GO Enrichment Analysis of Co-expressed Genes with
AT3G49560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045747: positive regulation of Notch signaling pathway | 0.00E+00 |
| 2 | GO:0061614: pri-miRNA transcription from RNA polymerase II promoter | 0.00E+00 |
| 3 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 4 | GO:0046085: adenosine metabolic process | 0.00E+00 |
| 5 | GO:0034053: modulation by symbiont of host defense-related programmed cell death | 0.00E+00 |
| 6 | GO:0006720: isoprenoid metabolic process | 0.00E+00 |
| 7 | GO:0048870: cell motility | 0.00E+00 |
| 8 | GO:0015822: ornithine transport | 0.00E+00 |
| 9 | GO:0036172: thiamine salvage | 0.00E+00 |
| 10 | GO:0009117: nucleotide metabolic process | 5.89E-05 |
| 11 | GO:0000066: mitochondrial ornithine transport | 1.80E-04 |
| 12 | GO:0016487: farnesol metabolic process | 1.80E-04 |
| 13 | GO:0016031: tRNA import into mitochondrion | 1.80E-04 |
| 14 | GO:0043407: negative regulation of MAP kinase activity | 1.80E-04 |
| 15 | GO:0007163: establishment or maintenance of cell polarity | 4.05E-04 |
| 16 | GO:0016122: xanthophyll metabolic process | 4.05E-04 |
| 17 | GO:2000071: regulation of defense response by callose deposition | 4.05E-04 |
| 18 | GO:0034051: negative regulation of plant-type hypersensitive response | 6.61E-04 |
| 19 | GO:0009150: purine ribonucleotide metabolic process | 6.61E-04 |
| 20 | GO:0071492: cellular response to UV-A | 6.61E-04 |
| 21 | GO:0006760: folic acid-containing compound metabolic process | 6.61E-04 |
| 22 | GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation | 6.61E-04 |
| 23 | GO:0009647: skotomorphogenesis | 9.45E-04 |
| 24 | GO:0009399: nitrogen fixation | 9.45E-04 |
| 25 | GO:0009963: positive regulation of flavonoid biosynthetic process | 9.45E-04 |
| 26 | GO:0034613: cellular protein localization | 1.25E-03 |
| 27 | GO:0006542: glutamine biosynthetic process | 1.25E-03 |
| 28 | GO:1900864: mitochondrial RNA modification | 1.25E-03 |
| 29 | GO:0071486: cellular response to high light intensity | 1.25E-03 |
| 30 | GO:0009765: photosynthesis, light harvesting | 1.25E-03 |
| 31 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.25E-03 |
| 32 | GO:0009649: entrainment of circadian clock | 1.25E-03 |
| 33 | GO:0008295: spermidine biosynthetic process | 1.25E-03 |
| 34 | GO:0030041: actin filament polymerization | 1.59E-03 |
| 35 | GO:0010117: photoprotection | 1.59E-03 |
| 36 | GO:0046283: anthocyanin-containing compound metabolic process | 1.59E-03 |
| 37 | GO:0009229: thiamine diphosphate biosynthetic process | 1.59E-03 |
| 38 | GO:0006544: glycine metabolic process | 1.59E-03 |
| 39 | GO:0042793: transcription from plastid promoter | 1.96E-03 |
| 40 | GO:0010190: cytochrome b6f complex assembly | 1.96E-03 |
| 41 | GO:0033365: protein localization to organelle | 1.96E-03 |
| 42 | GO:0006563: L-serine metabolic process | 1.96E-03 |
| 43 | GO:0048827: phyllome development | 1.96E-03 |
| 44 | GO:0016070: RNA metabolic process | 1.96E-03 |
| 45 | GO:0031053: primary miRNA processing | 1.96E-03 |
| 46 | GO:0007035: vacuolar acidification | 1.96E-03 |
| 47 | GO:0009228: thiamine biosynthetic process | 1.96E-03 |
| 48 | GO:0080036: regulation of cytokinin-activated signaling pathway | 2.35E-03 |
| 49 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 2.35E-03 |
