GO Enrichment Analysis of Co-expressed Genes with
AT3G49140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 4 | GO:0016120: carotene biosynthetic process | 6.50E-06 |
| 5 | GO:0016123: xanthophyll biosynthetic process | 6.50E-06 |
| 6 | GO:0048564: photosystem I assembly | 2.62E-05 |
| 7 | GO:0009657: plastid organization | 3.35E-05 |
| 8 | GO:0019646: aerobic electron transport chain | 6.10E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.10E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 6.10E-05 |
| 11 | GO:0006436: tryptophanyl-tRNA aminoacylation | 6.10E-05 |
| 12 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.48E-04 |
| 13 | GO:0034755: iron ion transmembrane transport | 1.48E-04 |
| 14 | GO:0006435: threonyl-tRNA aminoacylation | 1.48E-04 |
| 15 | GO:0080005: photosystem stoichiometry adjustment | 1.48E-04 |
| 16 | GO:0006013: mannose metabolic process | 2.51E-04 |
| 17 | GO:0002230: positive regulation of defense response to virus by host | 2.51E-04 |
| 18 | GO:1901672: positive regulation of systemic acquired resistance | 2.51E-04 |
| 19 | GO:0090307: mitotic spindle assembly | 3.65E-04 |
| 20 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 3.65E-04 |
| 21 | GO:0031935: regulation of chromatin silencing | 4.88E-04 |
| 22 | GO:0009765: photosynthesis, light harvesting | 4.88E-04 |
| 23 | GO:0031122: cytoplasmic microtubule organization | 4.88E-04 |
| 24 | GO:0034052: positive regulation of plant-type hypersensitive response | 6.19E-04 |
| 25 | GO:0006282: regulation of DNA repair | 6.19E-04 |
| 26 | GO:0009816: defense response to bacterium, incompatible interaction | 6.25E-04 |
| 27 | GO:0042372: phylloquinone biosynthetic process | 9.01E-04 |
| 28 | GO:0010189: vitamin E biosynthetic process | 9.01E-04 |
| 29 | GO:1900056: negative regulation of leaf senescence | 1.05E-03 |
| 30 | GO:0006401: RNA catabolic process | 1.05E-03 |
| 31 | GO:0006402: mRNA catabolic process | 1.21E-03 |
| 32 | GO:0071482: cellular response to light stimulus | 1.38E-03 |
| 33 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.55E-03 |
| 34 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.73E-03 |
| 35 | GO:0031425: chloroplast RNA processing | 1.73E-03 |
| 36 | GO:1900426: positive regulation of defense response to bacterium | 1.73E-03 |
| 37 | GO:0045036: protein targeting to chloroplast | 1.92E-03 |
| 38 | GO:0006415: translational termination | 2.12E-03 |
| 39 | GO:0006879: cellular iron ion homeostasis | 2.12E-03 |
| 40 | GO:0006396: RNA processing | 2.36E-03 |
| 41 | GO:0009767: photosynthetic electron transport chain | 2.52E-03 |
| 42 | GO:0006418: tRNA aminoacylation for protein translation | 3.65E-03 |
| 43 | GO:0007017: microtubule-based process | 3.65E-03 |
| 44 | GO:0009451: RNA modification | 4.02E-03 |
| 45 | GO:0016226: iron-sulfur cluster assembly | 4.15E-03 |
| 46 | GO:0080092: regulation of pollen tube growth | 4.15E-03 |
| 47 | GO:0016117: carotenoid biosynthetic process | 4.92E-03 |
| 48 | GO:0008033: tRNA processing | 5.19E-03 |
| 49 | GO:0009791: post-embryonic development | 6.03E-03 |
| 50 | GO:0008654: phospholipid biosynthetic process | 6.03E-03 |
| 51 | GO:0009658: chloroplast organization | 6.06E-03 |
| 52 | GO:0009793: embryo development ending in seed dormancy | 6.09E-03 |
| 53 | GO:0010193: response to ozone | 6.32E-03 |
| 54 | GO:0031047: gene silencing by RNA | 6.61E-03 |
| 55 | GO:0051607: defense response to virus | 7.84E-03 |
| 56 | GO:0015995: chlorophyll biosynthetic process | 9.14E-03 |
| 57 | GO:0048481: plant ovule development | 9.82E-03 |
| 58 | GO:0018298: protein-chromophore linkage | 9.82E-03 |
| 59 | GO:0032259: methylation | 1.06E-02 |
| 60 | GO:0007568: aging | 1.09E-02 |
| 61 | GO:0009910: negative regulation of flower development | 1.09E-02 |
| 62 | GO:0006397: mRNA processing | 1.16E-02 |
| 63 | GO:0010114: response to red light | 1.39E-02 |
| 64 | GO:0046686: response to cadmium ion | 1.50E-02 |
| 65 | GO:0006364: rRNA processing | 1.71E-02 |
| 66 | GO:0010224: response to UV-B | 1.76E-02 |
| 67 | GO:0006417: regulation of translation | 1.84E-02 |
| 68 | GO:0009626: plant-type hypersensitive response | 2.02E-02 |
| 69 | GO:0016569: covalent chromatin modification | 2.11E-02 |
| 70 | GO:0055085: transmembrane transport | 2.51E-02 |
| 71 | GO:0006457: protein folding | 2.56E-02 |
| 72 | GO:0016036: cellular response to phosphate starvation | 3.09E-02 |
| 73 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.36E-02 |
| 74 | GO:0010468: regulation of gene expression | 3.68E-02 |
| 75 | GO:0009860: pollen tube growth | 4.67E-02 |
