Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000740: nuclear membrane fusion0.00E+00
2GO:0044843: cell cycle G1/S phase transition0.00E+00
3GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
4GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
5GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
6GO:0034050: host programmed cell death induced by symbiont0.00E+00
7GO:0046487: glyoxylate metabolic process0.00E+00
8GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
9GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
10GO:1990258: histone glutamine methylation0.00E+00
11GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
12GO:0090239: regulation of histone H4 acetylation0.00E+00
13GO:0006412: translation7.79E-146
14GO:0042254: ribosome biogenesis1.27E-55
15GO:0000027: ribosomal large subunit assembly6.66E-14
16GO:0000028: ribosomal small subunit assembly5.94E-07
17GO:0009735: response to cytokinin7.90E-07
18GO:0006626: protein targeting to mitochondrion8.98E-06
19GO:0048569: post-embryonic animal organ development1.25E-05
20GO:0009967: positive regulation of signal transduction1.25E-05
21GO:0009955: adaxial/abaxial pattern specification1.42E-05
22GO:0006364: rRNA processing3.11E-05
23GO:0006413: translational initiation3.75E-05
24GO:1902626: assembly of large subunit precursor of preribosome4.21E-05
25GO:0002181: cytoplasmic translation4.21E-05
26GO:0042274: ribosomal small subunit biogenesis1.54E-04
27GO:0006820: anion transport1.60E-04
28GO:0031167: rRNA methylation2.36E-04
29GO:0006458: 'de novo' protein folding4.43E-04
30GO:0035266: meristem growth5.34E-04
31GO:0030490: maturation of SSU-rRNA5.34E-04
32GO:0006434: seryl-tRNA aminoacylation5.34E-04
33GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.34E-04
34GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.34E-04
35GO:0032365: intracellular lipid transport5.34E-04
36GO:0006407: rRNA export from nucleus5.34E-04
37GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process5.34E-04
38GO:0019877: diaminopimelate biosynthetic process5.34E-04
39GO:0031120: snRNA pseudouridine synthesis5.34E-04
40GO:0031118: rRNA pseudouridine synthesis5.34E-04
41GO:0008033: tRNA processing8.04E-04
42GO:0001510: RNA methylation8.61E-04
43GO:0010197: polar nucleus fusion8.84E-04
44GO:0098656: anion transmembrane transport1.03E-03
45GO:2000072: regulation of defense response to fungus, incompatible interaction1.15E-03
46GO:0045901: positive regulation of translational elongation1.15E-03
47GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.15E-03
48GO:0045041: protein import into mitochondrial intermembrane space1.15E-03
49GO:0043981: histone H4-K5 acetylation1.15E-03
50GO:0006452: translational frameshifting1.15E-03
51GO:0010198: synergid death1.15E-03
52GO:0015786: UDP-glucose transport1.15E-03
53GO:0051788: response to misfolded protein1.15E-03
54GO:0045859: regulation of protein kinase activity1.15E-03
55GO:0006435: threonyl-tRNA aminoacylation1.15E-03
56GO:0045905: positive regulation of translational termination1.15E-03
57GO:0000387: spliceosomal snRNP assembly1.21E-03
58GO:0046686: response to cadmium ion1.66E-03
59GO:0015783: GDP-fucose transport1.89E-03
60GO:0010476: gibberellin mediated signaling pathway1.89E-03
61GO:0042256: mature ribosome assembly1.89E-03
62GO:0045039: protein import into mitochondrial inner membrane1.89E-03
63GO:0046168: glycerol-3-phosphate catabolic process1.89E-03
64GO:0009150: purine ribonucleotide metabolic process1.89E-03
65GO:0006446: regulation of translational initiation2.41E-03