| 50 | GO:0000054: ribosomal subunit export from nucleus | 2.35E-03 |
| 51 | GO:0009704: de-etiolation | 3.21E-03 |
| 52 | GO:0000028: ribosomal small subunit assembly | 3.21E-03 |
| 53 | GO:0045010: actin nucleation | 3.21E-03 |
| 54 | GO:0045292: mRNA cis splicing, via spliceosome | 3.21E-03 |
| 55 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.21E-03 |
| 56 | GO:0019430: removal of superoxide radicals | 3.67E-03 |
| 57 | GO:0010099: regulation of photomorphogenesis | 3.67E-03 |
| 58 | GO:0009853: photorespiration | 3.98E-03 |
| 59 | GO:0000902: cell morphogenesis | 4.15E-03 |
| 60 | GO:0098656: anion transmembrane transport | 4.15E-03 |
| 61 | GO:0010267: production of ta-siRNAs involved in RNA interference | 4.65E-03 |
| 62 | GO:0007346: regulation of mitotic cell cycle | 4.65E-03 |
| 63 | GO:0035999: tetrahydrofolate interconversion | 4.65E-03 |
| 64 | GO:1900865: chloroplast RNA modification | 4.65E-03 |
| 65 | GO:0009688: abscisic acid biosynthetic process | 5.18E-03 |
| 66 | GO:0009641: shade avoidance | 5.18E-03 |
| 67 | GO:0009682: induced systemic resistance | 5.72E-03 |
| 68 | GO:0010152: pollen maturation | 6.28E-03 |
| 69 | GO:0006790: sulfur compound metabolic process | 6.28E-03 |
| 70 | GO:0010229: inflorescence development | 6.86E-03 |
| 71 | GO:0009585: red, far-red light phototransduction | 6.90E-03 |
| 72 | GO:0048440: carpel development | 7.46E-03 |
| 73 | GO:0010039: response to iron ion | 8.08E-03 |
| 74 | GO:0006406: mRNA export from nucleus | 9.37E-03 |
| 75 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.37E-03 |
| 76 | GO:0010431: seed maturation | 1.07E-02 |
| 77 | GO:0016226: iron-sulfur cluster assembly | 1.14E-02 |
| 78 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.14E-02 |
| 79 | GO:0007005: mitochondrion organization | 1.14E-02 |
| 80 | GO:0042147: retrograde transport, endosome to Golgi | 1.37E-02 |
| 81 | GO:0010118: stomatal movement | 1.44E-02 |
| 82 | GO:0006606: protein import into nucleus | 1.44E-02 |
| 83 | GO:0015991: ATP hydrolysis coupled proton transport | 1.44E-02 |
| 84 | GO:0008654: phospholipid biosynthetic process | 1.68E-02 |
| 85 | GO:0080156: mitochondrial mRNA modification | 1.77E-02 |
| 86 | GO:0002229: defense response to oomycetes | 1.77E-02 |
| 87 | GO:0010193: response to ozone | 1.77E-02 |
| 88 | GO:0031047: gene silencing by RNA | 1.85E-02 |
| 89 | GO:0030163: protein catabolic process | 1.94E-02 |
| 90 | GO:0010090: trichome morphogenesis | 1.94E-02 |
| 91 | GO:0035556: intracellular signal transduction | 2.41E-02 |
| 92 | GO:0042128: nitrate assimilation | 2.48E-02 |
| 93 | GO:0048573: photoperiodism, flowering | 2.58E-02 |
| 94 | GO:0009658: chloroplast organization | 2.64E-02 |
| 95 | GO:0000160: phosphorelay signal transduction system | 2.87E-02 |
| 96 | GO:0048527: lateral root development | 3.08E-02 |
| 97 | GO:0010119: regulation of stomatal movement | 3.08E-02 |
| 98 | GO:0009867: jasmonic acid mediated signaling pathway | 3.28E-02 |
| 99 | GO:0034599: cellular response to oxidative stress | 3.39E-02 |
| 100 | GO:0006839: mitochondrial transport | 3.60E-02 |
| 101 | GO:0008283: cell proliferation | 3.93E-02 |
| 102 | GO:0009640: photomorphogenesis | 3.93E-02 |
| 103 | GO:0006886: intracellular protein transport | 4.04E-02 |
