Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0009715: chalcone biosynthetic process0.00E+00
5GO:0017009: protein-phycocyanobilin linkage0.00E+00
6GO:0009304: tRNA transcription0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0019447: D-cysteine catabolic process0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0018316: peptide cross-linking via L-cystine0.00E+00
11GO:0015882: L-ascorbic acid transport0.00E+00
12GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
13GO:0051246: regulation of protein metabolic process0.00E+00
14GO:1905157: positive regulation of photosynthesis0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
17GO:0016123: xanthophyll biosynthetic process7.12E-07
18GO:0019253: reductive pentose-phosphate cycle1.28E-06
19GO:0015979: photosynthesis2.18E-06
20GO:0015995: chlorophyll biosynthetic process2.88E-06
21GO:0018298: protein-chromophore linkage3.77E-06
22GO:0055114: oxidation-reduction process4.46E-06
23GO:0090391: granum assembly1.18E-05
24GO:0019761: glucosinolate biosynthetic process2.28E-05
25GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.67E-05
26GO:0009735: response to cytokinin2.99E-05
27GO:0006006: glucose metabolic process4.22E-05
28GO:0009767: photosynthetic electron transport chain4.22E-05
29GO:0009902: chloroplast relocation4.83E-05
30GO:0016120: carotene biosynthetic process7.68E-05
31GO:0009643: photosynthetic acclimation1.12E-04
32GO:0050665: hydrogen peroxide biosynthetic process1.12E-04
33GO:0009854: oxidative photosynthetic carbon pathway1.53E-04
34GO:0048564: photosystem I assembly2.55E-04
35GO:0006419: alanyl-tRNA aminoacylation2.68E-04
36GO:0010362: negative regulation of anion channel activity by blue light2.68E-04
37GO:0009443: pyridoxal 5'-phosphate salvage2.68E-04
38GO:0031426: polycistronic mRNA processing2.68E-04
39GO:0033506: glucosinolate biosynthetic process from homomethionine2.68E-04
40GO:1904966: positive regulation of vitamin E biosynthetic process2.68E-04
41GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.68E-04
42GO:0051775: response to redox state2.68E-04
43GO:0071277: cellular response to calcium ion2.68E-04
44GO:1904964: positive regulation of phytol biosynthetic process2.68E-04
45GO:0042371: vitamin K biosynthetic process2.68E-04
46GO:0071454: cellular response to anoxia2.68E-04
47GO:0010028: xanthophyll cycle2.68E-04
48GO:0009791: post-embryonic development2.85E-04
49GO:0009657: plastid organization3.14E-04
50GO:0009658: chloroplast organization4.45E-04
51GO:0009638: phototropism4.50E-04
52GO:0009098: leucine biosynthetic process4.50E-04
53GO:0042853: L-alanine catabolic process5.89E-04
54GO:0046741: transport of virus in host, tissue to tissue5.89E-04
55GO:0009629: response to gravity5.89E-04
56GO:0080005: photosystem stoichiometry adjustment5.89E-04
57GO:1902326: positive regulation of chlorophyll biosynthetic process5.89E-04
58GO:0019752: carboxylic acid metabolic process5.89E-04
59GO:2000030: regulation of response to red or far red light5.89E-04
60GO:0030187: melatonin biosynthetic process5.89E-04
61GO:0000256: allantoin catabolic process5.89E-04
62GO:0006435: threonyl-tRNA aminoacylation5.89E-04
63GO:0006729: tetrahydrobiopterin biosynthetic process5.89E-04
64GO:0080153: negative regulation of reductive pentose-phosphate cycle5.89E-04
65GO:0018119: peptidyl-cysteine S-nitrosylation6.07E-04
66GO:0046686: response to cadmium ion9.27E-04
67GO:0010136: ureide catabolic process9.55E-04
68GO:0009405: pathogenesis9.55E-04
69GO:0006013: mannose metabolic process9.55E-04
70GO:0005977: glycogen metabolic process9.55E-04
71GO:0009744: response to sucrose1.31E-03
72GO:0009768: photosynthesis, light harvesting in photosystem I1.33E-03
