co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0009944: polarity specification of adaxial/abaxial axis	3.31E-05
11	GO:0010158: abaxial cell fate specification	3.73E-05
12	GO:1902183: regulation of shoot apical meristem development	3.73E-05
13	GO:0010450: inflorescence meristem growth	1.73E-04
14	GO:0010493: Lewis a epitope biosynthetic process	1.73E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.73E-04
16	GO:0043953: protein transport by the Tat complex	1.73E-04
17	GO:0000476: maturation of 4.5S rRNA	1.73E-04
18	GO:0000967: rRNA 5'-end processing	1.73E-04
19	GO:0015671: oxygen transport	1.73E-04
20	GO:0010480: microsporocyte differentiation	1.73E-04
21	GO:0065002: intracellular protein transmembrane transport	1.73E-04
22	GO:0046167: glycerol-3-phosphate biosynthetic process	1.73E-04
23	GO:0043007: maintenance of rDNA	1.73E-04
24	GO:0048507: meristem development	2.02E-04
25	GO:2000024: regulation of leaf development	2.02E-04
26	GO:0015995: chlorophyll biosynthetic process	2.81E-04
27	GO:0006521: regulation of cellular amino acid metabolic process	3.92E-04
28	GO:0080181: lateral root branching	3.92E-04
29	GO:0034470: ncRNA processing	3.92E-04
30	GO:0006650: glycerophospholipid metabolic process	3.92E-04
31	GO:0018026: peptidyl-lysine monomethylation	3.92E-04
32	GO:0048281: inflorescence morphogenesis	6.40E-04
33	GO:0046168: glycerol-3-phosphate catabolic process	6.40E-04
34	GO:0009405: pathogenesis	6.40E-04
35	GO:0006954: inflammatory response	6.40E-04
36	GO:0005977: glycogen metabolic process	6.40E-04
37	GO:0045165: cell fate commitment	6.40E-04
38	GO:0061077: chaperone-mediated protein folding	8.10E-04
39	GO:0007231: osmosensory signaling pathway	9.13E-04
40	GO:0006072: glycerol-3-phosphate metabolic process	9.13E-04
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.13E-04
42	GO:0010148: transpiration	9.13E-04
43	GO:0010306: rhamnogalacturonan II biosynthetic process	9.13E-04
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.13E-04
45	GO:0019464: glycine decarboxylation via glycine cleavage system	1.21E-03
46	GO:0006109: regulation of carbohydrate metabolic process	1.21E-03
47	GO:0022622: root system development	1.21E-03
48	GO:0006552: leucine catabolic process	1.21E-03
49	GO:0033500: carbohydrate homeostasis	1.21E-03
50	GO:0006546: glycine catabolic process	1.21E-03
51	GO:0010021: amylopectin biosynthetic process	1.21E-03
52	GO:0010154: fruit development	1.30E-03
53	GO:0015979: photosynthesis	1.44E-03
54	GO:0000304: response to singlet oxygen	1.54E-03
55	GO:0032502: developmental process	1.70E-03
56	GO:0042549: photosystem II stabilization	1.89E-03
57	GO:0042793: transcription from plastid promoter	1.89E-03
58	GO:0010190: cytochrome b6f complex assembly	1.89E-03
59	GO:0003006: developmental process involved in reproduction	1.89E-03
60	GO:0010027: thylakoid membrane organization	2.30E-03
61	GO:0048437: floral organ development	2.67E-03
62	GO:0070370: cellular heat acclimation	2.67E-03
63	GO:0022904: respiratory electron transport chain	2.67E-03
64	GO:0010103: stomatal complex morphogenesis	2.67E-03
65	GO:0032880: regulation of protein localization	2.67E-03
66	GO:0045490: pectin catabolic process	2.71E-03
67	GO:0010492: maintenance of shoot apical meristem identity	3.09E-03
68	GO:0000105: histidine biosynthetic process	3.09E-03
69	GO:0001558: regulation of cell growth	3.54E-03
70	GO:0032544: plastid translation	3.54E-03
71	GO:0010093: specification of floral organ identity	3.54E-03
72	GO:0019432: triglyceride biosynthetic process	4.00E-03
73	GO:0009735: response to cytokinin	4.44E-03
74	GO:0006631: fatty acid metabolic process	4.49E-03
75	GO:0009684: indoleacetic acid biosynthetic process	5.52E-03
76	GO:0010015: root morphogenesis	5.52E-03
77	GO:0006816: calcium ion transport	5.52E-03
78	GO:0009773: photosynthetic electron transport in photosystem I	5.52E-03
79	GO:0019684: photosynthesis, light reaction	5.52E-03
80	GO:0009089: lysine biosynthetic process via diaminopimelate	5.52E-03
81	GO:0043085: positive regulation of catalytic activity	5.52E-03
82	GO:1903507: negative regulation of nucleic acid-templated transcription	5.52E-03
83	GO:0048229: gametophyte development	5.52E-03
84	GO:0005983: starch catabolic process	6.06E-03
85	GO:0010582: floral meristem determinacy	6.06E-03
86	GO:0009664: plant-type cell wall organization	6.10E-03
87	GO:2000012: regulation of auxin polar transport	6.61E-03
