co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015833: peptide transport	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:0061014: positive regulation of mRNA catabolic process	4.60E-05
5	GO:0010265: SCF complex assembly	4.60E-05
6	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	4.60E-05
7	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	4.60E-05
8	GO:0006101: citrate metabolic process	1.13E-04
9	GO:0042939: tripeptide transport	1.13E-04
10	GO:1990069: stomatal opening	1.13E-04
11	GO:0001736: establishment of planar polarity	1.13E-04
12	GO:0031348: negative regulation of defense response	1.50E-04
13	GO:0001944: vasculature development	1.65E-04
14	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.95E-04
15	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.95E-04
16	GO:0015991: ATP hydrolysis coupled proton transport	2.14E-04
17	GO:0010587: miRNA catabolic process	2.85E-04
18	GO:0001676: long-chain fatty acid metabolic process	2.85E-04
19	GO:0051259: protein oligomerization	2.85E-04
20	GO:0010286: heat acclimation	3.70E-04
21	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	3.84E-04
22	GO:0042938: dipeptide transport	3.84E-04
23	GO:2000762: regulation of phenylpropanoid metabolic process	4.88E-04
24	GO:0006564: L-serine biosynthetic process	4.88E-04
25	GO:0006097: glyoxylate cycle	4.88E-04
26	GO:0006499: N-terminal protein myristoylation	5.92E-04
27	GO:0042176: regulation of protein catabolic process	5.98E-04
28	GO:0006751: glutathione catabolic process	5.98E-04
29	GO:0010119: regulation of stomatal movement	6.19E-04
30	GO:0045087: innate immune response	6.76E-04
31	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	7.13E-04
32	GO:0006631: fatty acid metabolic process	7.97E-04
33	GO:0070370: cellular heat acclimation	8.33E-04
34	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	8.33E-04
35	GO:0009610: response to symbiotic fungus	8.33E-04
36	GO:0009926: auxin polar transport	8.61E-04
37	GO:0006402: mRNA catabolic process	9.57E-04
38	GO:0040029: regulation of gene expression, epigenetic	9.57E-04
39	GO:0006102: isocitrate metabolic process	9.57E-04
40	GO:0006526: arginine biosynthetic process	1.09E-03
41	GO:0080144: amino acid homeostasis	1.22E-03
42	GO:0006754: ATP biosynthetic process	1.22E-03
43	GO:0009060: aerobic respiration	1.22E-03
44	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.36E-03
45	GO:0009641: shade avoidance	1.51E-03
46	GO:0009698: phenylpropanoid metabolic process	1.66E-03
47	GO:0052544: defense response by callose deposition in cell wall	1.66E-03
48	GO:0016485: protein processing	1.66E-03
49	GO:0048765: root hair cell differentiation	1.66E-03
50	GO:0009725: response to hormone	1.98E-03
51	GO:0002237: response to molecule of bacterial origin	2.14E-03
52	GO:0009901: anther dehiscence	2.31E-03
53	GO:0090351: seedling development	2.31E-03
54	GO:0009695: jasmonic acid biosynthetic process	2.85E-03
55	GO:0031408: oxylipin biosynthetic process	3.04E-03
56	GO:0003333: amino acid transmembrane transport	3.04E-03
57	GO:0015992: proton transport	3.04E-03
58	GO:0009625: response to insect	3.43E-03
59	GO:0048443: stamen development	3.63E-03
60	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.83E-03
61	GO:0010051: xylem and phloem pattern formation	4.04E-03
62	GO:0010118: stomatal movement	4.04E-03
63	GO:0010197: polar nucleus fusion	4.25E-03
64	GO:0010182: sugar mediated signaling pathway	4.25E-03
65	GO:0009723: response to ethylene	4.86E-03
66	GO:0010193: response to ozone	4.91E-03
67	GO:0009630: gravitropism	5.13E-03
68	GO:0042742: defense response to bacterium	5.32E-03
69	GO:0006508: proteolysis	5.32E-03
70	GO:0030163: protein catabolic process	5.37E-03
71	GO:0071281: cellular response to iron ion	5.37E-03
72	GO:0006914: autophagy	5.60E-03
73	GO:0009751: response to salicylic acid	7.57E-03
74	GO:0008219: cell death	7.60E-03
75	GO:0010311: lateral root formation	7.87E-03
76	GO:0010218: response to far red light	8.14E-03
77	GO:0009753: response to jasmonic acid	8.24E-03
78	GO:0009867: jasmonic acid mediated signaling pathway	8.96E-03
79	GO:0006099: tricarboxylic acid cycle	9.25E-03
80	GO:0009873: ethylene-activated signaling pathway	9.92E-03
81	GO:0051707: response to other organism	1.07E-02
82	GO:0009736: cytokinin-activated signaling pathway	1.32E-02
83	GO:0009737: response to abscisic acid	1.39E-02
84	GO:0009909: regulation of flower development	1.42E-02
85	GO:0051301: cell division	1.49E-02
86	GO:0009626: plant-type hypersensitive response	1.56E-02
87	GO:0051726: regulation of cell cycle	1.77E-02
88	GO:0006511: ubiquitin-dependent protein catabolic process	1.86E-02
89	GO:0016567: protein ubiquitination	2.18E-02
