Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0055065: metal ion homeostasis0.00E+00
2GO:0010190: cytochrome b6f complex assembly6.91E-06
3GO:0071806: protein transmembrane transport4.88E-05
4GO:0048438: floral whorl development4.88E-05
5GO:0080005: photosystem stoichiometry adjustment1.20E-04
6GO:0010115: regulation of abscisic acid biosynthetic process1.20E-04
7GO:0048314: embryo sac morphogenesis1.20E-04
8GO:0048209: regulation of vesicle targeting, to, from or within Golgi1.20E-04
9GO:0006954: inflammatory response2.06E-04
10GO:0042274: ribosomal small subunit biogenesis4.04E-04
11GO:0031935: regulation of chromatin silencing4.04E-04
12GO:0009765: photosynthesis, light harvesting4.04E-04
13GO:0006552: leucine catabolic process4.04E-04
14GO:0016123: xanthophyll biosynthetic process5.13E-04
15GO:0031365: N-terminal protein amino acid modification5.13E-04
16GO:0016120: carotene biosynthetic process5.13E-04
17GO:0006561: proline biosynthetic process6.29E-04
18GO:0009910: negative regulation of flower development6.67E-04
19GO:0010076: maintenance of floral meristem identity7.50E-04
20GO:1900056: negative regulation of leaf senescence8.75E-04
21GO:0080111: DNA demethylation8.75E-04
22GO:0048564: photosystem I assembly1.01E-03
23GO:0006605: protein targeting1.01E-03
24GO:0010380: regulation of chlorophyll biosynthetic process1.43E-03
25GO:0009688: abscisic acid biosynthetic process1.59E-03
26GO:0045036: protein targeting to chloroplast1.59E-03
27GO:0009750: response to fructose1.75E-03
28GO:0010582: floral meristem determinacy1.91E-03
29GO:0009767: photosynthetic electron transport chain2.08E-03
30GO:0009266: response to temperature stimulus2.26E-03
31GO:0090351: seedling development2.44E-03
32GO:0007017: microtubule-based process3.01E-03
33GO:0051321: meiotic cell cycle3.20E-03
34GO:0016226: iron-sulfur cluster assembly3.41E-03
35GO:0006284: base-excision repair3.82E-03
36GO:0016117: carotenoid biosynthetic process4.04E-03
37GO:0010182: sugar mediated signaling pathway4.48E-03
38GO:0009658: chloroplast organization4.55E-03
39GO:0009791: post-embryonic development4.94E-03
40GO:0006891: intra-Golgi vesicle-mediated transport5.18E-03
41GO:0009816: defense response to bacterium, incompatible interaction6.94E-03
42GO:0006906: vesicle fusion7.20E-03
43GO:0006888: ER to Golgi vesicle-mediated transport7.48E-03
44GO:0032259: methylation7.96E-03
45GO:0048767: root hair elongation8.31E-03
46GO:0007568: aging8.88E-03
47GO:0006865: amino acid transport9.17E-03
48GO:0000724: double-strand break repair via homologous recombination9.17E-03
49GO:0009853: photorespiration9.47E-03
50GO:0051707: response to other organism1.13E-02
51GO:0031347: regulation of defense response1.30E-02
52GO:0000165: MAPK cascade1.30E-02
53GO:0016569: covalent chromatin modification1.72E-02
54GO:0009553: embryo sac development1.76E-02
55GO:0006508: proteolysis2.44E-02
56GO:0016036: cellular response to phosphate starvation2.52E-02
57GO:0010228: vegetative to reproductive phase transition of meristem2.73E-02
58GO:0055114: oxidation-reduction process2.83E-02
59GO:0010468: regulation of gene expression3.00E-02
60GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.42E-02
61GO:0016192: vesicle-mediated transport4.36E-02
62GO:0046777: protein autophosphorylation4.41E-02
63GO:0045892: negative regulation of transcription, DNA-templated4.84E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0016491: oxidoreductase activity4.27E-05
4GO:0030941: chloroplast targeting sequence binding4.88E-05
5GO:0004485: methylcrotonoyl-CoA carboxylase activity4.88E-05
6GO:0004180: carboxypeptidase activity2.06E-04
7GO:0000900: translation repressor activity, nucleic acid binding2.06E-04
8GO:0004075: biotin carboxylase activity2.06E-04
9GO:0032947: protein complex scaffold2.06E-04
10GO:0051861: glycolipid binding4.04E-04
11GO:0005275: amine transmembrane transporter activity5.13E-04
12GO:0008235: metalloexopeptidase activity8.75E-04
13GO:0035064: methylated histone binding1.01E-03
14GO:0004177: aminopeptidase activity1.75E-03
15GO:0009982: pseudouridine synthase activity2.08E-03
16GO:0004022: alcohol dehydrogenase (NAD) activity2.08E-03
17GO:0051536: iron-sulfur cluster binding2.81E-03
18GO:0008168: methyltransferase activity4.38E-03
19GO:0008080: N-acetyltransferase activity4.48E-03
20GO:0048038: quinone binding5.18E-03
21GO:0008483: transaminase activity6.16E-03
22GO:0008236: serine-type peptidase activity7.75E-03
23GO:0050897: cobalt ion binding8.88E-03
24GO:0000149: SNARE binding1.01E-02
25GO:0042393: histone binding1.04E-02
26GO:0005484: SNAP receptor activity1.13E-02
27GO:0005198: structural molecule activity1.23E-02
28GO:0003777: microtubule motor activity1.50E-02
29GO:0031625: ubiquitin protein ligase binding1.50E-02
30GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.14E-02
31GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.31E-02
32GO:0008233: peptidase activity4.16E-02
33GO:0061630: ubiquitin protein ligase activity4.36E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.47E-07
2GO:0009528: plastid inner membrane2.06E-04
3GO:0005797: Golgi medial cisterna2.06E-04
4GO:0030286: dynein complex4.04E-04
5GO:0005801: cis-Golgi network7.50E-04
6GO:0000123: histone acetyltransferase complex8.75E-04
7GO:0031359: integral component of chloroplast outer membrane8.75E-04
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.28E-03
9GO:0009508: plastid chromosome2.08E-03
10GO:0005875: microtubule associated complex2.62E-03
11GO:0042651: thylakoid membrane3.01E-03
12GO:0045271: respiratory chain complex I3.01E-03
13GO:0031969: chloroplast membrane5.63E-03
14GO:0009295: nucleoid6.16E-03
15GO:0009707: chloroplast outer membrane8.03E-03
16GO:0031201: SNARE complex1.07E-02
17GO:0031966: mitochondrial membrane1.33E-02
18GO:0005747: mitochondrial respiratory chain complex I1.61E-02
19GO:0009535: chloroplast thylakoid membrane1.64E-02
20GO:0009534: chloroplast thylakoid1.79E-02
21GO:0005759: mitochondrial matrix2.47E-02
22GO:0000139: Golgi membrane4.05E-02
23GO:0005773: vacuole4.79E-02
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Gene type



Gene DE type