Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032497: detection of lipopolysaccharide0.00E+00
2GO:2000636: positive regulation of primary miRNA processing0.00E+00
3GO:0010046: response to mycotoxin0.00E+00
4GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
5GO:0019593: mannitol biosynthetic process0.00E+00
6GO:0046398: UDP-glucuronate metabolic process0.00E+00
7GO:0052573: UDP-D-galactose metabolic process0.00E+00
8GO:2000630: positive regulation of miRNA metabolic process0.00E+00
9GO:0042353: fucose biosynthetic process0.00E+00
10GO:0007141: male meiosis I0.00E+00
11GO:0010200: response to chitin1.93E-07
12GO:0006955: immune response4.86E-06
13GO:0009611: response to wounding9.68E-06
14GO:0006468: protein phosphorylation3.22E-05
15GO:0070588: calcium ion transmembrane transport7.45E-05
16GO:0009737: response to abscisic acid8.04E-05
17GO:0010337: regulation of salicylic acid metabolic process1.29E-04
18GO:0009873: ethylene-activated signaling pathway1.36E-04
19GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.30E-04
20GO:2000070: regulation of response to water deprivation2.91E-04
21GO:0030974: thiamine pyrophosphate transport2.92E-04
22GO:0050691: regulation of defense response to virus by host2.92E-04
23GO:0006680: glucosylceramide catabolic process2.92E-04
24GO:0034620: cellular response to unfolded protein2.92E-04
25GO:0090421: embryonic meristem initiation2.92E-04
26GO:0034472: snRNA 3'-end processing2.92E-04
27GO:0009609: response to symbiotic bacterium2.92E-04
28GO:0051180: vitamin transport2.92E-04
29GO:0009751: response to salicylic acid3.65E-04
30GO:0098656: anion transmembrane transport4.30E-04
31GO:2000280: regulation of root development5.10E-04
32GO:0006970: response to osmotic stress6.39E-04
33GO:0015893: drug transport6.40E-04
34GO:0052542: defense response by callose deposition6.40E-04
35GO:1901679: nucleotide transmembrane transport6.40E-04
36GO:0031407: oxylipin metabolic process6.40E-04
37GO:0042754: negative regulation of circadian rhythm6.40E-04
38GO:0010289: homogalacturonan biosynthetic process6.40E-04
39GO:2000030: regulation of response to red or far red light6.40E-04
40GO:0006898: receptor-mediated endocytosis6.40E-04
41GO:0080121: AMP transport1.04E-03
42GO:0016045: detection of bacterium1.04E-03
43GO:0010359: regulation of anion channel activity1.04E-03
44GO:0010288: response to lead ion1.04E-03
45GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.04E-03
46GO:0010325: raffinose family oligosaccharide biosynthetic process1.04E-03
47GO:0006011: UDP-glucose metabolic process1.04E-03
48GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.04E-03
49GO:0080168: abscisic acid transport1.04E-03
50GO:0009863: salicylic acid mediated signaling pathway1.37E-03
51GO:0009226: nucleotide-sugar biosynthetic process1.48E-03
52GO:0030100: regulation of endocytosis1.48E-03
53GO:0009399: nitrogen fixation1.48E-03
54GO:0033014: tetrapyrrole biosynthetic process1.48E-03
55GO:0009695: jasmonic acid biosynthetic process1.51E-03
56GO:0031408: oxylipin biosynthetic process1.66E-03
57GO:0015867: ATP transport1.99E-03
58GO:0042991: transcription factor import into nucleus1.99E-03
59GO:1902347: response to strigolactone1.99E-03
60GO:0009694: jasmonic acid metabolic process1.99E-03
61GO:0006536: glutamate metabolic process1.99E-03
62GO:0033356: UDP-L-arabinose metabolic process1.99E-03
63GO:0048497: maintenance of floral organ identity2.54E-03
64GO:0006665: sphingolipid metabolic process2.54E-03
65GO:0048544: recognition of pollen2.91E-03
66GO:0009626: plant-type hypersensitive response3.00E-03
67GO:0009620: response to fungus3.12E-03
68GO:0047484: regulation of response to osmotic stress3.14E-03
69GO:0035435: phosphate ion transmembrane transport3.14E-03
70GO:0006751: glutathione catabolic process3.14E-03
71GO:0015866: ADP transport3.14E-03
72GO:0010256: endomembrane system organization3.14E-03
73GO:0048232: male gamete generation3.14E-03