66GO:0070301: cellular response to hydrogen peroxide2.73E-03
67GO:0051085: chaperone mediated protein folding requiring cofactor2.73E-03
68GO:0006241: CTP biosynthetic process2.73E-03
69GO:0072334: UDP-galactose transmembrane transport2.73E-03
70GO:0006072: glycerol-3-phosphate metabolic process2.73E-03
71GO:0009647: skotomorphogenesis2.73E-03
72GO:0006165: nucleoside diphosphate phosphorylation2.73E-03
73GO:0006228: UTP biosynthetic process2.73E-03
74GO:0006164: purine nucleotide biosynthetic process2.73E-03
75GO:0009558: embryo sac cellularization2.73E-03
76GO:0046513: ceramide biosynthetic process2.73E-03
77GO:0006515: misfolded or incompletely synthesized protein catabolic process2.73E-03
78GO:0007004: telomere maintenance via telomerase2.73E-03
79GO:0000398: mRNA splicing, via spliceosome2.95E-03
80GO:0006487: protein N-linked glycosylation3.34E-03
81GO:0030150: protein import into mitochondrial matrix3.34E-03
82GO:0010483: pollen tube reception3.68E-03
83GO:0006183: GTP biosynthetic process3.68E-03
84GO:0006621: protein retention in ER lumen3.68E-03
85GO:0051205: protein insertion into membrane3.68E-03
86GO:0061077: chaperone-mediated protein folding4.06E-03
87GO:0007005: mitochondrion organization4.45E-03
88GO:0006461: protein complex assembly4.72E-03
89GO:1902183: regulation of shoot apical meristem development4.72E-03
90GO:0019408: dolichol biosynthetic process4.72E-03
91GO:0018279: protein N-linked glycosylation via asparagine4.72E-03
92GO:0008283: cell proliferation4.85E-03
93GO:0071215: cellular response to abscisic acid stimulus4.85E-03
94GO:0040007: growth4.85E-03
95GO:0006414: translational elongation5.53E-03
96GO:0001731: formation of translation preinitiation complex5.86E-03
97GO:0000470: maturation of LSU-rRNA5.86E-03
98GO:0043248: proteasome assembly5.86E-03
99GO:0016554: cytidine to uridine editing5.86E-03
100GO:0000741: karyogamy5.86E-03
101GO:0016444: somatic cell DNA recombination7.07E-03
102GO:0009648: photoperiodism7.07E-03
103GO:1901001: negative regulation of response to salt stress7.07E-03
104GO:0042026: protein refolding7.07E-03
105GO:0000245: spliceosomal complex assembly7.07E-03
106GO:0009749: response to glucose7.72E-03
107GO:0006635: fatty acid beta-oxidation8.27E-03
108GO:0048528: post-embryonic root development8.37E-03
109GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.37E-03
110GO:0009645: response to low light intensity stimulus8.37E-03
111GO:0001522: pseudouridine synthesis9.75E-03
112GO:0050821: protein stabilization9.75E-03
113GO:0031540: regulation of anthocyanin biosynthetic process9.75E-03
114GO:0043562: cellular response to nitrogen levels1.12E-02
115GO:0001558: regulation of cell growth1.12E-02
116GO:0010204: defense response signaling pathway, resistance gene-independent1.12E-02
117GO:0030968: endoplasmic reticulum unfolded protein response1.12E-02
118GO:0009793: embryo development ending in seed dormancy1.17E-02
119GO:0015780: nucleotide-sugar transport1.27E-02
120GO:0007338: single fertilization1.27E-02
121GO:0009245: lipid A biosynthetic process1.27E-02
122GO:0006098: pentose-phosphate shunt1.27E-02
123GO:0048507: meristem development1.27E-02
124GO:0006189: 'de novo' IMP biosynthetic process1.27E-02
125GO:0009060: aerobic respiration1.27E-02
126GO:0042761: very long-chain fatty acid biosynthetic process1.43E-02
127GO:0010449: root meristem growth1.43E-02
128GO:0006259: DNA metabolic process1.60E-02
129GO:0010162: seed dormancy process1.60E-02
130GO:0009845: seed germination1.65E-02
131GO:0010015: root morphogenesis1.77E-02
132GO:0006913: nucleocytoplasmic transport1.77E-02
