co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0055114: oxidation-reduction process	6.18E-05
4	GO:0042371: vitamin K biosynthetic process	1.06E-04
5	GO:0006949: syncytium formation	1.41E-04
6	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.04E-04
7	GO:0009650: UV protection	5.92E-04
8	GO:0009765: photosynthesis, light harvesting	7.86E-04
9	GO:0016123: xanthophyll biosynthetic process	9.92E-04
10	GO:0009616: virus induced gene silencing	9.92E-04
11	GO:0006656: phosphatidylcholine biosynthetic process	9.92E-04
12	GO:0016558: protein import into peroxisome matrix	9.92E-04
13	GO:0009828: plant-type cell wall loosening	1.01E-03
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.21E-03
15	GO:0035194: posttranscriptional gene silencing by RNA	1.21E-03
16	GO:0000741: karyogamy	1.21E-03
17	GO:0015995: chlorophyll biosynthetic process	1.40E-03
18	GO:0010189: vitamin E biosynthetic process	1.45E-03
19	GO:0009733: response to auxin	1.50E-03
20	GO:0009645: response to low light intensity stimulus	1.70E-03
21	GO:0009769: photosynthesis, light harvesting in photosystem II	1.70E-03
22	GO:0030091: protein repair	1.97E-03
23	GO:0009744: response to sucrose	2.49E-03
24	GO:0000373: Group II intron splicing	2.53E-03
25	GO:0009051: pentose-phosphate shunt, oxidative branch	2.53E-03
26	GO:0080167: response to karrikin	2.63E-03
27	GO:0009638: phototropism	2.84E-03
28	GO:0009098: leucine biosynthetic process	2.84E-03
29	GO:0009664: plant-type cell wall organization	3.12E-03
30	GO:0009585: red, far-red light phototransduction	3.35E-03
31	GO:0009750: response to fructose	3.47E-03
32	GO:0009773: photosynthetic electron transport in photosystem I	3.47E-03
33	GO:0010628: positive regulation of gene expression	4.16E-03
34	GO:0006006: glucose metabolic process	4.16E-03
35	GO:0009725: response to hormone	4.16E-03
36	GO:0009767: photosynthetic electron transport chain	4.16E-03
37	GO:0006863: purine nucleobase transport	5.26E-03
38	GO:0006833: water transport	5.26E-03
39	GO:0006979: response to oxidative stress	5.35E-03
40	GO:0080147: root hair cell development	5.65E-03
41	GO:0009768: photosynthesis, light harvesting in photosystem I	6.05E-03
42	GO:0007017: microtubule-based process	6.05E-03
43	GO:0009269: response to desiccation	6.46E-03
44	GO:0080092: regulation of pollen tube growth	6.87E-03
45	GO:0009411: response to UV	7.30E-03
46	GO:0040008: regulation of growth	7.82E-03
47	GO:0016117: carotenoid biosynthetic process	8.19E-03
48	GO:0009451: RNA modification	8.39E-03
49	GO:0034220: ion transmembrane transport	8.64E-03
50	GO:0006606: protein import into nucleus	8.64E-03
51	GO:0009416: response to light stimulus	8.91E-03
52	GO:0010197: polar nucleus fusion	9.10E-03
53	GO:0048868: pollen tube development	9.10E-03
54	GO:0006810: transport	9.47E-03
55	GO:0005975: carbohydrate metabolic process	9.95E-03
56	GO:0009749: response to glucose	1.01E-02
57	GO:0008654: phospholipid biosynthetic process	1.01E-02
58	GO:0006635: fatty acid beta-oxidation	1.06E-02
59	GO:0010193: response to ozone	1.06E-02
60	GO:0019761: glucosinolate biosynthetic process	1.11E-02
61	GO:0009826: unidimensional cell growth	1.22E-02
62	GO:0010411: xyloglucan metabolic process	1.54E-02
63	GO:0018298: protein-chromophore linkage	1.65E-02
64	GO:0010218: response to far red light	1.77E-02
65	GO:0006811: ion transport	1.77E-02
66	GO:0015979: photosynthesis	1.80E-02
67	GO:0009637: response to blue light	1.95E-02
68	GO:0010114: response to red light	2.34E-02
69	GO:0042546: cell wall biogenesis	2.41E-02
70	GO:0009644: response to high light intensity	2.47E-02
71	GO:0010224: response to UV-B	2.97E-02