| 104 | GO:0000154: rRNA modification | 4.27E-02 |
| 105 | GO:0031347: regulation of defense response | 4.50E-02 |
| 106 | GO:0006281: DNA repair | 4.81E-02 |
| 107 | GO:0009736: cytokinin-activated signaling pathway | 4.86E-02 |
| 108 | GO:0009809: lignin biosynthetic process | 4.86E-02 |
| 109 | GO:0010224: response to UV-B | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047710: bis(5'-adenosyl)-triphosphatase activity | 0.00E+00 |
| 2 | GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity | 0.00E+00 |
| 3 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 4 | GO:0052670: geraniol kinase activity | 0.00E+00 |
| 5 | GO:0052668: farnesol kinase activity | 0.00E+00 |
| 6 | GO:0043530: adenosine 5'-monophosphoramidase activity | 0.00E+00 |
| 7 | GO:0052671: geranylgeraniol kinase activity | 0.00E+00 |
| 8 | GO:0004780: sulfate adenylyltransferase (ADP) activity | 0.00E+00 |
| 9 | GO:0047627: adenylylsulfatase activity | 1.33E-05 |
| 10 | GO:0019707: protein-cysteine S-acyltransferase activity | 1.80E-04 |
| 11 | GO:0033549: MAP kinase phosphatase activity | 1.80E-04 |
| 12 | GO:0004766: spermidine synthase activity | 4.05E-04 |
| 13 | GO:0000064: L-ornithine transmembrane transporter activity | 4.05E-04 |
| 14 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.05E-04 |
| 15 | GO:0003723: RNA binding | 5.74E-04 |
| 16 | GO:0032403: protein complex binding | 6.61E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 6.61E-04 |
| 18 | GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity | 6.61E-04 |
| 19 | GO:0004848: ureidoglycolate hydrolase activity | 6.61E-04 |
| 20 | GO:0005515: protein binding | 8.10E-04 |
| 21 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 9.45E-04 |
| 22 | GO:0000339: RNA cap binding | 9.45E-04 |
| 23 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.25E-03 |
| 24 | GO:0005319: lipid transporter activity | 1.25E-03 |
| 25 | GO:0004372: glycine hydroxymethyltransferase activity | 1.59E-03 |
| 26 | GO:0005496: steroid binding | 1.59E-03 |
| 27 | GO:0004356: glutamate-ammonia ligase activity | 1.59E-03 |
| 28 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.96E-03 |
| 29 | GO:0004784: superoxide dismutase activity | 1.96E-03 |
| 30 | GO:0070300: phosphatidic acid binding | 2.35E-03 |
| 31 | GO:0009927: histidine phosphotransfer kinase activity | 2.35E-03 |
| 32 | GO:0008143: poly(A) binding | 2.77E-03 |
| 33 | GO:0016621: cinnamoyl-CoA reductase activity | 2.77E-03 |
| 34 | GO:0035064: methylated histone binding | 3.21E-03 |
| 35 | GO:0015078: hydrogen ion transmembrane transporter activity | 3.67E-03 |
| 36 | GO:0071949: FAD binding | 4.15E-03 |
| 37 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.15E-03 |
| 38 | GO:0047617: acyl-CoA hydrolase activity | 4.65E-03 |
| 39 | GO:0043621: protein self-association | 5.54E-03 |
| 40 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 5.72E-03 |
| 41 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.86E-03 |
| 42 | GO:0015266: protein channel activity | 6.86E-03 |
| 43 | GO:0004725: protein tyrosine phosphatase activity | 8.71E-03 |
| 44 | GO:0043424: protein histidine kinase binding | 1.00E-02 |
| 45 | GO:0004386: helicase activity | 1.07E-02 |
| 46 | GO:0008514: organic anion transmembrane transporter activity | 1.29E-02 |