74GO:0010193: response to ozone3.34E-03
75GO:0098655: cation transmembrane transport3.77E-03
76GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.77E-03
77GO:0010555: response to mannitol3.77E-03
78GO:1901001: negative regulation of response to salt stress3.77E-03
79GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.77E-03
80GO:0009742: brassinosteroid mediated signaling pathway3.78E-03
81GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.89E-03
82GO:0009555: pollen development4.43E-03
83GO:0051510: regulation of unidimensional cell growth4.45E-03
84GO:1902074: response to salt4.45E-03
85GO:0006401: RNA catabolic process4.45E-03
86GO:0030497: fatty acid elongation4.45E-03
87GO:0010029: regulation of seed germination5.10E-03
88GO:1900150: regulation of defense response to fungus5.17E-03
89GO:0007155: cell adhesion5.17E-03
90GO:0006997: nucleus organization5.92E-03
91GO:0009699: phenylpropanoid biosynthetic process5.92E-03
92GO:0009880: embryonic pattern specification5.92E-03
93GO:0009827: plant-type cell wall modification5.92E-03
94GO:0048193: Golgi vesicle transport5.92E-03
95GO:0006633: fatty acid biosynthetic process6.24E-03
96GO:0008219: cell death6.29E-03
97GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay6.71E-03
98GO:0006783: heme biosynthetic process6.71E-03
99GO:0001708: cell fate specification6.71E-03
100GO:0051865: protein autoubiquitination6.71E-03
101GO:0090305: nucleic acid phosphodiester bond hydrolysis6.71E-03
102GO:0006811: ion transport6.94E-03
103GO:0007623: circadian rhythm7.04E-03
104GO:0009753: response to jasmonic acid7.44E-03
105GO:0006779: porphyrin-containing compound biosynthetic process7.54E-03
106GO:0045087: innate immune response7.98E-03
107GO:0007166: cell surface receptor signaling pathway8.35E-03
108GO:0048829: root cap development8.40E-03
109GO:0006782: protoporphyrinogen IX biosynthetic process8.40E-03
110GO:0055062: phosphate ion homeostasis8.40E-03
111GO:0051026: chiasma assembly8.40E-03
112GO:0019538: protein metabolic process8.40E-03
113GO:0009409: response to cold8.66E-03
114GO:0006839: mitochondrial transport9.10E-03
115GO:0030148: sphingolipid biosynthetic process9.30E-03
116GO:0010015: root morphogenesis9.30E-03
117GO:0000038: very long-chain fatty acid metabolic process9.30E-03
118GO:0052544: defense response by callose deposition in cell wall9.30E-03
119GO:0008285: negative regulation of cell proliferation9.30E-03
120GO:0010105: negative regulation of ethylene-activated signaling pathway1.02E-02
121GO:0071365: cellular response to auxin stimulus1.02E-02
122GO:0051707: response to other organism1.03E-02
123GO:0018107: peptidyl-threonine phosphorylation1.12E-02
124GO:0055046: microgametogenesis1.12E-02
125GO:0005986: sucrose biosynthetic process1.12E-02
126GO:0048467: gynoecium development1.22E-02
127GO:0034605: cellular response to heat1.22E-02
128GO:0002237: response to molecule of bacterial origin1.22E-02
129GO:0071732: cellular response to nitric oxide1.32E-02
130GO:0009969: xyloglucan biosynthetic process1.32E-02
131GO:0080188: RNA-directed DNA methylation1.32E-02
132GO:0006364: rRNA processing1.39E-02
133GO:0010025: wax biosynthetic process1.43E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.43E-02
135GO:0009414: response to water deprivation1.45E-02
136GO:0009738: abscisic acid-activated signaling pathway1.52E-02
137GO:2000377: regulation of reactive oxygen species metabolic process1.54E-02
138GO:0046777: protein autophosphorylation1.76E-02
139GO:0016998: cell wall macromolecule catabolic process1.76E-02
140GO:0009269: response to desiccation1.76E-02
141GO:0007131: reciprocal meiotic recombination1.88E-02
142GO:0030433: ubiquitin-dependent ERAD pathway1.88E-02
143GO:0031348: negative regulation of defense response1.88E-02
144GO:0071456: cellular response to hypoxia1.88E-02
145GO:0030245: cellulose catabolic process1.88E-02
146GO:0009814: defense response, incompatible interaction1.88E-02
147GO:0009651: response to salt stress1.98E-02
