co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015813: L-glutamate transport	0.00E+00
2	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
7	GO:0051246: regulation of protein metabolic process	0.00E+00
8	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
9	GO:0042817: pyridoxal metabolic process	0.00E+00
10	GO:0015995: chlorophyll biosynthetic process	2.38E-07
11	GO:0009658: chloroplast organization	3.00E-07
12	GO:0080005: photosystem stoichiometry adjustment	9.42E-07
13	GO:0016123: xanthophyll biosynthetic process	2.54E-05
14	GO:0016120: carotene biosynthetic process	2.54E-05
15	GO:0045038: protein import into chloroplast thylakoid membrane	2.54E-05
16	GO:0048564: photosystem I assembly	9.31E-05
17	GO:0009657: plastid organization	1.17E-04
18	GO:1902458: positive regulation of stomatal opening	1.37E-04
19	GO:0010362: negative regulation of anion channel activity by blue light	1.37E-04
20	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.37E-04
21	GO:0031426: polycistronic mRNA processing	1.37E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	1.37E-04
23	GO:0071806: protein transmembrane transport	1.37E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	1.37E-04
25	GO:0042371: vitamin K biosynthetic process	1.37E-04
26	GO:0071454: cellular response to anoxia	1.37E-04
27	GO:0071461: cellular response to redox state	1.37E-04
28	GO:0015979: photosynthesis	1.41E-04
29	GO:0018298: protein-chromophore linkage	2.09E-04
30	GO:0009767: photosynthetic electron transport chain	3.14E-04
31	GO:0080183: response to photooxidative stress	3.16E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.16E-04
33	GO:0080153: negative regulation of reductive pentose-phosphate cycle	3.16E-04
34	GO:0006739: NADP metabolic process	3.16E-04
35	GO:0046741: transport of virus in host, tissue to tissue	3.16E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.16E-04
37	GO:0034755: iron ion transmembrane transport	3.16E-04
38	GO:0048314: embryo sac morphogenesis	3.16E-04
39	GO:0050688: regulation of defense response to virus	3.16E-04
40	GO:0019253: reductive pentose-phosphate cycle	3.55E-04
41	GO:0010207: photosystem II assembly	3.55E-04
42	GO:0090351: seedling development	3.99E-04
43	GO:0006013: mannose metabolic process	5.20E-04
44	GO:0006696: ergosterol biosynthetic process	5.20E-04
45	GO:0009735: response to cytokinin	5.73E-04
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.44E-04
47	GO:0015729: oxaloacetate transport	7.44E-04
48	GO:0010239: chloroplast mRNA processing	7.44E-04
49	GO:0006809: nitric oxide biosynthetic process	7.44E-04
50	GO:0033014: tetrapyrrole biosynthetic process	7.44E-04
51	GO:0008615: pyridoxine biosynthetic process	7.44E-04
52	GO:0043572: plastid fission	7.44E-04
53	GO:2001141: regulation of RNA biosynthetic process	7.44E-04
54	GO:0009306: protein secretion	7.68E-04
55	GO:0016117: carotenoid biosynthetic process	8.29E-04
56	GO:0019676: ammonia assimilation cycle	9.85E-04
57	GO:0015743: malate transport	9.85E-04
58	GO:0009765: photosynthesis, light harvesting	9.85E-04
59	GO:0006734: NADH metabolic process	9.85E-04
60	GO:0009902: chloroplast relocation	9.85E-04
61	GO:0009791: post-embryonic development	1.10E-03
62	GO:0010193: response to ozone	1.17E-03
63	GO:0009616: virus induced gene silencing	1.25E-03
64	GO:0071423: malate transmembrane transport	1.25E-03
65	GO:0010190: cytochrome b6f complex assembly	1.53E-03