133GO:0009089: lysine biosynthetic process via diaminopimelate1.77E-02
134GO:0052544: defense response by callose deposition in cell wall1.77E-02
135GO:0015031: protein transport1.77E-02
136GO:0015770: sucrose transport1.77E-02
137GO:0009908: flower development1.82E-02
138GO:0006790: sulfur compound metabolic process1.95E-02
139GO:0012501: programmed cell death1.95E-02
140GO:0006094: gluconeogenesis2.14E-02
141GO:2000012: regulation of auxin polar transport2.14E-02
142GO:0010102: lateral root morphogenesis2.14E-02
143GO:2000028: regulation of photoperiodism, flowering2.14E-02
144GO:0048467: gynoecium development2.33E-02
145GO:0002237: response to molecule of bacterial origin2.33E-02
146GO:0009644: response to high light intensity2.79E-02
147GO:0009617: response to bacterium2.80E-02
148GO:0009651: response to salt stress2.87E-02
149GO:0009965: leaf morphogenesis2.90E-02
150GO:0009944: polarity specification of adaxial/abaxial axis2.94E-02
151GO:0006289: nucleotide-excision repair2.94E-02
152GO:0010073: meristem maintenance3.16E-02
153GO:0051302: regulation of cell division3.16E-02
154GO:0051260: protein homooligomerization3.38E-02
155GO:0010431: seed maturation3.38E-02
156GO:0006334: nucleosome assembly3.38E-02
157GO:0051603: proteolysis involved in cellular protein catabolic process3.60E-02
158GO:0009294: DNA mediated transformation3.83E-02
159GO:0010584: pollen exine formation4.07E-02
160GO:0006096: glycolytic process4.10E-02
161GO:0000413: protein peptidyl-prolyl isomerization4.55E-02
162GO:0048366: leaf development4.71E-02
163GO:0009553: embryo sac development4.78E-02
164GO:0010305: leaf vascular tissue pattern formation4.80E-02
165GO:0009409: response to cold4.84E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0103099: UDP-glucose:5-methylthiopentylhydroximate S-glucosyltransferase activity0.00E+00
3GO:0103101: UDP-glucose:7-methylthioheptylhydroximate S-glucosyltransferase activity0.00E+00
4GO:0034513: box H/ACA snoRNA binding0.00E+00
5GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
6GO:0047251: thiohydroximate beta-D-glucosyltransferase activity0.00E+00
7GO:0103103: UDP-glucose: 9-methylthiononylhydroximate S-glucosyltransferase activity0.00E+00
8GO:0103102: UDP-glucose:8-methylthiooctylhydroximate S-glucosyltransferase activity0.00E+00
9GO:0103100: UDP-glucose: 6-methylthiohexylhydroximate S-glucosyltransferase activity0.00E+00
10GO:1990259: histone-glutamine methyltransferase activity0.00E+00
11GO:0102659: UDP-glucose: 4-methylthiobutylhydroximate S-glucosyltransferase activity0.00E+00
12GO:0003735: structural constituent of ribosome1.38E-176
13GO:0003729: mRNA binding6.02E-37
14GO:0019843: rRNA binding5.82E-17
15GO:0030515: snoRNA binding3.32E-07
16GO:0003746: translation elongation factor activity3.65E-07
17GO:0015288: porin activity5.94E-07
18GO:0005078: MAP-kinase scaffold activity1.25E-05
19GO:0003723: RNA binding2.04E-05
20GO:0008649: rRNA methyltransferase activity4.21E-05
21GO:0008308: voltage-gated anion channel activity4.62E-05
22GO:0003743: translation initiation factor activity7.19E-05
23GO:0008097: 5S rRNA binding8.96E-05
24GO:0044183: protein binding involved in protein folding1.31E-04
25GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.09E-04
26GO:0035614: snRNA stem-loop binding5.34E-04
27GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase5.34E-04
28GO:0000824: inositol tetrakisphosphate 3-kinase activity5.34E-04
29GO:0004828: serine-tRNA ligase activity5.34E-04
30GO:0047326: inositol tetrakisphosphate 5-kinase activity5.34E-04
31GO:0015157: oligosaccharide transmembrane transporter activity5.34E-04