88	GO:0010075: regulation of meristem growth	6.61E-03
89	GO:0009934: regulation of meristem structural organization	7.20E-03
90	GO:0006302: double-strand break repair	7.20E-03
91	GO:0048467: gynoecium development	7.20E-03
92	GO:0009933: meristem structural organization	7.20E-03
93	GO:0010207: photosystem II assembly	7.20E-03
94	GO:0010030: positive regulation of seed germination	7.79E-03
95	GO:0070588: calcium ion transmembrane transport	7.79E-03
96	GO:0006810: transport	7.95E-03
97	GO:0000162: tryptophan biosynthetic process	8.41E-03
98	GO:0005975: carbohydrate metabolic process	8.42E-03
99	GO:0051302: regulation of cell division	9.69E-03
100	GO:0006281: DNA repair	1.02E-02
101	GO:0031408: oxylipin biosynthetic process	1.03E-02
102	GO:0051321: meiotic cell cycle	1.03E-02
103	GO:0048511: rhythmic process	1.03E-02
104	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.10E-02
105	GO:0071369: cellular response to ethylene stimulus	1.17E-02
106	GO:0001944: vasculature development	1.17E-02
107	GO:0006284: base-excision repair	1.24E-02
108	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.32E-02
109	GO:0008284: positive regulation of cell proliferation	1.32E-02
110	GO:0048653: anther development	1.39E-02
111	GO:0042631: cellular response to water deprivation	1.39E-02
112	GO:0009958: positive gravitropism	1.47E-02
113	GO:0006520: cellular amino acid metabolic process	1.47E-02
114	GO:0006662: glycerol ether metabolic process	1.47E-02
115	GO:0048868: pollen tube development	1.47E-02
116	GO:0009646: response to absence of light	1.54E-02
117	GO:0042752: regulation of circadian rhythm	1.54E-02
118	GO:0019252: starch biosynthetic process	1.62E-02
119	GO:0008654: phospholipid biosynthetic process	1.62E-02
120	GO:0010583: response to cyclopentenone	1.78E-02
121	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
122	GO:0009409: response to cold	2.33E-02
123	GO:0009627: systemic acquired resistance	2.39E-02
124	GO:0009658: chloroplast organization	2.51E-02
125	GO:0042254: ribosome biogenesis	2.56E-02
126	GO:0016311: dephosphorylation	2.58E-02
127	GO:0006412: translation	2.67E-02
128	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
129	GO:0009813: flavonoid biosynthetic process	2.77E-02
130	GO:0006499: N-terminal protein myristoylation	2.87E-02
131	GO:0010218: response to far red light	2.87E-02
132	GO:0009631: cold acclimation	2.96E-02
133	GO:0048527: lateral root development	2.96E-02
134	GO:0080167: response to karrikin	3.11E-02
135	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.22E-02
136	GO:0034599: cellular response to oxidative stress	3.27E-02
137	GO:0045454: cell redox homeostasis	3.72E-02
138	GO:0051707: response to other organism	3.79E-02
139	GO:0010114: response to red light	3.79E-02
140	GO:0009965: leaf morphogenesis	4.12E-02
141	GO:0031347: regulation of defense response	4.34E-02
142	GO:0032259: methylation	4.38E-02
143	GO:0006486: protein glycosylation	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
5	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
10	GO:0005528: FK506 binding	3.31E-05
11	GO:0080030: methyl indole-3-acetate esterase activity	5.54E-05
12	GO:0030570: pectate lyase activity	6.00E-05
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.41E-05
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.73E-04
15	GO:0046920: alpha-(1->3)-fucosyltransferase activity	1.73E-04
16	GO:0050308: sugar-phosphatase activity	1.73E-04
17	GO:0019203: carbohydrate phosphatase activity	1.73E-04
18	GO:0005344: oxygen transporter activity	1.73E-04
19	GO:0019843: rRNA binding	2.63E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.92E-04
21	GO:0019156: isoamylase activity	3.92E-04
22	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.92E-04
23	GO:0016868: intramolecular transferase activity, phosphotransferases	3.92E-04
24	GO:0004565: beta-galactosidase activity	4.32E-04
25	GO:0005504: fatty acid binding	6.40E-04
26	GO:0090729: toxin activity	6.40E-04
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.40E-04
28	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.13E-04
29	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.13E-04
30	GO:0016851: magnesium chelatase activity	9.13E-04
31	GO:0043023: ribosomal large subunit binding	9.13E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.21E-03
33	GO:0080032: methyl jasmonate esterase activity	1.21E-03