66	GO:0009643: photosynthetic acclimation	1.53E-03
67	GO:0010027: thylakoid membrane organization	1.68E-03
68	GO:0010019: chloroplast-nucleus signaling pathway	1.83E-03
69	GO:0017148: negative regulation of translation	1.83E-03
70	GO:0055114: oxidation-reduction process	1.89E-03
71	GO:0006401: RNA catabolic process	2.15E-03
72	GO:0048528: post-embryonic root development	2.15E-03
73	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-03
74	GO:1900056: negative regulation of leaf senescence	2.15E-03
75	GO:0010050: vegetative phase change	2.15E-03
76	GO:0006402: mRNA catabolic process	2.49E-03
77	GO:0006605: protein targeting	2.49E-03
78	GO:2000070: regulation of response to water deprivation	2.49E-03
79	GO:0071482: cellular response to light stimulus	2.85E-03
80	GO:0032544: plastid translation	2.85E-03
81	GO:0048507: meristem development	3.22E-03
82	GO:0000373: Group II intron splicing	3.22E-03
83	GO:0009744: response to sucrose	3.54E-03
84	GO:0009638: phototropism	3.60E-03
85	GO:0009098: leucine biosynthetic process	3.60E-03
86	GO:0010380: regulation of chlorophyll biosynthetic process	3.60E-03
87	GO:0031425: chloroplast RNA processing	3.60E-03
88	GO:0010267: production of ta-siRNAs involved in RNA interference	3.60E-03
89	GO:0009644: response to high light intensity	3.82E-03
90	GO:0045036: protein targeting to chloroplast	4.00E-03
91	GO:0006259: DNA metabolic process	4.00E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	4.00E-03
93	GO:0009773: photosynthetic electron transport in photosystem I	4.42E-03
94	GO:0006265: DNA topological change	4.42E-03
95	GO:0043085: positive regulation of catalytic activity	4.42E-03
96	GO:0006879: cellular iron ion homeostasis	4.42E-03
97	GO:0006352: DNA-templated transcription, initiation	4.42E-03
98	GO:0006364: rRNA processing	4.75E-03
99	GO:0045037: protein import into chloroplast stroma	4.85E-03
100	GO:0009725: response to hormone	5.30E-03
101	GO:0034605: cellular response to heat	5.76E-03
102	GO:0010020: chloroplast fission	5.76E-03
103	GO:0010025: wax biosynthetic process	6.71E-03
104	GO:0051302: regulation of cell division	7.73E-03
105	GO:0007017: microtubule-based process	7.73E-03
106	GO:0051321: meiotic cell cycle	8.26E-03
107	GO:0016226: iron-sulfur cluster assembly	8.79E-03
108	GO:0080092: regulation of pollen tube growth	8.79E-03
109	GO:0070417: cellular response to cold	1.05E-02
110	GO:0010118: stomatal movement	1.11E-02
111	GO:0008033: tRNA processing	1.11E-02
112	GO:0007623: circadian rhythm	1.17E-02
113	GO:0006814: sodium ion transport	1.23E-02
114	GO:0007059: chromosome segregation	1.23E-02
115	GO:0015986: ATP synthesis coupled proton transport	1.23E-02
116	GO:0000302: response to reactive oxygen species	1.36E-02
117	GO:0009416: response to light stimulus	1.40E-02
118	GO:0010468: regulation of gene expression	1.40E-02
119	GO:0019761: glucosinolate biosynthetic process	1.42E-02
120	GO:0030163: protein catabolic process	1.49E-02
121	GO:0010286: heat acclimation	1.62E-02
122	GO:0051607: defense response to virus	1.69E-02
123	GO:0046686: response to cadmium ion	1.77E-02
124	GO:0009816: defense response to bacterium, incompatible interaction	1.83E-02
125	GO:0000160: phosphorelay signal transduction system	2.20E-02
126	GO:0006811: ion transport	2.28E-02
127	GO:0007568: aging	2.36E-02
128	GO:0009910: negative regulation of flower development	2.36E-02
129	GO:0046777: protein autophosphorylation	2.41E-02