| 47 | GO:0015144: carbohydrate transmembrane transporter activity | 1.48E-02 |
| 48 | GO:0003713: transcription coactivator activity | 1.52E-02 |
| 49 | GO:0008080: N-acetyltransferase activity | 1.52E-02 |
| 50 | GO:0050662: coenzyme binding | 1.60E-02 |
| 51 | GO:0005351: sugar:proton symporter activity | 1.67E-02 |
| 52 | GO:0016787: hydrolase activity | 1.67E-02 |
| 53 | GO:0048038: quinone binding | 1.77E-02 |
| 54 | GO:0042802: identical protein binding | 2.17E-02 |
| 55 | GO:0016168: chlorophyll binding | 2.39E-02 |
| 56 | GO:0016491: oxidoreductase activity | 2.41E-02 |
| 57 | GO:0008375: acetylglucosaminyltransferase activity | 2.48E-02 |
| 58 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.77E-02 |
| 59 | GO:0050897: cobalt ion binding | 3.08E-02 |
| 60 | GO:0003697: single-stranded DNA binding | 3.28E-02 |
| 61 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.16E-02 |
| 62 | GO:0005198: structural molecule activity | 4.27E-02 |
| 63 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.19E-07 |
| 2 | GO:0005747: mitochondrial respiratory chain complex I | 1.51E-04 |
| 3 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 1.80E-04 |
| 4 | GO:0005845: mRNA cap binding complex | 1.80E-04 |
| 5 | GO:0000152: nuclear ubiquitin ligase complex | 1.80E-04 |
| 6 | GO:0005680: anaphase-promoting complex | 2.13E-04 |
| 7 | GO:0005846: nuclear cap binding complex | 4.05E-04 |
| 8 | GO:0009536: plastid | 4.85E-04 |
| 9 | GO:0005838: proteasome regulatory particle | 6.61E-04 |
| 10 | GO:0045271: respiratory chain complex I | 7.77E-04 |
| 11 | GO:0042646: plastid nucleoid | 9.45E-04 |
| 12 | GO:0009941: chloroplast envelope | 1.12E-03 |
| 13 | GO:0000445: THO complex part of transcription export complex | 1.25E-03 |
| 14 | GO:0009517: PSII associated light-harvesting complex II | 1.25E-03 |
| 15 | GO:0033179: proton-transporting V-type ATPase, V0 domain | 1.25E-03 |
| 16 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 1.59E-03 |
| 17 | GO:0031209: SCAR complex | 1.96E-03 |
| 18 | GO:0030904: retromer complex | 1.96E-03 |
| 19 | GO:0009295: nucleoid | 2.16E-03 |
| 20 | GO:0000347: THO complex | 2.77E-03 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.15E-03 |
| 22 | GO:0005763: mitochondrial small ribosomal subunit | 4.15E-03 |
| 23 | GO:0042644: chloroplast nucleoid | 4.15E-03 |
| 24 | GO:0016604: nuclear body | 4.65E-03 |
| 25 | GO:0031966: mitochondrial membrane | 6.43E-03 |
| 26 | GO:0031969: chloroplast membrane | 6.63E-03 |
| 27 | GO:0009508: plastid chromosome | 6.86E-03 |
| 28 | GO:0016607: nuclear speck | 8.42E-03 |
| 29 | GO:0042651: thylakoid membrane | 1.00E-02 |
| 30 | GO:0005623: cell | 1.27E-02 |
| 31 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.29E-02 |
| 32 | GO:0009523: photosystem II | 1.68E-02 |
| 33 | GO:0071944: cell periphery | 1.94E-02 |
| 34 | GO:0005778: peroxisomal membrane | 2.11E-02 |
| 35 | GO:0005737: cytoplasm | 2.15E-02 |
| 36 | GO:0005643: nuclear pore | 2.77E-02 |
| 37 | GO:0009707: chloroplast outer membrane | 2.77E-02 |
| 38 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.90E-02 |
| 39 | GO:0031902: late endosome membrane | 3.71E-02 |
| 40 | GO:0005774: vacuolar membrane | 3.74E-02 |
| 41 | GO:0005856: cytoskeleton | 4.27E-02 |
| 42 | GO:0005622: intracellular | 4.58E-02 |
| 43 | GO:0005829: cytosol | 4.64E-02 |