32GO:0004679: AMP-activated protein kinase activity5.34E-04
33GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity5.34E-04
34GO:0005080: protein kinase C binding5.34E-04
35GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity5.34E-04
36GO:0043022: ribosome binding7.07E-04
37GO:0050291: sphingosine N-acyltransferase activity1.15E-03
38GO:0004618: phosphoglycerate kinase activity1.15E-03
39GO:0070034: telomerase RNA binding1.15E-03
40GO:0032934: sterol binding1.15E-03
41GO:0004829: threonine-tRNA ligase activity1.15E-03
42GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.15E-03
43GO:0070361: mitochondrial light strand promoter anti-sense binding1.15E-03
44GO:0035241: protein-arginine omega-N monomethyltransferase activity1.15E-03
45GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.15E-03
46GO:0030619: U1 snRNA binding1.15E-03
47GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.15E-03
48GO:0001055: RNA polymerase II activity1.21E-03
49GO:0001054: RNA polymerase I activity1.63E-03
50GO:0001056: RNA polymerase III activity1.87E-03
51GO:0005457: GDP-fucose transmembrane transporter activity1.89E-03
52GO:0008469: histone-arginine N-methyltransferase activity1.89E-03
53GO:0015462: ATPase-coupled protein transmembrane transporter activity1.89E-03
54GO:0032947: protein complex scaffold1.89E-03
55GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.89E-03
56GO:0051082: unfolded protein binding2.37E-03
57GO:0005460: UDP-glucose transmembrane transporter activity2.73E-03
58GO:0004550: nucleoside diphosphate kinase activity2.73E-03
59GO:0047627: adenylylsulfatase activity2.73E-03
60GO:0046923: ER retention sequence binding3.68E-03
61GO:0070628: proteasome binding3.68E-03
62GO:0008233: peptidase activity3.92E-03
63GO:0004298: threonine-type endopeptidase activity4.06E-03
64GO:0005459: UDP-galactose transmembrane transporter activity4.72E-03
65GO:0045547: dehydrodolichyl diphosphate synthase activity4.72E-03
66GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.72E-03
67GO:0004040: amidase activity4.72E-03
68GO:0004332: fructose-bisphosphate aldolase activity5.86E-03
69GO:0031593: polyubiquitin binding5.86E-03
70GO:0031177: phosphopantetheine binding5.86E-03
71GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity5.86E-03
72GO:0031369: translation initiation factor binding5.86E-03
73GO:0000035: acyl binding7.07E-03
74GO:0019887: protein kinase regulator activity7.07E-03
75GO:0005338: nucleotide-sugar transmembrane transporter activity8.37E-03
76GO:0008235: metalloexopeptidase activity8.37E-03
77GO:0008121: ubiquinol-cytochrome-c reductase activity8.37E-03
78GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.75E-03
79GO:0003678: DNA helicase activity1.27E-02
80GO:0008515: sucrose transmembrane transporter activity1.77E-02
81GO:0050897: cobalt ion binding1.82E-02
82GO:0031072: heat shock protein binding2.14E-02
83GO:0015266: protein channel activity2.14E-02
84GO:0000166: nucleotide binding2.16E-02
85GO:0051119: sugar transmembrane transporter activity2.53E-02
86GO:0051536: iron-sulfur cluster binding2.94E-02
87GO:0004407: histone deacetylase activity2.94E-02
88GO:0043130: ubiquitin binding2.94E-02
89GO:0051087: chaperone binding3.16E-02
90GO:0005216: ion channel activity3.16E-02
91GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.38E-02
92GO:0004176: ATP-dependent peptidase activity3.38E-02
93GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.48E-02
94GO:0008514: organic anion transmembrane transporter activity4.07E-02
RankGO TermAdjusted P value
