co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018293: protein-FAD linkage	0.00E+00
2	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0046292: formaldehyde metabolic process	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0016093: polyprenol metabolic process	0.00E+00
7	GO:0010336: gibberellic acid homeostasis	0.00E+00
8	GO:0006721: terpenoid metabolic process	0.00E+00
9	GO:0006793: phosphorus metabolic process	0.00E+00
10	GO:0006069: ethanol oxidation	0.00E+00
11	GO:0042908: xenobiotic transport	0.00E+00
12	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
13	GO:0055114: oxidation-reduction process	1.60E-11
14	GO:0051603: proteolysis involved in cellular protein catabolic process	2.83E-07
15	GO:0006099: tricarboxylic acid cycle	3.83E-05
16	GO:0050790: regulation of catalytic activity	1.05E-04
17	GO:0006835: dicarboxylic acid transport	1.75E-04
18	GO:0000305: response to oxygen radical	1.75E-04
19	GO:0016487: farnesol metabolic process	1.75E-04
20	GO:0031539: positive regulation of anthocyanin metabolic process	1.75E-04
21	GO:0006007: glucose catabolic process	1.75E-04
22	GO:0031468: nuclear envelope reassembly	1.75E-04
23	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.75E-04
24	GO:0043255: regulation of carbohydrate biosynthetic process	3.96E-04
25	GO:0080026: response to indolebutyric acid	3.96E-04
26	GO:0019441: tryptophan catabolic process to kynurenine	3.96E-04
27	GO:0097054: L-glutamate biosynthetic process	3.96E-04
28	GO:0051592: response to calcium ion	3.96E-04
29	GO:0080183: response to photooxidative stress	3.96E-04
30	GO:0043100: pyrimidine nucleobase salvage	3.96E-04
31	GO:1901562: response to paraquat	6.47E-04
32	GO:0010351: lithium ion transport	6.47E-04
33	GO:0009963: positive regulation of flavonoid biosynthetic process	9.23E-04
34	GO:0006516: glycoprotein catabolic process	9.23E-04
35	GO:0006537: glutamate biosynthetic process	9.23E-04
36	GO:0015700: arsenite transport	9.23E-04
37	GO:1901332: negative regulation of lateral root development	9.23E-04
38	GO:0080024: indolebutyric acid metabolic process	9.23E-04
39	GO:0006882: cellular zinc ion homeostasis	9.23E-04
40	GO:0006508: proteolysis	1.08E-03
41	GO:0070534: protein K63-linked ubiquitination	1.22E-03
42	GO:0019676: ammonia assimilation cycle	1.22E-03
43	GO:0015743: malate transport	1.22E-03
44	GO:0015846: polyamine transport	1.22E-03
45	GO:0006749: glutathione metabolic process	1.22E-03
46	GO:0032366: intracellular sterol transport	1.22E-03
47	GO:0006646: phosphatidylethanolamine biosynthetic process	1.22E-03
48	GO:0044550: secondary metabolite biosynthetic process	1.37E-03
49	GO:0006814: sodium ion transport	1.42E-03
50	GO:0009229: thiamine diphosphate biosynthetic process	1.56E-03
51	GO:0006555: methionine metabolic process	1.91E-03
52	GO:0009228: thiamine biosynthetic process	1.91E-03
53	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.91E-03
54	GO:0006301: postreplication repair	1.91E-03
55	GO:0019509: L-methionine salvage from methylthioadenosine	2.30E-03
56	GO:1901001: negative regulation of response to salt stress	2.30E-03
57	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.30E-03
58	GO:0010189: vitamin E biosynthetic process	2.30E-03
59	GO:0005975: carbohydrate metabolic process	2.54E-03
60	GO:0006955: immune response	2.70E-03
61	GO:0030026: cellular manganese ion homeostasis	2.70E-03
62	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.13E-03
63	GO:0030091: protein repair	3.13E-03
64	GO:0007568: aging	3.51E-03
65	GO:0010099: regulation of photomorphogenesis	3.58E-03
66	GO:0015996: chlorophyll catabolic process	3.58E-03
67	GO:0046685: response to arsenic-containing substance	4.05E-03
68	GO:0009821: alkaloid biosynthetic process	4.05E-03
69	GO:0051453: regulation of intracellular pH	4.54E-03
70	GO:0006896: Golgi to vacuole transport	5.05E-03
