co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071034: CUT catabolic process	0.00E+00
2	GO:0000467: exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
3	GO:0071049: nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	0.00E+00
4	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
5	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
6	GO:0043928: exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	0.00E+00
7	GO:0071035: nuclear polyadenylation-dependent rRNA catabolic process	0.00E+00
8	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
9	GO:0031591: wybutosine biosynthetic process	0.00E+00
10	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
11	GO:0071038: nuclear polyadenylation-dependent tRNA catabolic process	0.00E+00
12	GO:0006364: rRNA processing	1.82E-18
13	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.35E-08
14	GO:0010501: RNA secondary structure unwinding	2.05E-07
15	GO:0009553: embryo sac development	1.85E-05
16	GO:0043985: histone H4-R3 methylation	7.23E-05
17	GO:0031120: snRNA pseudouridine synthesis	7.23E-05
18	GO:0000469: cleavage involved in rRNA processing	7.23E-05
19	GO:0031118: rRNA pseudouridine synthesis	7.23E-05
20	GO:0030490: maturation of SSU-rRNA	7.23E-05
21	GO:0006177: GMP biosynthetic process	7.23E-05
22	GO:0042254: ribosome biogenesis	1.30E-04
23	GO:0034475: U4 snRNA 3'-end processing	1.74E-04
24	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.74E-04
25	GO:0080009: mRNA methylation	1.74E-04
26	GO:0045041: protein import into mitochondrial intermembrane space	1.74E-04
27	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	1.74E-04
28	GO:0060149: negative regulation of posttranscriptional gene silencing	1.74E-04
29	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	2.93E-04
30	GO:0045604: regulation of epidermal cell differentiation	2.93E-04
31	GO:0007276: gamete generation	4.23E-04
32	GO:0051131: chaperone-mediated protein complex assembly	4.23E-04
33	GO:0048825: cotyledon development	4.81E-04
34	GO:0042273: ribosomal large subunit biogenesis	5.65E-04
35	GO:0000460: maturation of 5.8S rRNA	5.65E-04
36	GO:0006479: protein methylation	5.65E-04
37	GO:1900864: mitochondrial RNA modification	5.65E-04
38	GO:0046345: abscisic acid catabolic process	5.65E-04
39	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	8.73E-04
40	GO:0042026: protein refolding	1.04E-03
41	GO:0006458: 'de novo' protein folding	1.04E-03
42	GO:0048444: floral organ morphogenesis	1.04E-03
43	GO:0010077: maintenance of inflorescence meristem identity	1.04E-03
44	GO:0006400: tRNA modification	1.21E-03
45	GO:0045995: regulation of embryonic development	1.21E-03
46	GO:0042255: ribosome assembly	1.40E-03
47	GO:0001522: pseudouridine synthesis	1.40E-03
48	GO:0000028: ribosomal small subunit assembly	1.40E-03
49	GO:0006261: DNA-dependent DNA replication	1.59E-03
50	GO:2000024: regulation of leaf development	1.80E-03
51	GO:1900865: chloroplast RNA modification	2.01E-03
52	GO:0032259: methylation	2.13E-03
53	GO:0010582: floral meristem determinacy	2.70E-03
54	GO:2000012: regulation of auxin polar transport	2.94E-03
55	GO:0006541: glutamine metabolic process	3.19E-03
56	GO:0010030: positive regulation of seed germination	3.44E-03
57	GO:0051302: regulation of cell division	4.26E-03
58	GO:0061077: chaperone-mediated protein folding	4.54E-03
59	GO:0007005: mitochondrion organization	4.83E-03
60	GO:0009451: RNA modification	5.02E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	6.05E-03
62	GO:0006457: protein folding	6.43E-03
63	GO:0000154: rRNA modification	1.77E-02
64	GO:0006260: DNA replication	1.86E-02
65	GO:0046686: response to cadmium ion	1.99E-02