1GO:0090661: box H/ACA telomerase RNP complex0.00E+00
2GO:0072589: box H/ACA scaRNP complex0.00E+00
3GO:0005832: chaperonin-containing T-complex0.00E+00
4GO:0043186: P granule0.00E+00
5GO:0005840: ribosome4.32E-121
6GO:0022626: cytosolic ribosome1.07E-110
7GO:0022625: cytosolic large ribosomal subunit4.00E-109
8GO:0022627: cytosolic small ribosomal subunit2.79E-71
9GO:0005829: cytosol1.26E-43
10GO:0005730: nucleolus1.42E-43
11GO:0005737: cytoplasm1.53E-34
12GO:0009506: plasmodesma3.09E-26
13GO:0015934: large ribosomal subunit4.38E-18
14GO:0005774: vacuolar membrane2.47E-16
15GO:0015935: small ribosomal subunit1.98E-13
16GO:0016020: membrane5.09E-12
17GO:0005618: cell wall2.39E-11
18GO:0005773: vacuole5.05E-10
19GO:0009507: chloroplast2.78E-07
20GO:0046930: pore complex9.93E-07
21GO:0015030: Cajal body2.38E-06
22GO:0031428: box C/D snoRNP complex8.38E-06
23GO:0005886: plasma membrane1.21E-05
24GO:0005853: eukaryotic translation elongation factor 1 complex4.21E-05
25GO:0005852: eukaryotic translation initiation factor 3 complex1.31E-04
26GO:0032040: small-subunit processome1.60E-04
27GO:0019013: viral nucleocapsid1.93E-04
28GO:0005741: mitochondrial outer membrane4.68E-04
29GO:0030686: 90S preribosome5.34E-04
30GO:0031359: integral component of chloroplast outer membrane5.68E-04
31GO:0005742: mitochondrial outer membrane translocase complex8.61E-04
32GO:0005736: DNA-directed RNA polymerase I complex1.03E-03
33GO:0005685: U1 snRNP1.03E-03
34GO:0005666: DNA-directed RNA polymerase III complex1.21E-03
35GO:0000502: proteasome complex1.38E-03
36GO:0000418: DNA-directed RNA polymerase IV complex1.41E-03
37GO:0005681: spliceosomal complex1.78E-03
38GO:0005665: DNA-directed RNA polymerase II, core complex1.87E-03
39GO:0034719: SMN-Sm protein complex1.89E-03
40GO:0005732: small nucleolar ribonucleoprotein complex2.70E-03
41GO:0031429: box H/ACA snoRNP complex2.73E-03
42GO:0009331: glycerol-3-phosphate dehydrogenase complex2.73E-03
43GO:0005758: mitochondrial intermembrane space3.34E-03
44GO:0005682: U5 snRNP3.68E-03
45GO:0005839: proteasome core complex4.06E-03
46GO:0097526: spliceosomal tri-snRNP complex4.72E-03
47GO:0008250: oligosaccharyltransferase complex4.72E-03
48GO:0005687: U4 snRNP4.72E-03
49GO:0016282: eukaryotic 43S preinitiation complex5.86E-03
50GO:0005851: eukaryotic translation initiation factor 2B complex5.86E-03
51GO:0005743: mitochondrial inner membrane7.06E-03
52GO:0033290: eukaryotic 48S preinitiation complex7.07E-03
53GO:0005689: U12-type spliceosomal complex7.07E-03
54GO:0016272: prefoldin complex7.07E-03
55GO:0071004: U2-type prespliceosome9.75E-03
56GO:0030529: intracellular ribonucleoprotein complex1.20E-02
57GO:0005763: mitochondrial small ribosomal subunit1.27E-02
58GO:0071011: precatalytic spliceosome1.43E-02
59GO:0005740: mitochondrial envelope1.60E-02
60GO:0005686: U2 snRNP1.60E-02
61GO:0009536: plastid1.64E-02
62GO:0071013: catalytic step 2 spliceosome1.77E-02
63GO:0008541: proteasome regulatory particle, lid subcomplex1.77E-02
64GO:0048471: perinuclear region of cytoplasm1.77E-02
65GO:0005759: mitochondrial matrix1.99E-02
66GO:0005622: intracellular2.18E-02
67GO:0005750: mitochondrial respiratory chain complex III2.33E-02
68GO:0000419: DNA-directed RNA polymerase V complex2.74E-02
69GO:0070469: respiratory chain3.16E-02
70GO:0005744: mitochondrial inner membrane presequence translocase complex4.07E-02
71GO:0005747: mitochondrial respiratory chain complex I4.23E-02
72GO:0005834: heterotrimeric G-protein complex4.37E-02
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Gene type



Gene DE type