71	GO:0055062: phosphate ion homeostasis	5.05E-03
72	GO:0045036: protein targeting to chloroplast	5.05E-03
73	GO:0018119: peptidyl-cysteine S-nitrosylation	5.58E-03
74	GO:0006378: mRNA polyadenylation	5.58E-03
75	GO:0002213: defense response to insect	6.13E-03
76	GO:0006108: malate metabolic process	6.70E-03
77	GO:0050826: response to freezing	6.70E-03
78	GO:0007034: vacuolar transport	7.28E-03
79	GO:0042343: indole glucosinolate metabolic process	7.89E-03
80	GO:0007030: Golgi organization	7.89E-03
81	GO:0042753: positive regulation of circadian rhythm	8.51E-03
82	GO:0046686: response to cadmium ion	9.08E-03
83	GO:0006487: protein N-linked glycosylation	9.15E-03
84	GO:0006874: cellular calcium ion homeostasis	9.80E-03
85	GO:0098542: defense response to other organism	1.05E-02
86	GO:0019748: secondary metabolic process	1.12E-02
87	GO:0010017: red or far-red light signaling pathway	1.12E-02
88	GO:0006012: galactose metabolic process	1.19E-02
89	GO:0009058: biosynthetic process	1.26E-02
90	GO:0010118: stomatal movement	1.41E-02
91	GO:0015991: ATP hydrolysis coupled proton transport	1.41E-02
92	GO:0042391: regulation of membrane potential	1.41E-02
93	GO:0080022: primary root development	1.41E-02
94	GO:0034220: ion transmembrane transport	1.41E-02
95	GO:0010268: brassinosteroid homeostasis	1.49E-02
96	GO:0009958: positive gravitropism	1.49E-02
97	GO:0006520: cellular amino acid metabolic process	1.49E-02
98	GO:0061025: membrane fusion	1.56E-02
99	GO:0006623: protein targeting to vacuole	1.64E-02
100	GO:0008654: phospholipid biosynthetic process	1.64E-02
101	GO:0016132: brassinosteroid biosynthetic process	1.72E-02
102	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.72E-02
103	GO:1901657: glycosyl compound metabolic process	1.89E-02
104	GO:0016125: sterol metabolic process	1.98E-02
105	GO:0006464: cellular protein modification process	1.98E-02
106	GO:0010286: heat acclimation	2.06E-02
107	GO:0009615: response to virus	2.24E-02
108	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.33E-02
109	GO:0042128: nitrate assimilation	2.42E-02
110	GO:0010411: xyloglucan metabolic process	2.52E-02
111	GO:0008219: cell death	2.71E-02
112	GO:0048767: root hair elongation	2.80E-02
113	GO:0010311: lateral root formation	2.80E-02
114	GO:0006811: ion transport	2.90E-02
115	GO:0009407: toxin catabolic process	2.90E-02
116	GO:0010218: response to far red light	2.90E-02
117	GO:0009723: response to ethylene	2.95E-02
118	GO:0010043: response to zinc ion	3.00E-02
119	GO:0080167: response to karrikin	3.16E-02
120	GO:0009651: response to salt stress	3.35E-02
121	GO:0006631: fatty acid metabolic process	3.62E-02
122	GO:0045454: cell redox homeostasis	3.78E-02
123	GO:0009640: photomorphogenesis	3.84E-02
124	GO:0010114: response to red light	3.84E-02
125	GO:0009636: response to toxic substance	4.17E-02
126	GO:0006855: drug transmembrane transport	4.28E-02
127	GO:0042538: hyperosmotic salinity response	4.51E-02
128	GO:0006812: cation transport	4.51E-02
129	GO:0006629: lipid metabolic process	4.65E-02
130	GO:0009809: lignin biosynthetic process	4.74E-02
131	GO:0006486: protein glycosylation	4.74E-02
132	GO:0009585: red, far-red light phototransduction	4.74E-02
133	GO:0010224: response to UV-B	4.86E-02
134	GO:0006857: oligopeptide transport	4.97E-02
135	GO:0009414: response to water deprivation	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
4	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
5	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
6	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
7	GO:0015930: glutamate synthase activity	0.00E+00
8	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
9	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
10	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
11	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
