Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50685

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0015882: L-ascorbic acid transport0.00E+00
3GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
4GO:0006114: glycerol biosynthetic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
7GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
8GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
9GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
10GO:1901918: negative regulation of exoribonuclease activity0.00E+00
11GO:0009715: chalcone biosynthetic process0.00E+00
12GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
13GO:0015979: photosynthesis8.40E-19
14GO:0018298: protein-chromophore linkage6.80E-13
15GO:0009768: photosynthesis, light harvesting in photosystem I5.18E-10
16GO:0090391: granum assembly1.52E-08
17GO:1902326: positive regulation of chlorophyll biosynthetic process2.51E-06
18GO:0009645: response to low light intensity stimulus2.72E-06
19GO:0010196: nonphotochemical quenching2.72E-06
20GO:0009642: response to light intensity4.15E-06
21GO:0010114: response to red light7.96E-06
22GO:0010206: photosystem II repair8.44E-06
23GO:0009644: response to high light intensity9.69E-06
24GO:0009773: photosynthetic electron transport in photosystem I1.94E-05
25GO:0006790: sulfur compound metabolic process2.45E-05
26GO:0010207: photosystem II assembly3.72E-05
27GO:0019253: reductive pentose-phosphate cycle3.72E-05
28GO:0006021: inositol biosynthetic process3.78E-05
29GO:0009765: photosynthesis, light harvesting3.78E-05
30GO:0046854: phosphatidylinositol phosphorylation4.48E-05
31GO:0010218: response to far red light5.72E-05
32GO:0009637: response to blue light7.43E-05
33GO:0046855: inositol phosphate dephosphorylation8.88E-05
34GO:0042549: photosystem II stabilization8.88E-05
35GO:0009769: photosynthesis, light harvesting in photosystem II1.62E-04
36GO:0048564: photosystem I assembly2.06E-04
37GO:0071277: cellular response to calcium ion2.32E-04
38GO:0000481: maturation of 5S rRNA2.32E-04
39GO:0010028: xanthophyll cycle2.32E-04
40GO:0034337: RNA folding2.32E-04
41GO:0009443: pyridoxal 5'-phosphate salvage2.32E-04
42GO:0009657: plastid organization2.55E-04
43GO:0010027: thylakoid membrane organization3.89E-04
44GO:0043085: positive regulation of catalytic activity4.97E-04
45GO:0019684: photosynthesis, light reaction4.97E-04
46GO:0016311: dephosphorylation5.13E-04
47GO:0000256: allantoin catabolic process5.15E-04
48GO:0006729: tetrahydrobiopterin biosynthetic process5.15E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process5.15E-04
50GO:0010275: NAD(P)H dehydrogenase complex assembly5.15E-04
51GO:0009629: response to gravity5.15E-04
52GO:0006006: glucose metabolic process6.45E-04
53GO:0034599: cellular response to oxidative stress7.81E-04
54GO:0010136: ureide catabolic process8.37E-04
55GO:0071492: cellular response to UV-A8.37E-04
56GO:0005977: glycogen metabolic process8.37E-04
57GO:0006000: fructose metabolic process8.37E-04
58GO:0042823: pyridoxal phosphate biosynthetic process1.19E-03
59GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.19E-03
60GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.19E-03
61GO:0006020: inositol metabolic process1.19E-03
62GO:0071484: cellular response to light intensity1.19E-03
63GO:0009102: biotin biosynthetic process1.19E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch1.19E-03
65GO:0006145: purine nucleobase catabolic process1.19E-03
66GO:0009269: response to desiccation1.20E-03
67GO:0006546: glycine catabolic process1.59E-03
68GO:0010021: amylopectin biosynthetic process1.59E-03
69GO:0071486: cellular response to high light intensity1.59E-03
70GO:0006109: regulation of carbohydrate metabolic process1.59E-03
71GO:0015994: chlorophyll metabolic process1.59E-03
72GO:0006662: glycerol ether metabolic process1.95E-03
73GO:0016558: protein import into peroxisome matrix2.03E-03
74GO:0006564: L-serine biosynthetic process2.03E-03