148GO:0009624: response to nematode1.99E-02
149GO:0071369: cellular response to ethylene stimulus2.00E-02
150GO:0001944: vasculature development2.00E-02
151GO:0018105: peptidyl-serine phosphorylation2.05E-02
152GO:0006355: regulation of transcription, DNA-templated2.06E-02
153GO:0045892: negative regulation of transcription, DNA-templated2.07E-02
154GO:0010089: xylem development2.12E-02
155GO:0048443: stamen development2.12E-02
156GO:0070417: cellular response to cold2.25E-02
157GO:0000398: mRNA splicing, via spliceosome2.29E-02
158GO:0010501: RNA secondary structure unwinding2.37E-02
159GO:0042335: cuticle development2.37E-02
160GO:0009741: response to brassinosteroid2.50E-02
161GO:0045489: pectin biosynthetic process2.50E-02
162GO:0006814: sodium ion transport2.64E-02
163GO:0009749: response to glucose2.77E-02
164GO:0009791: post-embryonic development2.77E-02
165GO:0000302: response to reactive oxygen species2.91E-02
166GO:0080156: mitochondrial mRNA modification2.91E-02
167GO:0009790: embryo development2.91E-02
168GO:1901657: glycosyl compound metabolic process3.19E-02
169GO:0071281: cellular response to iron ion3.19E-02
170GO:0046686: response to cadmium ion3.20E-02
171GO:0006310: DNA recombination3.34E-02
172GO:0010150: leaf senescence3.43E-02
173GO:0010286: heat acclimation3.48E-02
174GO:0051607: defense response to virus3.63E-02
175GO:0001666: response to hypoxia3.78E-02
176GO:0006351: transcription, DNA-templated3.85E-02
177GO:0009816: defense response to bacterium, incompatible interaction3.93E-02
178GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.93E-02
179GO:0016567: protein ubiquitination4.00E-02
180GO:0009617: response to bacterium4.09E-02
181GO:0009627: systemic acquired resistance4.09E-02
182GO:0010468: regulation of gene expression4.09E-02
183GO:0015995: chlorophyll biosynthetic process4.25E-02
184GO:0042742: defense response to bacterium4.49E-02
185GO:0030244: cellulose biosynthetic process4.57E-02
186GO:0009817: defense response to fungus, incompatible interaction4.57E-02
187GO:0048481: plant ovule development4.57E-02
188GO:0010311: lateral root formation4.73E-02
189GO:0009834: plant-type secondary cell wall biogenesis4.89E-02
RankGO TermAdjusted P value
1GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity0.00E+00
2GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity0.00E+00
3GO:0047350: glucuronate-1-phosphate uridylyltransferase activity0.00E+00
4GO:0080123: jasmonate-amino synthetase activity0.00E+00
5GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
6GO:0010857: calcium-dependent protein kinase activity0.00E+00
7GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity0.00E+00
8GO:0070566: adenylyltransferase activity0.00E+00
9GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity0.00E+00
10GO:0008419: RNA lariat debranching enzyme activity0.00E+00
11GO:0016629: 12-oxophytodienoate reductase activity3.89E-06
12GO:0016301: kinase activity6.05E-06
13GO:0004674: protein serine/threonine kinase activity1.13E-05
14GO:0005516: calmodulin binding3.99E-05
15GO:0009922: fatty acid elongase activity8.85E-05
16GO:0052631: sphingolipid delta-8 desaturase activity2.92E-04
17GO:0090440: abscisic acid transporter activity2.92E-04
18GO:0004348: glucosylceramidase activity2.92E-04
19GO:0090422: thiamine pyrophosphate transporter activity2.92E-04
20GO:0005524: ATP binding5.95E-04
21GO:0004103: choline kinase activity6.40E-04
22GO:0008883: glutamyl-tRNA reductase activity6.40E-04
23GO:0001047: core promoter binding6.40E-04
24GO:0042389: omega-3 fatty acid desaturase activity6.40E-04
25GO:0017040: ceramidase activity6.40E-04
26GO:0003839: gamma-glutamylcyclotransferase activity6.40E-04
27GO:0019888: protein phosphatase regulator activity8.88E-04
28GO:0005388: calcium-transporting ATPase activity8.88E-04
29GO:0046423: allene-oxide cyclase activity1.04E-03
30GO:0004383: guanylate cyclase activity1.04E-03
31GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.04E-03