73GO:0007017: microtubule-based process1.33E-03
74GO:0006107: oxaloacetate metabolic process1.36E-03
75GO:0010239: chloroplast mRNA processing1.36E-03
76GO:0090307: mitotic spindle assembly1.36E-03
77GO:0006809: nitric oxide biosynthetic process1.36E-03
78GO:0006145: purine nucleobase catabolic process1.36E-03
79GO:0046739: transport of virus in multicellular host1.36E-03
80GO:0042989: sequestering of actin monomers1.36E-03
81GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.36E-03
82GO:0043572: plastid fission1.36E-03
83GO:0009067: aspartate family amino acid biosynthetic process1.36E-03
84GO:0009765: photosynthesis, light harvesting1.83E-03
85GO:0031122: cytoplasmic microtubule organization1.83E-03
86GO:0006734: NADH metabolic process1.83E-03
87GO:0010021: amylopectin biosynthetic process1.83E-03
88GO:0016558: protein import into peroxisome matrix2.33E-03
89GO:0030041: actin filament polymerization2.33E-03
90GO:0043097: pyrimidine nucleoside salvage2.33E-03
91GO:0006096: glycolytic process2.36E-03
92GO:0009793: embryo development ending in seed dormancy2.38E-03
93GO:0006206: pyrimidine nucleobase metabolic process2.88E-03
94GO:0000741: karyogamy2.88E-03
95GO:0010193: response to ozone2.94E-03
96GO:0071470: cellular response to osmotic stress3.46E-03
97GO:0010189: vitamin E biosynthetic process3.46E-03
98GO:0009088: threonine biosynthetic process3.46E-03
99GO:0009416: response to light stimulus3.54E-03
100GO:0009772: photosynthetic electron transport in photosystem II4.08E-03
101GO:0010196: nonphotochemical quenching4.08E-03
102GO:0009645: response to low light intensity stimulus4.08E-03
103GO:0006400: tRNA modification4.08E-03
104GO:0051510: regulation of unidimensional cell growth4.08E-03
105GO:0006401: RNA catabolic process4.08E-03
106GO:0010027: thylakoid membrane organization4.25E-03
107GO:0009058: biosynthetic process4.25E-03
108GO:0006402: mRNA catabolic process4.73E-03
109GO:0009642: response to light intensity4.73E-03
110GO:0009704: de-etiolation4.73E-03
111GO:0031540: regulation of anthocyanin biosynthetic process4.73E-03
112GO:0006811: ion transport6.11E-03
113GO:0098656: anion transmembrane transport6.14E-03
114GO:0009051: pentose-phosphate shunt, oxidative branch6.14E-03
115GO:0009821: alkaloid biosynthetic process6.14E-03
116GO:0006098: pentose-phosphate shunt6.14E-03
117GO:0090333: regulation of stomatal closure6.14E-03
118GO:0048507: meristem development6.14E-03
119GO:0000373: Group II intron splicing6.14E-03
120GO:0009409: response to cold6.73E-03
121GO:0031425: chloroplast RNA processing6.90E-03
122GO:0009853: photorespiration7.02E-03
123GO:0009637: response to blue light7.02E-03
124GO:0045036: protein targeting to chloroplast7.68E-03
125GO:0009641: shade avoidance7.68E-03
126GO:0006949: syncytium formation7.68E-03
127GO:0006259: DNA metabolic process7.68E-03
128GO:0006265: DNA topological change8.50E-03
129GO:0009089: lysine biosynthetic process via diaminopimelate8.50E-03
130GO:0009773: photosynthetic electron transport in photosystem I8.50E-03
131GO:0010114: response to red light9.06E-03
132GO:0009644: response to high light intensity9.81E-03
133GO:0005986: sucrose biosynthetic process1.02E-02
134GO:0006108: malate metabolic process1.02E-02
135GO:0009725: response to hormone1.02E-02
136GO:0006094: gluconeogenesis1.02E-02
137GO:0034605: cellular response to heat1.11E-02
138GO:0010207: photosystem II assembly1.11E-02
139GO:0010020: chloroplast fission1.11E-02
140GO:0010223: secondary shoot formation1.11E-02
141GO:0090351: seedling development1.21E-02
142GO:0006364: rRNA processing1.22E-02
143GO:0009585: red, far-red light phototransduction1.22E-02