72	GO:0009734: auxin-activated signaling pathway	3.28E-02
73	GO:0009740: gibberellic acid mediated signaling pathway	3.56E-02
74	GO:0009553: embryo sac development	3.64E-02
75	GO:0046686: response to cadmium ion	3.78E-02
76	GO:0042744: hydrogen peroxide catabolic process	4.78E-02
77	GO:0009790: embryo development	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0042623: ATPase activity, coupled	0.00E+00
4	GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	0.00E+00
5	GO:0016491: oxidoreductase activity	1.30E-05
6	GO:0004451: isocitrate lyase activity	1.06E-04
7	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.65E-04
8	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.48E-04
9	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.12E-04
10	GO:0003861: 3-isopropylmalate dehydratase activity	4.12E-04
11	GO:0004345: glucose-6-phosphate dehydrogenase activity	7.86E-04
12	GO:0016836: hydro-lyase activity	7.86E-04
13	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.06E-04
14	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	9.92E-04
15	GO:0004462: lactoylglutathione lyase activity	1.21E-03
16	GO:0004605: phosphatidate cytidylyltransferase activity	1.21E-03
17	GO:0000293: ferric-chelate reductase activity	1.21E-03
18	GO:0042578: phosphoric ester hydrolase activity	1.21E-03
19	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.45E-03
20	GO:0003724: RNA helicase activity	2.24E-03
21	GO:0008081: phosphoric diester hydrolase activity	4.16E-03
22	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.52E-03
23	GO:0008146: sulfotransferase activity	4.88E-03
24	GO:0031409: pigment binding	5.26E-03
25	GO:0005345: purine nucleobase transmembrane transporter activity	6.05E-03
26	GO:0003727: single-stranded RNA binding	7.74E-03
27	GO:0004872: receptor activity	1.01E-02
28	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.06E-02
29	GO:0048038: quinone binding	1.06E-02
30	GO:0008483: transaminase activity	1.26E-02
31	GO:0015250: water channel activity	1.37E-02
32	GO:0016168: chlorophyll binding	1.42E-02
33	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.54E-02
34	GO:0004497: monooxygenase activity	1.58E-02
35	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.59E-02
36	GO:0005506: iron ion binding	2.14E-02
37	GO:0050661: NADP binding	2.14E-02
38	GO:0051537: 2 iron, 2 sulfur cluster binding	2.47E-02
39	GO:0004519: endonuclease activity	2.54E-02
40	GO:0020037: heme binding	3.84E-02
41	GO:0003723: RNA binding	4.23E-02
42	GO:0019843: rRNA binding	4.36E-02
43	GO:0016829: lyase activity	4.61E-02
44	GO:0008565: protein transporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.40E-07
2	GO:0009535: chloroplast thylakoid membrane	1.33E-06
3	GO:0030286: dynein complex	7.86E-04
4	GO:0009517: PSII associated light-harvesting complex II	7.86E-04
5	GO:0009538: photosystem I reaction center	1.97E-03
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.53E-03
7	GO:0016324: apical plasma membrane	3.15E-03
8	GO:0030095: chloroplast photosystem II	4.52E-03
9	GO:0009706: chloroplast inner membrane	4.75E-03
10	GO:0030076: light-harvesting complex	4.88E-03
11	GO:0010287: plastoglobule	5.63E-03
12	GO:0009543: chloroplast thylakoid lumen	5.94E-03
13	GO:0042651: thylakoid membrane	6.05E-03
14	GO:0009522: photosystem I	9.58E-03
15	GO:0009523: photosystem II	1.01E-02
16	GO:0009579: thylakoid	1.12E-02
17	GO:0005778: peroxisomal membrane	1.26E-02
18	GO:0016020: membrane	1.66E-02
19	GO:0031977: thylakoid lumen	2.21E-02
20	GO:0009505: plant-type cell wall	2.89E-02
21	GO:0009570: chloroplast stroma	3.18E-02
22	GO:0005618: cell wall	4.13E-02
23	GO:0009534: chloroplast thylakoid	4.97E-02