34	GO:0019199: transmembrane receptor protein kinase activity	1.21E-03
35	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.21E-03
36	GO:0045430: chalcone isomerase activity	1.21E-03
37	GO:0042277: peptide binding	1.21E-03
38	GO:0016279: protein-lysine N-methyltransferase activity	1.21E-03
39	GO:0008725: DNA-3-methyladenine glycosylase activity	1.54E-03
40	GO:0004040: amidase activity	1.54E-03
41	GO:0004556: alpha-amylase activity	1.89E-03
42	GO:2001070: starch binding	1.89E-03
43	GO:0051920: peroxiredoxin activity	2.27E-03
44	GO:0016209: antioxidant activity	3.09E-03
45	GO:0003993: acid phosphatase activity	3.95E-03
46	GO:0008417: fucosyltransferase activity	4.00E-03
47	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.00E-03
48	GO:0016788: hydrolase activity, acting on ester bonds	4.83E-03
49	GO:0008047: enzyme activator activity	4.99E-03
50	GO:0005262: calcium channel activity	6.61E-03
51	GO:0008083: growth factor activity	7.20E-03
52	GO:0004190: aspartic-type endopeptidase activity	7.79E-03
53	GO:0003887: DNA-directed DNA polymerase activity	8.41E-03
54	GO:0004722: protein serine/threonine phosphatase activity	8.77E-03
55	GO:0004857: enzyme inhibitor activity	9.03E-03
56	GO:0003714: transcription corepressor activity	9.03E-03
57	GO:0033612: receptor serine/threonine kinase binding	1.03E-02
58	GO:0008408: 3'-5' exonuclease activity	1.03E-02
59	GO:0003727: single-stranded RNA binding	1.24E-02
60	GO:0016829: lyase activity	1.27E-02
61	GO:0047134: protein-disulfide reductase activity	1.32E-02
62	GO:0003735: structural constituent of ribosome	1.34E-02
63	GO:0008536: Ran GTPase binding	1.47E-02
64	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
65	GO:0048038: quinone binding	1.70E-02
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
67	GO:0003684: damaged DNA binding	1.95E-02
68	GO:0046872: metal ion binding	1.98E-02
69	GO:0016597: amino acid binding	2.12E-02
70	GO:0008168: methyltransferase activity	2.41E-02
71	GO:0005096: GTPase activator activity	2.77E-02
72	GO:0030145: manganese ion binding	2.96E-02
73	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
74	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
75	GO:0043621: protein self-association	4.01E-02
76	GO:0051287: NAD binding	4.34E-02
77	GO:0009055: electron carrier activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0010368: chloroplast isoamylase complex	0.00E+00
4	GO:0009507: chloroplast	5.00E-15
5	GO:0009543: chloroplast thylakoid lumen	1.45E-06
6	GO:0009570: chloroplast stroma	3.77E-06
7	GO:0009535: chloroplast thylakoid membrane	3.91E-06
8	GO:0009534: chloroplast thylakoid	9.09E-06
9	GO:0009579: thylakoid	6.77E-05
10	GO:0009941: chloroplast envelope	8.78E-05
11	GO:0031361: integral component of thylakoid membrane	1.73E-04
12	GO:0000791: euchromatin	1.73E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.02E-04
14	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.92E-04
15	GO:0030870: Mre11 complex	3.92E-04
16	GO:0010007: magnesium chelatase complex	6.40E-04
17	GO:0033281: TAT protein transport complex	6.40E-04
18	GO:0009531: secondary cell wall	9.13E-04
19	GO:0005960: glycine cleavage complex	9.13E-04
20	GO:0009331: glycerol-3-phosphate dehydrogenase complex	9.13E-04
21	GO:0030660: Golgi-associated vesicle membrane	1.21E-03
22	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.21E-03
23	GO:0000795: synaptonemal complex	1.54E-03
24	GO:0010319: stromule	2.05E-03
25	GO:0009538: photosystem I reaction center	3.09E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.09E-03
27	GO:0031305: integral component of mitochondrial inner membrane	3.09E-03
28	GO:0005840: ribosome	4.41E-03
29	GO:0031977: thylakoid lumen	4.49E-03
30	GO:0048046: apoplast	4.66E-03
31	GO:0055028: cortical microtubule	4.99E-03
32	GO:0005740: mitochondrial envelope	4.99E-03
33	GO:0005765: lysosomal membrane	5.52E-03
34	GO:0009508: plastid chromosome	6.61E-03
35	GO:0030095: chloroplast photosystem II	7.20E-03
36	GO:0043234: protein complex	8.41E-03
37	GO:0009654: photosystem II oxygen evolving complex	9.69E-03
38	GO:0019898: extrinsic component of membrane	1.62E-02
39	GO:0000785: chromatin	1.78E-02
40	GO:0032580: Golgi cisterna membrane	1.95E-02
41	GO:0009295: nucleoid	2.04E-02
42	GO:0009505: plant-type cell wall	2.07E-02
43	GO:0015934: large ribosomal subunit	2.96E-02
44	GO:0031969: chloroplast membrane	3.11E-02