144GO:0010224: response to UV-B1.27E-02
145GO:0080167: response to karrikin1.37E-02
146GO:0080147: root hair cell development1.40E-02
147GO:0007010: cytoskeleton organization1.40E-02
148GO:0051302: regulation of cell division1.50E-02
149GO:0006730: one-carbon metabolic process1.71E-02
150GO:0080092: regulation of pollen tube growth1.71E-02
151GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.82E-02
152GO:0009693: ethylene biosynthetic process1.82E-02
153GO:0009625: response to insect1.82E-02
154GO:0009306: protein secretion1.94E-02
155GO:0016117: carotenoid biosynthetic process2.05E-02
156GO:0070417: cellular response to cold2.05E-02
157GO:0008033: tRNA processing2.17E-02
158GO:0010118: stomatal movement2.17E-02
159GO:0006606: protein import into nucleus2.17E-02
160GO:0010197: polar nucleus fusion2.29E-02
161GO:0048868: pollen tube development2.29E-02
162GO:0006810: transport2.33E-02
163GO:0009845: seed germination2.37E-02
164GO:0015986: ATP synthesis coupled proton transport2.41E-02
165GO:0006814: sodium ion transport2.41E-02
166GO:0007059: chromosome segregation2.41E-02
167GO:0019252: starch biosynthetic process2.53E-02
168GO:0008654: phospholipid biosynthetic process2.53E-02
169GO:0000302: response to reactive oxygen species2.65E-02
170GO:0006635: fatty acid beta-oxidation2.65E-02
171GO:0016032: viral process2.78E-02
172GO:0006413: translational initiation2.82E-02
173GO:0007623: circadian rhythm3.02E-02
174GO:0009828: plant-type cell wall loosening3.04E-02
175GO:0009451: RNA modification3.09E-02
176GO:0009816: defense response to bacterium, incompatible interaction3.59E-02
177GO:0010468: regulation of gene expression3.60E-02
178GO:0042742: defense response to bacterium3.73E-02
179GO:0006979: response to oxidative stress3.77E-02
180GO:0010411: xyloglucan metabolic process3.88E-02
181GO:0009817: defense response to fungus, incompatible interaction4.17E-02
182GO:0009813: flavonoid biosynthetic process4.32E-02
183GO:0000160: phosphorelay signal transduction system4.32E-02
184GO:0009407: toxin catabolic process4.47E-02
185GO:0010218: response to far red light4.47E-02
186GO:0048527: lateral root development4.62E-02
187GO:0007568: aging4.62E-02
188GO:0009611: response to wounding4.69E-02
189GO:0042254: ribosome biogenesis4.74E-02
RankGO TermAdjusted P value
1GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity0.00E+00
7GO:0019148: D-cysteine desulfhydrase activity0.00E+00
8GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
9GO:0010276: phytol kinase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0008974: phosphoribulokinase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0004760: serine-pyruvate transaminase activity0.00E+00
14GO:0042623: ATPase activity, coupled0.00E+00
15GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
16GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
17GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
18GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
19GO:0050281: serine-glyoxylate transaminase activity0.00E+00
20GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity3.29E-06
21GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.67E-05
22GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.67E-05
23GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.67E-05
24GO:0016491: oxidoreductase activity3.67E-05
25GO:0016168: chlorophyll binding4.68E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.83E-05
27GO:0008453: alanine-glyoxylate transaminase activity4.83E-05
28GO:0008891: glycolate oxidase activity4.83E-05
29GO:0000293: ferric-chelate reductase activity1.12E-04
30GO:0019899: enzyme binding2.02E-04
31GO:0010181: FMN binding2.59E-04