130	GO:0000724: double-strand break repair via homologous recombination	2.43E-02
131	GO:0009637: response to blue light	2.51E-02
132	GO:0009853: photorespiration	2.51E-02
133	GO:0010114: response to red light	3.01E-02
134	GO:0031347: regulation of defense response	3.45E-02
135	GO:0006397: mRNA processing	3.47E-02
136	GO:0042538: hyperosmotic salinity response	3.54E-02
137	GO:0010224: response to UV-B	3.82E-02
138	GO:0006417: regulation of translation	4.00E-02
139	GO:0006096: glycolytic process	4.19E-02
140	GO:0009553: embryo sac development	4.68E-02
141	GO:0009624: response to nematode	4.78E-02
142	GO:0006396: RNA processing	4.88E-02
143	GO:0009409: response to cold	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	8.27E-06
6	GO:0019899: enzyme binding	7.18E-05
7	GO:0048038: quinone binding	8.34E-05
8	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.37E-04
9	GO:0046906: tetrapyrrole binding	1.37E-04
10	GO:0004733: pyridoxamine-phosphate oxidase activity	1.37E-04
11	GO:0051996: squalene synthase activity	1.37E-04
12	GO:0052856: NADHX epimerase activity	1.37E-04
13	GO:0052857: NADPHX epimerase activity	1.37E-04
14	GO:0030941: chloroplast targeting sequence binding	1.37E-04
15	GO:0004618: phosphoglycerate kinase activity	3.16E-04
16	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.16E-04
17	GO:0004109: coproporphyrinogen oxidase activity	3.16E-04
18	GO:0015367: oxoglutarate:malate antiporter activity	3.16E-04
19	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.16E-04
20	GO:0003862: 3-isopropylmalate dehydrogenase activity	3.16E-04
21	GO:0004180: carboxypeptidase activity	5.20E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.20E-04
23	GO:0032947: protein complex scaffold	5.20E-04
24	GO:0004848: ureidoglycolate hydrolase activity	5.20E-04
25	GO:0004148: dihydrolipoyl dehydrogenase activity	5.20E-04
26	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.20E-04
27	GO:0022891: substrate-specific transmembrane transporter activity	7.07E-04
28	GO:0048027: mRNA 5'-UTR binding	7.44E-04
29	GO:0015131: oxaloacetate transmembrane transporter activity	7.44E-04
30	GO:0009882: blue light photoreceptor activity	7.44E-04
31	GO:0043023: ribosomal large subunit binding	7.44E-04
32	GO:0001053: plastid sigma factor activity	9.85E-04
33	GO:0051861: glycolipid binding	9.85E-04
34	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.85E-04
35	GO:0016987: sigma factor activity	9.85E-04
36	GO:0005313: L-glutamate transmembrane transporter activity	9.85E-04
37	GO:0043495: protein anchor	9.85E-04
38	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	9.85E-04
39	GO:0010181: FMN binding	1.03E-03
40	GO:0016168: chlorophyll binding	1.77E-03
41	GO:0004559: alpha-mannosidase activity	1.83E-03
42	GO:0015140: malate transmembrane transporter activity	2.15E-03
43	GO:0042802: identical protein binding	2.45E-03
44	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.85E-03
45	GO:0005381: iron ion transmembrane transporter activity	3.60E-03
46	GO:0045309: protein phosphorylated amino acid binding	3.60E-03
47	GO:0051537: 2 iron, 2 sulfur cluster binding	3.82E-03
48	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.42E-03
49	GO:0019904: protein domain specific binding	4.42E-03
50	GO:0031072: heat shock protein binding	5.30E-03
51	GO:0000155: phosphorelay sensor kinase activity	5.30E-03
52	GO:0000175: 3'-5'-exoribonuclease activity	5.30E-03