12	GO:0015391: nucleobase:cation symporter activity	0.00E+00
13	GO:0050334: thiaminase activity	0.00E+00
14	GO:0047886: farnesol dehydrogenase activity	0.00E+00
15	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
16	GO:0042030: ATPase inhibitor activity	0.00E+00
17	GO:0004197: cysteine-type endopeptidase activity	1.61E-07
18	GO:0008234: cysteine-type peptidase activity	3.51E-07
19	GO:0016491: oxidoreductase activity	2.97E-06
20	GO:0052692: raffinose alpha-galactosidase activity	5.48E-06
21	GO:0004557: alpha-galactosidase activity	5.48E-06
22	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.27E-05
23	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.27E-05
24	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.37E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.75E-04
26	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.75E-04
27	GO:0046480: galactolipid galactosyltransferase activity	1.75E-04
28	GO:0080079: cellobiose glucosidase activity	1.75E-04
29	GO:0004560: alpha-L-fucosidase activity	1.75E-04
30	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.75E-04
31	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.75E-04
32	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.75E-04
33	GO:0008802: betaine-aldehyde dehydrogenase activity	1.75E-04
34	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.75E-04
35	GO:0010209: vacuolar sorting signal binding	1.75E-04
36	GO:0071992: phytochelatin transmembrane transporter activity	1.75E-04
37	GO:0004307: ethanolaminephosphotransferase activity	1.75E-04
38	GO:0016041: glutamate synthase (ferredoxin) activity	1.75E-04
39	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.75E-04
40	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	3.96E-04
41	GO:0030572: phosphatidyltransferase activity	3.96E-04
42	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.96E-04
43	GO:0004061: arylformamidase activity	3.96E-04
44	GO:0004362: glutathione-disulfide reductase activity	3.96E-04
45	GO:0015179: L-amino acid transmembrane transporter activity	3.96E-04
46	GO:0004022: alcohol dehydrogenase (NAD) activity	4.39E-04
47	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.47E-04
48	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.47E-04
49	GO:0015203: polyamine transmembrane transporter activity	9.23E-04
50	GO:0016656: monodehydroascorbate reductase (NADH) activity	9.23E-04
51	GO:0005506: iron ion binding	1.08E-03
52	GO:0015369: calcium:proton antiporter activity	1.22E-03
53	GO:0004301: epoxide hydrolase activity	1.22E-03
54	GO:0015368: calcium:cation antiporter activity	1.22E-03
55	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.56E-03
56	GO:0051538: 3 iron, 4 sulfur cluster binding	1.56E-03
57	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.79E-03
58	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.91E-03
59	GO:0051117: ATPase binding	1.91E-03
60	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.91E-03
61	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.91E-03
62	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.91E-03
63	GO:0016615: malate dehydrogenase activity	1.91E-03
64	GO:0019825: oxygen binding	2.26E-03
65	GO:0051920: peroxiredoxin activity	2.30E-03
66	GO:0030060: L-malate dehydrogenase activity	2.30E-03
67	GO:0005261: cation channel activity	2.30E-03
68	GO:0015140: malate transmembrane transporter activity	2.70E-03
69	GO:0020037: heme binding	2.74E-03
70	GO:0016209: antioxidant activity	3.13E-03
71	GO:0004034: aldose 1-epimerase activity	3.13E-03
72	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.13E-03
73	GO:0015491: cation:cation antiporter activity	3.13E-03
74	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.05E-03
75	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.05E-03