32GO:0004451: isocitrate lyase activity2.68E-04
33GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.68E-04
34GO:0004813: alanine-tRNA ligase activity2.68E-04
35GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity2.68E-04
36GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity2.68E-04
37GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.68E-04
38GO:0008746: NAD(P)+ transhydrogenase activity2.68E-04
39GO:0030941: chloroplast targeting sequence binding2.68E-04
40GO:0004654: polyribonucleotide nucleotidyltransferase activity2.68E-04
41GO:0035671: enone reductase activity2.68E-04
42GO:0048038: quinone binding3.12E-04
43GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity5.89E-04
44GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity5.89E-04
45GO:0004829: threonine-tRNA ligase activity5.89E-04
46GO:0019156: isoamylase activity5.89E-04
47GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity5.89E-04
48GO:0003862: 3-isopropylmalate dehydrogenase activity5.89E-04
49GO:0005089: Rho guanyl-nucleotide exchange factor activity6.07E-04
50GO:0010277: chlorophyllide a oxygenase [overall] activity9.55E-04
51GO:0004148: dihydrolipoyl dehydrogenase activity9.55E-04
52GO:0050307: sucrose-phosphate phosphatase activity9.55E-04
53GO:0003861: 3-isopropylmalate dehydratase activity9.55E-04
54GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity9.55E-04
55GO:0030267: glyoxylate reductase (NADP) activity9.55E-04
56GO:0070402: NADPH binding9.55E-04
57GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.55E-04
58GO:0031409: pigment binding1.10E-03
59GO:0050661: NADP binding1.12E-03
60GO:0004072: aspartate kinase activity1.36E-03
61GO:0048027: mRNA 5'-UTR binding1.36E-03
62GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.36E-03
63GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.36E-03
64GO:0022890: inorganic cation transmembrane transporter activity1.36E-03
65GO:0016851: magnesium chelatase activity1.36E-03
66GO:0009882: blue light photoreceptor activity1.36E-03
67GO:0008508: bile acid:sodium symporter activity1.36E-03
68GO:0051287: NAD binding1.66E-03
69GO:0022891: substrate-specific transmembrane transporter activity1.74E-03
70GO:0051861: glycolipid binding1.83E-03
71GO:0043015: gamma-tubulin binding1.83E-03
72GO:0043495: protein anchor1.83E-03
73GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.83E-03
74GO:0004345: glucose-6-phosphate dehydrogenase activity1.83E-03
75GO:0016836: hydro-lyase activity1.83E-03
76GO:0051011: microtubule minus-end binding2.33E-03
77GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.33E-03
78GO:0003785: actin monomer binding2.33E-03
79GO:0004332: fructose-bisphosphate aldolase activity2.88E-03
80GO:0004556: alpha-amylase activity2.88E-03
81GO:0016615: malate dehydrogenase activity2.88E-03
82GO:0004605: phosphatidate cytidylyltransferase activity2.88E-03
83GO:0004849: uridine kinase activity3.46E-03
84GO:0015631: tubulin binding3.46E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.46E-03
86GO:0030060: L-malate dehydrogenase activity3.46E-03
87GO:0004559: alpha-mannosidase activity3.46E-03
88GO:0016597: amino acid binding4.01E-03
89GO:0004033: aldo-keto reductase (NADP) activity4.73E-03
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.42E-03
91GO:0008135: translation factor activity, RNA binding5.42E-03
92GO:0050897: cobalt ion binding6.40E-03
93GO:0016844: strictosidine synthase activity6.90E-03
94GO:0003746: translation elongation factor activity7.02E-03
95GO:0015386: potassium:proton antiporter activity8.50E-03
96GO:0001054: RNA polymerase I activity8.50E-03
97GO:0001056: RNA polymerase III activity9.35E-03
98GO:0000049: tRNA binding9.35E-03