53	GO:0008061: chitin binding	6.23E-03
54	GO:0051536: iron-sulfur cluster binding	7.22E-03
55	GO:0004176: ATP-dependent peptidase activity	8.26E-03
56	GO:0005515: protein binding	8.39E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.69E-03
58	GO:0005506: iron ion binding	8.86E-03
59	GO:0003727: single-stranded RNA binding	9.92E-03
60	GO:0008565: protein transporter activity	1.01E-02
61	GO:0008080: N-acetyltransferase activity	1.17E-02
62	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.17E-02
63	GO:0004872: receptor activity	1.29E-02
64	GO:0016491: oxidoreductase activity	1.38E-02
65	GO:0008237: metallopeptidase activity	1.62E-02
66	GO:0008236: serine-type peptidase activity	2.05E-02
67	GO:0004222: metalloendopeptidase activity	2.28E-02
68	GO:0050897: cobalt ion binding	2.36E-02
69	GO:0043621: protein self-association	3.19E-02
70	GO:0005198: structural molecule activity	3.27E-02
71	GO:0003924: GTPase activity	3.32E-02
72	GO:0051287: NAD binding	3.45E-02
73	GO:0009055: electron carrier activity	3.56E-02
74	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.72E-02
75	GO:0003777: microtubule motor activity	4.00E-02
76	GO:0051082: unfolded protein binding	4.78E-02
77	GO:0016746: transferase activity, transferring acyl groups	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.77E-33
2	GO:0009535: chloroplast thylakoid membrane	1.08E-20
3	GO:0009570: chloroplast stroma	1.35E-10
4	GO:0009941: chloroplast envelope	1.00E-09
5	GO:0033281: TAT protein transport complex	3.53E-06
6	GO:0009706: chloroplast inner membrane	6.56E-06
7	GO:0009579: thylakoid	2.65E-05
8	GO:0009534: chloroplast thylakoid	2.73E-05
9	GO:0009536: plastid	3.43E-05
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.44E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	3.16E-04
12	GO:0009528: plastid inner membrane	5.20E-04
13	GO:0010007: magnesium chelatase complex	5.20E-04
14	GO:0042651: thylakoid membrane	5.43E-04
15	GO:0031969: chloroplast membrane	7.29E-04
16	GO:0030286: dynein complex	9.85E-04
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	9.85E-04
18	GO:0009523: photosystem II	1.10E-03
19	GO:0010287: plastoglobule	1.13E-03
20	GO:0009295: nucleoid	1.50E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.53E-03
22	GO:0005655: nucleolar ribonuclease P complex	1.83E-03
23	GO:0031359: integral component of chloroplast outer membrane	2.15E-03
24	GO:0009707: chloroplast outer membrane	2.18E-03
25	GO:0046930: pore complex	2.85E-03
26	GO:0009539: photosystem II reaction center	2.85E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.85E-03
28	GO:0042644: chloroplast nucleoid	3.22E-03
29	GO:0016324: apical plasma membrane	4.00E-03
30	GO:0048471: perinuclear region of cytoplasm	4.42E-03
31	GO:0031966: mitochondrial membrane	4.43E-03
32	GO:0009508: plastid chromosome	5.30E-03
33	GO:0030095: chloroplast photosystem II	5.76E-03
34	GO:0005747: mitochondrial respiratory chain complex I	5.80E-03
35	GO:0043234: protein complex	6.71E-03
36	GO:0005875: microtubule associated complex	6.71E-03
37	GO:0009654: photosystem II oxygen evolving complex	7.73E-03
38	GO:0045271: respiratory chain complex I	7.73E-03
39	GO:0009543: chloroplast thylakoid lumen	8.46E-03
40	GO:0005623: cell	8.69E-03
41	GO:0005739: mitochondrion	1.47E-02
42	GO:0010319: stromule	1.62E-02
43	GO:0005778: peroxisomal membrane	1.62E-02
44	GO:0031977: thylakoid lumen	2.84E-02
45	GO:0009505: plant-type cell wall	4.48E-02