90	GO:0010150: leaf senescence	2.50E-02
91	GO:0010228: vegetative to reproductive phase transition of meristem	2.59E-02
92	GO:0009414: response to water deprivation	2.71E-02
93	GO:0006979: response to oxidative stress	2.80E-02
94	GO:0009826: unidimensional cell growth	3.32E-02
95	GO:0015031: protein transport	3.52E-02
96	GO:0006970: response to osmotic stress	3.60E-02
97	GO:0080167: response to karrikin	3.98E-02
98	GO:0006810: transport	4.06E-02
99	GO:0016192: vesicle-mediated transport	4.13E-02
100	GO:0046686: response to cadmium ion	4.31E-02
101	GO:0045454: cell redox homeostasis	4.52E-02
102	GO:0006952: defense response	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0015197: peptide transporter activity	0.00E+00
2	GO:0015334: high-affinity oligopeptide transporter activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
5	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
6	GO:0031593: polyubiquitin binding	6.25E-06
7	GO:0010013: N-1-naphthylphthalamic acid binding	4.60E-05
8	GO:0030544: Hsp70 protein binding	4.60E-05
9	GO:0070006: metalloaminopeptidase activity	4.60E-05
10	GO:0004321: fatty-acyl-CoA synthase activity	4.60E-05
11	GO:0043130: ubiquitin binding	1.10E-04
12	GO:0003994: aconitate hydratase activity	1.13E-04
13	GO:0004534: 5'-3' exoribonuclease activity	1.13E-04
14	GO:0042937: tripeptide transporter activity	1.13E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	1.13E-04
16	GO:0019003: GDP binding	1.95E-04
17	GO:0008409: 5'-3' exonuclease activity	3.84E-04
18	GO:0042936: dipeptide transporter activity	3.84E-04
19	GO:0042277: peptide binding	3.84E-04
20	GO:0004040: amidase activity	4.88E-04
21	GO:0102391: decanoate--CoA ligase activity	7.13E-04
22	GO:0004467: long-chain fatty acid-CoA ligase activity	8.33E-04
23	GO:0016207: 4-coumarate-CoA ligase activity	1.22E-03
24	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.22E-03
25	GO:0030234: enzyme regulator activity	1.51E-03
26	GO:0004177: aminopeptidase activity	1.66E-03
27	GO:0005515: protein binding	1.97E-03
28	GO:0000166: nucleotide binding	2.18E-03
29	GO:0004190: aspartic-type endopeptidase activity	2.31E-03
30	GO:0001085: RNA polymerase II transcription factor binding	4.25E-03
31	GO:0043531: ADP binding	4.61E-03
32	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.37E-03
33	GO:0008237: metallopeptidase activity	5.84E-03
34	GO:0008270: zinc ion binding	5.89E-03
35	GO:0005215: transporter activity	6.05E-03
36	GO:0016597: amino acid binding	6.08E-03
37	GO:0004222: metalloendopeptidase activity	8.14E-03
38	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	8.41E-03
39	GO:0003993: acid phosphatase activity	9.25E-03
40	GO:0051539: 4 iron, 4 sulfur cluster binding	9.82E-03
41	GO:0051287: NAD binding	1.23E-02
42	GO:0015171: amino acid transmembrane transporter activity	1.42E-02
43	GO:0016874: ligase activity	1.63E-02
44	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.18E-02
45	GO:0005524: ATP binding	3.11E-02
46	GO:0046982: protein heterodimerization activity	3.37E-02
47	GO:0000287: magnesium ion binding	3.37E-02
48	GO:0003682: chromatin binding	3.55E-02
49	GO:0003729: mRNA binding	4.12E-02
50	GO:0042803: protein homodimerization activity	4.68E-02
51	GO:0004722: protein serine/threonine phosphatase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.62E-05
2	GO:0005774: vacuolar membrane	5.76E-05
3	GO:0046861: glyoxysomal membrane	1.95E-04
4	GO:0005844: polysome	3.84E-04
5	GO:0005776: autophagosome	3.84E-04
6	GO:0000325: plant-type vacuole	6.19E-04
7	GO:0009514: glyoxysome	1.09E-03
8	GO:0031090: organelle membrane	1.22E-03
9	GO:0010494: cytoplasmic stress granule	1.22E-03
10	GO:0008540: proteasome regulatory particle, base subcomplex	1.36E-03
11	GO:0005750: mitochondrial respiratory chain complex III	2.14E-03
12	GO:0005777: peroxisome	2.60E-03
13	GO:0005758: mitochondrial intermembrane space	2.67E-03
14	GO:0009705: plant-type vacuole membrane	2.74E-03
15	GO:0005741: mitochondrial outer membrane	3.04E-03
16	GO:0005773: vacuole	3.18E-03
17	GO:0031410: cytoplasmic vesicle	3.23E-03
18	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.61E-03
19	GO:0009506: plasmodesma	4.83E-03
20	GO:0005634: nucleus	5.53E-03
21	GO:0000932: P-body	6.32E-03
22	GO:0005667: transcription factor complex	6.82E-03
23	GO:0019005: SCF ubiquitin ligase complex	7.60E-03
24	GO:0015934: large ribosomal subunit	8.41E-03
25	GO:0000502: proteasome complex	1.32E-02
26	GO:0005886: plasma membrane	1.51E-02
27	GO:0005783: endoplasmic reticulum	1.84E-02
28	GO:0005759: mitochondrial matrix	2.34E-02
29	GO:0005618: cell wall	3.04E-02
30	GO:0005743: mitochondrial inner membrane	4.98E-02