32GO:0047274: galactinol-sucrose galactosyltransferase activity1.04E-03
33GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.23E-03
34GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.24E-03
35GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.24E-03
36GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.24E-03
37GO:0043565: sequence-specific DNA binding1.36E-03
38GO:0005432: calcium:sodium antiporter activity1.48E-03
39GO:0004351: glutamate decarboxylase activity1.48E-03
40GO:0001653: peptide receptor activity1.48E-03
41GO:0043015: gamma-tubulin binding1.99E-03
42GO:0080122: AMP transmembrane transporter activity2.54E-03
43GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.54E-03
44GO:0004356: glutamate-ammonia ligase activity2.54E-03
45GO:0031625: ubiquitin protein ligase binding2.55E-03
46GO:0010181: FMN binding2.91E-03
47GO:0004672: protein kinase activity3.39E-03
48GO:0005347: ATP transmembrane transporter activity3.77E-03
49GO:0051020: GTPase binding3.77E-03
50GO:0015217: ADP transmembrane transporter activity3.77E-03
51GO:0019899: enzyme binding4.45E-03
52GO:0016621: cinnamoyl-CoA reductase activity4.45E-03
53GO:0044212: transcription regulatory region DNA binding4.79E-03
54GO:0015491: cation:cation antiporter activity5.17E-03
55GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.92E-03
56GO:0003677: DNA binding6.53E-03
57GO:0015297: antiporter activity6.63E-03
58GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.28E-03
59GO:0030246: carbohydrate binding7.44E-03
60GO:0004713: protein tyrosine kinase activity8.40E-03
61GO:0004842: ubiquitin-protein transferase activity9.01E-03
62GO:0005315: inorganic phosphate transmembrane transporter activity1.12E-02
63GO:0005262: calcium channel activity1.12E-02
64GO:0043621: protein self-association1.12E-02
65GO:0015114: phosphate ion transmembrane transporter activity1.12E-02
66GO:0000175: 3'-5'-exoribonuclease activity1.12E-02
67GO:0051087: chaperone binding1.65E-02
68GO:0004540: ribonuclease activity1.76E-02
69GO:0004707: MAP kinase activity1.76E-02
70GO:0008514: organic anion transmembrane transporter activity2.12E-02
71GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.41E-02
72GO:0050662: coenzyme binding2.64E-02
73GO:0004518: nuclease activity3.05E-02
74GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.48E-02
75GO:0016413: O-acetyltransferase activity3.63E-02
76GO:0009931: calcium-dependent protein serine/threonine kinase activity4.09E-02
77GO:0004004: ATP-dependent RNA helicase activity4.25E-02
78GO:0004683: calmodulin-dependent protein kinase activity4.25E-02
79GO:0102483: scopolin beta-glucosidase activity4.25E-02
80GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.41E-02
81GO:0005096: GTPase activator activity4.73E-02
82GO:0015238: drug transmembrane transporter activity4.73E-02
RankGO TermAdjusted P value
1GO:0032039: integrator complex0.00E+00
2GO:0042170: plastid membrane6.40E-04
3GO:0000159: protein phosphatase type 2A complex6.86E-04
4GO:0005886: plasma membrane8.48E-04
5GO:0005768: endosome1.16E-03
6GO:0000178: exosome (RNase complex)2.54E-03
7GO:0031463: Cul3-RING ubiquitin ligase complex3.14E-03
8GO:0030173: integral component of Golgi membrane3.77E-03
9GO:0005778: peroxisomal membrane4.30E-03
10GO:0005634: nucleus7.53E-03
11GO:0015030: Cajal body7.54E-03
12GO:0016604: nuclear body7.54E-03
13GO:0031902: late endosome membrane9.49E-03
14GO:0016021: integral component of membrane1.14E-02
15GO:0010008: endosome membrane1.70E-02
16GO:0000790: nuclear chromatin2.25E-02
17GO:0030136: clathrin-coated vesicle2.25E-02
18GO:0005743: mitochondrial inner membrane2.41E-02
19GO:0005770: late endosome2.50E-02
20GO:0043231: intracellular membrane-bounded organelle2.98E-02
21GO:0005802: trans-Golgi network3.20E-02
22GO:0032580: Golgi cisterna membrane3.34E-02
23GO:0000932: P-body3.78E-02
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Gene type



Gene DE type