99GO:0051537: 2 iron, 2 sulfur cluster binding9.81E-03
100GO:0000175: 3'-5'-exoribonuclease activity1.02E-02
101GO:0008081: phosphoric diester hydrolase activity1.02E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.02E-02
103GO:0004089: carbonate dehydratase activity1.02E-02
104GO:0000155: phosphorelay sensor kinase activity1.02E-02
105GO:0015079: potassium ion transmembrane transporter activity1.50E-02
106GO:0008514: organic anion transmembrane transporter activity1.94E-02
107GO:0004499: N,N-dimethylaniline monooxygenase activity1.94E-02
108GO:0003727: single-stranded RNA binding1.94E-02
109GO:0003924: GTPase activity2.24E-02
110GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.25E-02
111GO:0008080: N-acetyltransferase activity2.29E-02
112GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.29E-02
113GO:0016853: isomerase activity2.41E-02
114GO:0015299: solute:proton antiporter activity2.41E-02
115GO:0004872: receptor activity2.53E-02
116GO:0008565: protein transporter activity2.62E-02
117GO:0016762: xyloglucan:xyloglucosyl transferase activity2.65E-02
118GO:0008483: transaminase activity3.18E-02
119GO:0005200: structural constituent of cytoskeleton3.18E-02
120GO:0042802: identical protein binding3.83E-02
121GO:0016887: ATPase activity3.87E-02
122GO:0016798: hydrolase activity, acting on glycosyl bonds3.88E-02
123GO:0000287: magnesium ion binding4.57E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.58E-47
2GO:0009535: chloroplast thylakoid membrane2.96E-24
3GO:0009570: chloroplast stroma3.34E-23
4GO:0009941: chloroplast envelope9.49E-18
5GO:0009579: thylakoid5.24E-12
6GO:0009534: chloroplast thylakoid1.05E-09
7GO:0048046: apoplast5.06E-06
8GO:0010287: plastoglobule7.76E-06
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.19E-05
10GO:0031969: chloroplast membrane1.47E-05
11GO:0010319: stromule3.32E-05
12GO:0030286: dynein complex4.83E-05
13GO:0009654: photosystem II oxygen evolving complex9.96E-05
14GO:0031977: thylakoid lumen1.47E-04
15GO:0009782: photosystem I antenna complex2.68E-04
16GO:0009515: granal stacked thylakoid2.68E-04
17GO:0009523: photosystem II2.85E-04
18GO:0008274: gamma-tubulin ring complex5.89E-04
19GO:0009543: chloroplast thylakoid lumen6.96E-04
20GO:0009707: chloroplast outer membrane7.09E-04
21GO:0030095: chloroplast photosystem II8.84E-04
22GO:0033281: TAT protein transport complex9.55E-04
23GO:0010007: magnesium chelatase complex9.55E-04
24GO:0042651: thylakoid membrane1.33E-03
25GO:0000923: equatorial microtubule organizing center1.36E-03
26GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.83E-03
27GO:0019898: extrinsic component of membrane2.75E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.88E-03
29GO:0009706: chloroplast inner membrane2.98E-03
30GO:0005778: peroxisomal membrane3.78E-03
31GO:0031359: integral component of chloroplast outer membrane4.08E-03
32GO:0005777: peroxisome4.51E-03
33GO:0009539: photosystem II reaction center5.42E-03
34GO:0005736: DNA-directed RNA polymerase I complex6.14E-03
35GO:0000922: spindle pole6.14E-03
36GO:0042644: chloroplast nucleoid6.14E-03
37GO:0005666: DNA-directed RNA polymerase III complex6.90E-03
38GO:0016324: apical plasma membrane7.68E-03
39GO:0005938: cell cortex1.02E-02
40GO:0030076: light-harvesting complex1.21E-02
41GO:0043234: protein complex1.30E-02
42GO:0005875: microtubule associated complex1.30E-02
43GO:0009536: plastid1.72E-02
44GO:0015629: actin cytoskeleton1.82E-02
45GO:0016020: membrane2.08E-02
46GO:0009522: photosystem I2.41E-02
47GO:0005759: mitochondrial matrix2.75E-02
48GO:0009295: nucleoid3.18E-02
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Gene type



Gene DE type