75GO:0010236: plastoquinone biosynthetic process2.03E-03
76GO:0019252: starch biosynthetic process2.24E-03
77GO:0055114: oxidation-reduction process2.50E-03
78GO:0009117: nucleotide metabolic process2.50E-03
79GO:0050665: hydrogen peroxide biosynthetic process2.50E-03
80GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.50E-03
81GO:0048280: vesicle fusion with Golgi apparatus3.00E-03
82GO:0010189: vitamin E biosynthetic process3.00E-03
83GO:0009854: oxidative photosynthetic carbon pathway3.00E-03
84GO:0071470: cellular response to osmotic stress3.00E-03
85GO:0055085: transmembrane transport3.73E-03
86GO:0009627: systemic acquired resistance3.86E-03
87GO:0015995: chlorophyll biosynthetic process4.07E-03
88GO:0009704: de-etiolation4.10E-03
89GO:0032508: DNA duplex unwinding4.10E-03
90GO:0031540: regulation of anthocyanin biosynthetic process4.10E-03
91GO:0016559: peroxisome fission4.10E-03
92GO:0009409: response to cold4.47E-03
93GO:0032544: plastid translation4.70E-03
94GO:0017004: cytochrome complex assembly4.70E-03
95GO:0006002: fructose 6-phosphate metabolic process4.70E-03
96GO:0009813: flavonoid biosynthetic process4.73E-03
97GO:0090333: regulation of stomatal closure5.32E-03
98GO:0006754: ATP biosynthetic process5.32E-03
99GO:0098656: anion transmembrane transport5.32E-03
100GO:0009245: lipid A biosynthetic process5.32E-03
101GO:0009821: alkaloid biosynthetic process5.32E-03
102GO:0006949: syncytium formation6.65E-03
103GO:0006896: Golgi to vacuole transport6.65E-03
104GO:0009089: lysine biosynthetic process via diaminopimelate7.35E-03
105GO:0006415: translational termination7.35E-03
106GO:0009658: chloroplast organization8.01E-03
107GO:0005983: starch catabolic process8.08E-03
108GO:0009735: response to cytokinin8.37E-03
109GO:0006094: gluconeogenesis8.84E-03
110GO:0005986: sucrose biosynthetic process8.84E-03
111GO:0009416: response to light stimulus9.58E-03
112GO:0010020: chloroplast fission9.62E-03
113GO:0010224: response to UV-B1.03E-02
114GO:0019853: L-ascorbic acid biosynthetic process1.04E-02
115GO:0080167: response to karrikin1.05E-02
116GO:0006833: water transport1.13E-02
117GO:0006096: glycolytic process1.18E-02
118GO:0080147: root hair cell development1.21E-02
119GO:0007017: microtubule-based process1.30E-02
120GO:0019953: sexual reproduction1.30E-02
121GO:0008299: isoprenoid biosynthetic process1.30E-02
122GO:0019915: lipid storage1.39E-02
123GO:0061077: chaperone-mediated protein folding1.39E-02
124GO:0006396: RNA processing1.46E-02
125GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.57E-02
126GO:0032259: methylation1.64E-02
127GO:0006810: transport1.64E-02
128GO:0009561: megagametogenesis1.67E-02
129GO:0042147: retrograde transport, endosome to Golgi1.77E-02
130GO:0042335: cuticle development1.87E-02
131GO:0034220: ion transmembrane transport1.87E-02
132GO:0000413: protein peptidyl-prolyl isomerization1.87E-02
133GO:0048868: pollen tube development1.97E-02
134GO:0006623: protein targeting to vacuole2.18E-02
135GO:0009791: post-embryonic development2.18E-02
136GO:0006413: translational initiation2.29E-02
137GO:0010193: response to ozone2.29E-02
138GO:0006891: intra-Golgi vesicle-mediated transport2.29E-02
139GO:0006635: fatty acid beta-oxidation2.29E-02
140GO:0071554: cell wall organization or biogenesis2.29E-02
141GO:0007623: circadian rhythm2.46E-02
142GO:0009828: plant-type cell wall loosening2.62E-02
143GO:0042128: nitrate assimilation3.22E-02
144GO:0006888: ER to Golgi vesicle-mediated transport3.34E-02
145GO:0009793: embryo development ending in seed dormancy3.51E-02
146GO:0009817: defense response to fungus, incompatible interaction3.59E-02
147GO:0009611: response to wounding3.64E-02
148GO:0042254: ribosome biogenesis3.86E-02
149GO:0007568: aging3.98E-02
150GO:0016051: carbohydrate biosynthetic process4.25E-02
151GO:0009853: photorespiration4.25E-02
152GO:0006631: fatty acid metabolic process4.81E-02
RankGO TermAdjusted P value
1GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0042623: ATPase activity, coupled0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0015229: L-ascorbic acid transporter activity0.00E+00
8GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
9GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0050281: serine-glyoxylate transaminase activity0.00E+00
12GO:0004076: biotin synthase activity0.00E+00
13GO:0043136: glycerol-3-phosphatase activity0.00E+00
14GO:0000121: glycerol-1-phosphatase activity0.00E+00
15GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0016210: naringenin-chalcone synthase activity0.00E+00
18GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
19GO:0016168: chlorophyll binding3.35E-15
20GO:0031409: pigment binding2.49E-10
21GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.68E-06
22GO:0052833: inositol monophosphate 4-phosphatase activity2.51E-06
23GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity2.51E-06
24GO:0052832: inositol monophosphate 3-phosphatase activity2.51E-06
25GO:0008934: inositol monophosphate 1-phosphatase activity2.51E-06
26GO:0022891: substrate-specific transmembrane transporter activity4.10E-06
27GO:0070402: NADPH binding9.11E-06
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.17E-05
29GO:0043495: protein anchor3.78E-05
30GO:0005528: FK506 binding6.28E-05
31GO:0019899: enzyme binding1.62E-04
32GO:0051287: NAD binding1.66E-04
33GO:0019203: carbohydrate phosphatase activity2.32E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.32E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity2.32E-04
36GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.32E-04
37GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.32E-04
38GO:0050308: sugar-phosphatase activity2.32E-04
39GO:0008047: enzyme activator activity4.30E-04
40GO:0019172: glyoxalase III activity5.15E-04
41GO:0019156: isoamylase activity5.15E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.15E-04
43GO:0047746: chlorophyllase activity5.15E-04
44GO:0004617: phosphoglycerate dehydrogenase activity5.15E-04
45GO:0004047: aminomethyltransferase activity5.15E-04
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.15E-04
47GO:0031072: heat shock protein binding6.45E-04
48GO:0004751: ribose-5-phosphate isomerase activity8.37E-04
49GO:0030267: glyoxylate reductase (NADP) activity8.37E-04
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.37E-04
51GO:0005504: fatty acid binding8.37E-04
52GO:0046872: metal ion binding1.12E-03
53GO:0042802: identical protein binding1.18E-03
54GO:0004792: thiosulfate sulfurtransferase activity1.19E-03
55GO:0016149: translation release factor activity, codon specific1.19E-03
56GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.19E-03
57GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.19E-03
58GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.19E-03
59GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.19E-03
60GO:0035529: NADH pyrophosphatase activity1.19E-03
61GO:0045430: chalcone isomerase activity1.59E-03
62GO:0008891: glycolate oxidase activity1.59E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.59E-03
64GO:0008453: alanine-glyoxylate transaminase activity1.59E-03
65GO:0047134: protein-disulfide reductase activity1.67E-03
66GO:0004791: thioredoxin-disulfide reductase activity2.09E-03
67GO:0016853: isomerase activity2.09E-03
68GO:0031177: phosphopantetheine binding2.50E-03
69GO:0004556: alpha-amylase activity2.50E-03
70GO:0042578: phosphoric ester hydrolase activity2.50E-03
71GO:0004462: lactoylglutathione lyase activity2.50E-03
72GO:0016462: pyrophosphatase activity2.50E-03
73GO:2001070: starch binding2.50E-03
74GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.73E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.00E-03
76GO:0000035: acyl binding3.00E-03
77GO:0019843: rRNA binding3.05E-03
78GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
79GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.10E-03
