	GO:0004792: thiosulfate sulfurtransferase activity	1.83E-03
58	GO:0016851: magnesium chelatase activity	1.83E-03
59	GO:0047627: adenylylsulfatase activity	1.83E-03
60	GO:0015079: potassium ion transmembrane transporter activity	2.05E-03
61	GO:0004176: ATP-dependent peptidase activity	2.25E-03
62	GO:0001053: plastid sigma factor activity	2.45E-03
63	GO:0051861: glycolipid binding	2.45E-03
64	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.45E-03
65	GO:0015369: calcium:proton antiporter activity	2.45E-03
66	GO:0016987: sigma factor activity	2.45E-03
67	GO:0052793: pectin acetylesterase activity	2.45E-03
68	GO:0009011: starch synthase activity	2.45E-03
69	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.45E-03
70	GO:0015368: calcium:cation antiporter activity	2.45E-03
71	GO:0051537: 2 iron, 2 sulfur cluster binding	2.51E-03
72	GO:0005506: iron ion binding	2.81E-03
73	GO:0004623: phospholipase A2 activity	3.14E-03
74	GO:0005275: amine transmembrane transporter activity	3.14E-03
75	GO:0015271: outward rectifier potassium channel activity	3.88E-03
76	GO:0004709: MAP kinase kinase kinase activity	3.88E-03
77	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.88E-03
78	GO:0000293: ferric-chelate reductase activity	3.88E-03
79	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.29E-03
80	GO:0016157: sucrose synthase activity	4.67E-03
81	GO:0004518: nuclease activity	4.86E-03
82	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.52E-03
83	GO:0016621: cinnamoyl-CoA reductase activity	5.52E-03
84	GO:0019899: enzyme binding	5.52E-03
85	GO:0008483: transaminase activity	5.86E-03
86	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.41E-03
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.19E-03
88	GO:0005267: potassium channel activity	7.36E-03
89	GO:0046914: transition metal ion binding	7.36E-03
90	GO:0008236: serine-type peptidase activity	8.18E-03
91	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.35E-03
92	GO:0004222: metalloendopeptidase activity	9.49E-03
93	GO:0008378: galactosyltransferase activity	1.28E-02
94	GO:0004364: glutathione transferase activity	1.36E-02
95	GO:0031072: heat shock protein binding	1.40E-02
96	GO:0000155: phosphorelay sensor kinase activity	1.40E-02
97	GO:0005315: inorganic phosphate transmembrane transporter activity	1.40E-02
98	GO:0042802: identical protein binding	1.42E-02
99	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.52E-02
100	GO:0051287: NAD binding	1.71E-02
101	GO:0003887: DNA-directed DNA polymerase activity	1.78E-02
102	GO:0051536: iron-sulfur cluster binding	1.92E-02
103	GO:0001046: core promoter sequence-specific DNA binding	1.92E-02
104	GO:0003714: transcription corepressor activity	1.92E-02
105	GO:0016887: ATPase activity	2.08E-02
106	GO:0022857: transmembrane transporter activity	2.56E-02
107	GO:0051082: unfolded protein binding	2.72E-02
108	GO:0004812: aminoacyl-tRNA ligase activity	2.81E-02
109	GO:0047134: protein-disulfide reductase activity	2.81E-02
110	GO:0008080: N-acetyltransferase activity	3.13E-02
111	GO:0004791: thioredoxin-disulfide reductase activity	3.30E-02
112	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.30E-02
113	GO:0050662: coenzyme binding	3.30E-02
114	GO:0010181: FMN binding	3.30E-02
115	GO:0016740: transferase activity	3.40E-02
116	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.64E-02
117	GO:0004197: cysteine-type endopeptidase activity	3.81E-02
118	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.99E-02
119	GO:0019825: oxygen binding	4.25E-02
120	GO:0016413: O-acetyltransferase activity	4.54E-02
121	GO:0046872: metal ion binding	4.66E-02
122	GO:0004672: protein kinase activity	4.84E-02
123	GO:0016168: chlorophyll binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	7.35E-17
3	GO:0009535: chloroplast thylakoid membrane	7.42E-07
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.46E-05
5	GO:0031359: integral component of chloroplast outer membrane	3.16E-04
6	GO:0031972: chloroplast intermembrane space	3.60E-04
7	GO:0005777: peroxisome	8.41E-04
8	GO:0009706: chloroplast inner membrane	9.59E-04
9	GO:0016605: PML body	1.27E-03
10	GO:0031969: chloroplast membrane	1.41E-03
11	GO:0042651: thylakoid membrane	2.05E-03
12	GO:0009705: plant-type vacuole membrane	2.20E-03
13	GO:0030286: dynein complex	2.45E-03
14	GO:0031372: UBC13-MMS2 complex	2.45E-03
15	GO:0005773: vacuole	3.85E-03
16	GO:0009536: plastid	4.54E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	4.67E-03
18	GO:0009501: amyloplast	6.41E-03
19	GO:0005779: integral component of peroxisomal membrane	7.36E-03
20	GO:0009707: chloroplast outer membrane	8.60E-03
21	GO:0016604: nuclear body	9.38E-03
22	GO:0005764: lysosome	1.52E-02
23	GO:0043234: protein complex	1.78E-02
24	GO:0005875: microtubule associated complex	1.78E-02
25	GO:0009532: plastid stroma	2.20E-02
26	GO:0009523: photosystem II	3.47E-02
27	GO:0005623: cell	3.49E-02
28	GO:0005759: mitochondrial matrix	4.26E-02
29	GO:0005778: peroxisomal membrane	4.35E-02