66	GO:0006417: regulation of translation	2.16E-02
67	GO:0009555: pollen development	2.48E-02
68	GO:0006396: RNA processing	2.64E-02
69	GO:0000398: mRNA splicing, via spliceosome	2.86E-02
70	GO:0009793: embryo development ending in seed dormancy	3.26E-02
71	GO:0007166: cell surface receptor signaling pathway	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
2	GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	0.00E+00
3	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0016018: cyclosporin A binding	0.00E+00
5	GO:0003723: RNA binding	3.75E-12
6	GO:0004004: ATP-dependent RNA helicase activity	2.23E-08
7	GO:0000166: nucleotide binding	4.46E-08
8	GO:0008026: ATP-dependent helicase activity	8.02E-07
9	GO:0030515: snoRNA binding	2.60E-05
10	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.23E-05
11	GO:0001054: RNA polymerase I activity	9.43E-05
12	GO:0008168: methyltransferase activity	1.18E-04
13	GO:0043021: ribonucleoprotein complex binding	1.74E-04
14	GO:0003938: IMP dehydrogenase activity	1.74E-04
15	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.89E-04
16	GO:0070181: small ribosomal subunit rRNA binding	2.93E-04
17	GO:0004527: exonuclease activity	4.18E-04
18	GO:0003689: DNA clamp loader activity	7.14E-04
19	GO:0016462: pyrophosphatase activity	8.73E-04
20	GO:0003729: mRNA binding	9.92E-04
21	GO:0043022: ribosome binding	1.40E-03
22	GO:0008173: RNA methyltransferase activity	1.59E-03
23	GO:0044183: protein binding involved in protein folding	2.46E-03
24	GO:0004519: endonuclease activity	2.49E-03
25	GO:0004521: endoribonuclease activity	2.70E-03
26	GO:0001056: RNA polymerase III activity	2.70E-03
27	GO:0051082: unfolded protein binding	2.86E-03
28	GO:0009982: pseudouridine synthase activity	2.94E-03
29	GO:0003887: DNA-directed DNA polymerase activity	3.71E-03
30	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.11E-02
31	GO:0005524: ATP binding	1.29E-02
32	GO:0003746: translation elongation factor activity	1.36E-02
33	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.40E-02
34	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.81E-02
35	GO:0003676: nucleic acid binding	2.04E-02
36	GO:0016887: ATPase activity	2.16E-02
37	GO:0016787: hydrolase activity	2.96E-02
38	GO:0016740: transferase activity	3.02E-02
39	GO:0019843: rRNA binding	3.03E-02
40	GO:0005525: GTP binding	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0036396: MIS complex	0.00E+00
3	GO:0005730: nucleolus	5.43E-16
4	GO:0032040: small-subunit processome	5.86E-11
5	GO:0005634: nucleus	7.31E-07
6	GO:0030687: preribosome, large subunit precursor	2.60E-05
7	GO:0005736: DNA-directed RNA polymerase I complex	5.45E-05
8	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	7.23E-05
9	GO:0030688: preribosome, small subunit precursor	7.23E-05
10	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.48E-04
11	GO:0070545: PeBoW complex	1.74E-04
12	GO:0000177: cytoplasmic exosome (RNase complex)	1.74E-04
13	GO:0000176: nuclear exosome (RNase complex)	2.93E-04
14	GO:0031429: box H/ACA snoRNP complex	4.23E-04
15	GO:0005663: DNA replication factor C complex	5.65E-04
16	GO:0031428: box C/D snoRNP complex	8.73E-04
17	GO:0034399: nuclear periphery	1.40E-03
18	GO:0005666: DNA-directed RNA polymerase III complex	2.01E-03
19	GO:0042651: thylakoid membrane	4.26E-03
20	GO:0005759: mitochondrial matrix	4.47E-03
21	GO:0005829: cytosol	4.79E-03
22	GO:0019898: extrinsic component of membrane	7.04E-03
23	GO:0005618: cell wall	1.93E-02
24	GO:0005681: spliceosomal complex	2.26E-02
25	GO:0016607: nuclear speck	2.31E-02
26	GO:0005654: nucleoplasm	2.97E-02
27	GO:0009506: plasmodesma	4.28E-02