80GO:0008135: translation factor activity, RNA binding4.70E-03
81GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.32E-03
82GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.32E-03
83GO:0003747: translation release factor activity5.32E-03
84GO:0016844: strictosidine synthase activity5.97E-03
85GO:0003993: acid phosphatase activity5.97E-03
86GO:0050661: NADP binding6.50E-03
87GO:0005089: Rho guanyl-nucleotide exchange factor activity7.35E-03
88GO:0051537: 2 iron, 2 sulfur cluster binding7.96E-03
89GO:0005198: structural molecule activity8.27E-03
90GO:0008081: phosphoric diester hydrolase activity8.84E-03
91GO:0005315: inorganic phosphate transmembrane transporter activity8.84E-03
92GO:0004565: beta-galactosidase activity8.84E-03
93GO:0008266: poly(U) RNA binding9.62E-03
94GO:0004857: enzyme inhibitor activity1.21E-02
95GO:0043424: protein histidine kinase binding1.30E-02
96GO:0051082: unfolded protein binding1.42E-02
97GO:0015035: protein disulfide oxidoreductase activity1.46E-02
98GO:0003727: single-stranded RNA binding1.67E-02
99GO:0008514: organic anion transmembrane transporter activity1.67E-02
100GO:0003756: protein disulfide isomerase activity1.67E-02
101GO:0003924: GTPase activity1.73E-02
102GO:0010181: FMN binding2.07E-02
103GO:0048038: quinone binding2.29E-02
104GO:0005509: calcium ion binding2.44E-02
105GO:0008483: transaminase activity2.74E-02
106GO:0016597: amino acid binding2.86E-02
107GO:0016413: O-acetyltransferase activity2.86E-02
108GO:0003743: translation initiation factor activity2.87E-02
109GO:0015250: water channel activity2.98E-02
110GO:0016787: hydrolase activity3.09E-02
111GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.47E-02
112GO:0008168: methyltransferase activity3.65E-02
113GO:0015238: drug transmembrane transporter activity3.72E-02
114GO:0030145: manganese ion binding3.98E-02
115GO:0016491: oxidoreductase activity4.11E-02
116GO:0003746: translation elongation factor activity4.25E-02
117GO:0000149: SNARE binding4.53E-02
118GO:0051539: 4 iron, 4 sulfur cluster binding4.67E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast1.04E-59
4GO:0009535: chloroplast thylakoid membrane2.57E-56
5GO:0009534: chloroplast thylakoid4.32E-37
6GO:0009579: thylakoid9.43E-28
7GO:0009941: chloroplast envelope7.96E-26
8GO:0009543: chloroplast thylakoid lumen5.22E-23
9GO:0009570: chloroplast stroma3.09E-19
10GO:0009523: photosystem II1.90E-14
11GO:0031977: thylakoid lumen1.03E-13
12GO:0030095: chloroplast photosystem II1.10E-10
13GO:0010287: plastoglobule3.68E-10
14GO:0009522: photosystem I2.63E-07
15GO:0030076: light-harvesting complex1.06E-06
16GO:0009654: photosystem II oxygen evolving complex2.21E-06
17GO:0009538: photosystem I reaction center4.15E-06
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.44E-06
19GO:0019898: extrinsic component of membrane1.13E-05
20GO:0009517: PSII associated light-harvesting complex II3.78E-05
21GO:0009782: photosystem I antenna complex2.32E-04
22GO:0009783: photosystem II antenna complex2.32E-04
23GO:0048046: apoplast5.23E-04
24GO:0042651: thylakoid membrane1.09E-03
25GO:0016020: membrane1.29E-03
26GO:0030286: dynein complex1.59E-03
27GO:0009706: chloroplast inner membrane2.29E-03
28GO:0005778: peroxisomal membrane3.08E-03
29GO:0009533: chloroplast stromal thylakoid3.54E-03
30GO:0012507: ER to Golgi transport vesicle membrane4.10E-03
31GO:0012511: monolayer-surrounded lipid storage body7.35E-03
32GO:0032040: small-subunit processome8.08E-03
33GO:0031969: chloroplast membrane1.05E-02
34GO:0016021: integral component of membrane1.78E-02
35GO:0005623: cell1.83E-02
36GO:0010319: stromule2.74E-02
37GO:0022626: cytosolic ribosome3.35E-02
38GO:0009707: chloroplast outer membrane3.59E-02
39GO:0009536: plastid3.71E-02
40GO:0015934: large ribosomal subunit3.98E-02
41GO:0005777: peroxisome4.19E-02
42GO:0031902: late endosome membrane4.81E-02
43GO:0031201: SNARE complex4.81E-02
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Gene type



Gene DE type