76	GO:0051539: 4 iron, 4 sulfur cluster binding	4.38E-03
77	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.54E-03
78	GO:0015174: basic amino acid transmembrane transporter activity	4.54E-03
79	GO:0016844: strictosidine synthase activity	4.54E-03
80	GO:0016788: hydrolase activity, acting on ester bonds	4.94E-03
81	GO:0004185: serine-type carboxypeptidase activity	4.95E-03
82	GO:0004129: cytochrome-c oxidase activity	5.58E-03
83	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.58E-03
84	GO:0008559: xenobiotic-transporting ATPase activity	5.58E-03
85	GO:0050660: flavin adenine dinucleotide binding	5.81E-03
86	GO:0008378: galactosyltransferase activity	6.13E-03
87	GO:0030552: cAMP binding	7.89E-03
88	GO:0030553: cGMP binding	7.89E-03
89	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	8.14E-03
90	GO:0043130: ubiquitin binding	9.15E-03
91	GO:0005216: ion channel activity	9.80E-03
92	GO:0008324: cation transmembrane transporter activity	9.80E-03
93	GO:0005249: voltage-gated potassium channel activity	1.41E-02
94	GO:0030551: cyclic nucleotide binding	1.41E-02
95	GO:0016853: isomerase activity	1.56E-02
96	GO:0050662: coenzyme binding	1.56E-02
97	GO:0016413: O-acetyltransferase activity	2.15E-02
98	GO:0015250: water channel activity	2.24E-02
99	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.42E-02
100	GO:0004683: calmodulin-dependent protein kinase activity	2.52E-02
101	GO:0008236: serine-type peptidase activity	2.61E-02
102	GO:0030145: manganese ion binding	3.00E-02
103	GO:0008422: beta-glucosidase activity	3.41E-02
104	GO:0052689: carboxylic ester hydrolase activity	3.49E-02
105	GO:0050661: NADP binding	3.52E-02
106	GO:0005516: calmodulin binding	3.58E-02
107	GO:0004364: glutathione transferase activity	3.73E-02
108	GO:0051537: 2 iron, 2 sulfur cluster binding	4.06E-02
109	GO:0015293: symporter activity	4.17E-02
110	GO:0016787: hydrolase activity	4.65E-02
111	GO:0016298: lipase activity	4.86E-02
112	GO:0003690: double-stranded DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0097708: intracellular vesicle	0.00E+00
3	GO:0005773: vacuole	4.93E-11
4	GO:0005764: lysosome	3.63E-09
5	GO:0005747: mitochondrial respiratory chain complex I	1.04E-05
6	GO:0005615: extracellular space	6.95E-05
7	GO:0045273: respiratory chain complex II	1.35E-04
8	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.35E-04
9	GO:0048046: apoplast	1.50E-04
10	GO:0005777: peroxisome	3.56E-04
11	GO:0005759: mitochondrial matrix	3.90E-04
12	GO:0005782: peroxisomal matrix	6.47E-04
13	GO:0005849: mRNA cleavage factor complex	9.23E-04
14	GO:0005783: endoplasmic reticulum	1.04E-03
15	GO:0031372: UBC13-MMS2 complex	1.22E-03
16	GO:0009526: plastid envelope	1.22E-03
17	GO:0005829: cytosol	1.41E-03
18	GO:0005774: vacuolar membrane	1.44E-03
19	GO:0005746: mitochondrial respiratory chain	1.56E-03
20	GO:0031463: Cul3-RING ubiquitin ligase complex	1.91E-03
21	GO:0031359: integral component of chloroplast outer membrane	2.70E-03
22	GO:0009501: amyloplast	3.13E-03
23	GO:0005887: integral component of plasma membrane	3.48E-03
24	GO:0000325: plant-type vacuole	3.51E-03
25	GO:0010494: cytoplasmic stress granule	4.05E-03
26	GO:0030665: clathrin-coated vesicle membrane	4.54E-03
27	GO:0005576: extracellular region	4.74E-03
28	GO:0017119: Golgi transport complex	5.05E-03
29	GO:0009536: plastid	5.99E-03
30	GO:0005750: mitochondrial respiratory chain complex III	7.28E-03
31	GO:0009507: chloroplast	8.22E-03
32	GO:0005758: mitochondrial intermembrane space	9.15E-03
33	GO:0005623: cell	1.22E-02
34	GO:0005770: late endosome	1.49E-02
35	GO:0010319: stromule	2.06E-02
36	GO:0009505: plant-type cell wall	2.13E-02
37	GO:0000932: P-body	2.24E-02
38	GO:0009707: chloroplast outer membrane	2.71E-02
39	GO:0031969: chloroplast membrane	3.16E-02
40	GO:0016020: membrane	3.17E-02
41	GO:0031902: late endosome membrane	3.62E-02