| 76 | GO:0055114: oxidation-reduction process | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 3 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 6.10E-05 |
| 4 | GO:0004830: tryptophan-tRNA ligase activity | 6.10E-05 |
| 5 | GO:0030941: chloroplast targeting sequence binding | 6.10E-05 |
| 6 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 6.10E-05 |
| 7 | GO:0004829: threonine-tRNA ligase activity | 1.48E-04 |
| 8 | GO:0032947: protein complex scaffold | 2.51E-04 |
| 9 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.51E-04 |
| 10 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 2.51E-04 |
| 11 | GO:0016149: translation release factor activity, codon specific | 3.65E-04 |
| 12 | GO:0043015: gamma-tubulin binding | 4.88E-04 |
| 13 | GO:0043495: protein anchor | 4.88E-04 |
| 14 | GO:0051861: glycolipid binding | 4.88E-04 |
| 15 | GO:0016491: oxidoreductase activity | 5.37E-04 |
| 16 | GO:0051011: microtubule minus-end binding | 6.19E-04 |
| 17 | GO:0004605: phosphatidate cytidylyltransferase activity | 7.57E-04 |
| 18 | GO:0015631: tubulin binding | 9.01E-04 |
| 19 | GO:0004559: alpha-mannosidase activity | 9.01E-04 |
| 20 | GO:0019899: enzyme binding | 1.05E-03 |
| 21 | GO:0003747: translation release factor activity | 1.55E-03 |
| 22 | GO:0005381: iron ion transmembrane transporter activity | 1.73E-03 |
| 23 | GO:0004519: endonuclease activity | 1.88E-03 |
| 24 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.12E-03 |
| 25 | GO:0000175: 3'-5'-exoribonuclease activity | 2.52E-03 |
| 26 | GO:0005528: FK506 binding | 3.42E-03 |
| 27 | GO:0051536: iron-sulfur cluster binding | 3.42E-03 |
| 28 | GO:0003954: NADH dehydrogenase activity | 3.42E-03 |
| 29 | GO:0004176: ATP-dependent peptidase activity | 3.89E-03 |
| 30 | GO:0022891: substrate-specific transmembrane transporter activity | 4.40E-03 |
| 31 | GO:0003727: single-stranded RNA binding | 4.65E-03 |
| 32 | GO:0004812: aminoacyl-tRNA ligase activity | 4.92E-03 |
| 33 | GO:0008080: N-acetyltransferase activity | 5.46E-03 |
| 34 | GO:0008168: methyltransferase activity | 5.84E-03 |
| 35 | GO:0048038: quinone binding | 6.32E-03 |
| 36 | GO:0004518: nuclease activity | 6.61E-03 |
| 37 | GO:0008483: transaminase activity | 7.52E-03 |
| 38 | GO:0005200: structural constituent of cytoskeleton | 7.52E-03 |
| 39 | GO:0016168: chlorophyll binding | 8.48E-03 |
| 40 | GO:0050897: cobalt ion binding | 1.09E-02 |
| 41 | GO:0003723: RNA binding | 1.20E-02 |
| 42 | GO:0043621: protein self-association | 1.47E-02 |
| 43 | GO:0005198: structural molecule activity | 1.51E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.55E-02 |
| 45 | GO:0003777: microtubule motor activity | 1.84E-02 |
| 46 | GO:0031625: ubiquitin protein ligase binding | 1.84E-02 |
| 47 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.63E-02 |
| 48 | GO:0005507: copper ion binding | 2.82E-02 |
| 49 | GO:0042802: identical protein binding | 3.85E-02 |
| 50 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.85E-02 |
| 51 | GO:0016788: hydrolase activity, acting on ester bonds | 4.49E-02 |
| 52 | GO:0050660: flavin adenine dinucleotide binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.09E-16 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.94E-05 |
| 3 | GO:0031969: chloroplast membrane | 1.24E-04 |
| 4 | GO:0031304: intrinsic component of mitochondrial inner membrane | 1.48E-04 |
| 5 | GO:0008274: gamma-tubulin ring complex | 1.48E-04 |
| 6 | GO:0009570: chloroplast stroma | 1.78E-04 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.05E-04 |
| 8 | GO:0000923: equatorial microtubule organizing center | 3.65E-04 |
| 9 | GO:0030286: dynein complex | 4.88E-04 |
| 10 | GO:0031359: integral component of chloroplast outer membrane | 1.05E-03 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.55E-03 |
| 12 | GO:0000922: spindle pole | 1.55E-03 |
| 13 | GO:0016324: apical plasma membrane | 1.92E-03 |
| 14 | GO:0030095: chloroplast photosystem II | 2.74E-03 |
| 15 | GO:0005875: microtubule associated complex | 3.18E-03 |
| 16 | GO:0042651: thylakoid membrane | 3.65E-03 |
| 17 | GO:0009534: chloroplast thylakoid | 4.42E-03 |
| 18 | GO:0009941: chloroplast envelope | 4.96E-03 |
| 19 | GO:0009523: photosystem II | 6.03E-03 |
| 20 | GO:0009707: chloroplast outer membrane | 9.82E-03 |
| 21 | GO:0043231: intracellular membrane-bounded organelle | 1.23E-02 |
| 22 | GO:0031977: thylakoid lumen | 1.31E-02 |
| 23 | GO:0005747: mitochondrial respiratory chain complex I | 1.97E-02 |
| 24 | GO:0010287: plastoglobule | 2.49E-02 |
| 25 | GO:0005759: mitochondrial matrix | 3.04E-02 |
| 26 | GO:0005768: endosome | 3.60E-02 |
| 27 | GO:0009505: plant-type cell wall | 4.99E-02 |