co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0006412: translation	1.06E-17
6	GO:0015979: photosynthesis	1.06E-16
7	GO:0032544: plastid translation	2.27E-15
8	GO:0009735: response to cytokinin	5.24E-13
9	GO:0042254: ribosome biogenesis	2.25E-10
10	GO:0009409: response to cold	7.24E-10
11	GO:0019464: glycine decarboxylation via glycine cleavage system	1.34E-07
12	GO:0043085: positive regulation of catalytic activity	1.26E-05
13	GO:0042742: defense response to bacterium	1.31E-05
14	GO:0005983: starch catabolic process	1.60E-05
15	GO:0010027: thylakoid membrane organization	1.66E-05
16	GO:0045454: cell redox homeostasis	5.79E-05
17	GO:0010196: nonphotochemical quenching	1.22E-04
18	GO:0009645: response to low light intensity stimulus	1.22E-04
19	GO:0019252: starch biosynthetic process	1.50E-04
20	GO:0005978: glycogen biosynthetic process	1.56E-04
21	GO:0009658: chloroplast organization	1.82E-04
22	GO:0000023: maltose metabolic process	1.93E-04
23	GO:0000025: maltose catabolic process	1.93E-04
24	GO:0043489: RNA stabilization	1.93E-04
25	GO:0044262: cellular carbohydrate metabolic process	1.93E-04
26	GO:0015995: chlorophyll biosynthetic process	3.43E-04
27	GO:0009773: photosynthetic electron transport in photosystem I	3.85E-04
28	GO:0009817: defense response to fungus, incompatible interaction	3.92E-04
29	GO:0055114: oxidation-reduction process	3.95E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.33E-04
31	GO:0010270: photosystem II oxygen evolving complex assembly	4.33E-04
32	GO:1904961: quiescent center organization	4.33E-04
33	GO:0019388: galactose catabolic process	4.33E-04
34	GO:0005976: polysaccharide metabolic process	4.33E-04
35	GO:0034599: cellular response to oxidative stress	5.64E-04
36	GO:0006000: fructose metabolic process	7.06E-04
37	GO:0010581: regulation of starch biosynthetic process	7.06E-04
38	GO:0071367: cellular response to brassinosteroid stimulus	7.06E-04
39	GO:0009768: photosynthesis, light harvesting in photosystem I	8.55E-04
40	GO:0051085: chaperone mediated protein folding requiring cofactor	1.01E-03
41	GO:0006241: CTP biosynthetic process	1.01E-03
42	GO:0006165: nucleoside diphosphate phosphorylation	1.01E-03
43	GO:0006228: UTP biosynthetic process	1.01E-03
44	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.01E-03
45	GO:0010731: protein glutathionylation	1.01E-03
46	GO:0009590: detection of gravity	1.01E-03
47	GO:0015976: carbon utilization	1.34E-03
48	GO:0009765: photosynthesis, light harvesting	1.34E-03
49	GO:0006109: regulation of carbohydrate metabolic process	1.34E-03
50	GO:0006183: GTP biosynthetic process	1.34E-03
51	GO:0045727: positive regulation of translation	1.34E-03
52	GO:2000122: negative regulation of stomatal complex development	1.34E-03
53	GO:0006546: glycine catabolic process	1.34E-03
54	GO:0010021: amylopectin biosynthetic process	1.34E-03
55	GO:0010037: response to carbon dioxide	1.34E-03
56	GO:0006808: regulation of nitrogen utilization	1.34E-03
57	GO:0006662: glycerol ether metabolic process	1.51E-03
58	GO:0006544: glycine metabolic process	1.70E-03
59	GO:0006461: protein complex assembly	1.70E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.10E-03
61	GO:0000470: maturation of LSU-rRNA	2.10E-03
62	GO:0006828: manganese ion transport	2.10E-03
63	GO:0010190: cytochrome b6f complex assembly	2.10E-03
64	GO:0006563: L-serine metabolic process	2.10E-03
65	GO:0009955: adaxial/abaxial pattern specification	2.52E-03
66	GO:0042026: protein refolding	2.52E-03
67	GO:1901259: chloroplast rRNA processing	2.52E-03
68	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.52E-03
69	GO:0010555: response to mannitol	2.52E-03
70	GO:0007623: circadian rhythm	3.29E-03
71	GO:0009642: response to light intensity	3.43E-03
72	GO:0030091: protein repair	3.43E-03
73	GO:0018298: protein-chromophore linkage	3.47E-03
74	GO:0006002: fructose 6-phosphate metabolic process	3.93E-03
75	GO:0009657: plastid organization	3.93E-03
76	GO:0019430: removal of superoxide radicals	3.93E-03
77	GO:0009853: photorespiration	4.40E-03
78	GO:0010206: photosystem II repair	4.44E-03
79	GO:0006783: heme biosynthetic process	4.44E-03
80	GO:0035999: tetrahydrofolate interconversion	4.99E-03
81	GO:0010380: regulation of chlorophyll biosynthetic process	4.99E-03
82	GO:0005982: starch metabolic process	4.99E-03
83	GO:0006979: response to oxidative stress	5.39E-03
84	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
85	GO:0009644: response to high light intensity	6.12E-03
86	GO:0006816: calcium ion transport	6.13E-03
87	GO:0006415: translational termination	6.13E-03
88	GO:0009750: response to fructose	6.13E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	6.13E-03
90	GO:0006094: gluconeogenesis	7.36E-03
91	GO:0009767: photosynthetic electron transport chain	7.36E-03
92	GO:0005986: sucrose biosynthetic process	7.36E-03
93	GO:0006006: glucose metabolic process	7.36E-03
94	GO:0009266: response to temperature stimulus	8.01E-03
95	GO:0010020: chloroplast fission	8.01E-03
96	GO:0019253: reductive pentose-phosphate cycle	8.01E-03
97	GO:0006636: unsaturated fatty acid biosynthetic process	9.35E-03
98	GO:0006457: protein folding	9.51E-03
99	GO:0019344: cysteine biosynthetic process	1.01E-02
100	GO:0000027: ribosomal large subunit assembly	1.01E-02
101	GO:0006289: nucleotide-excision repair	1.01E-02
102	GO:0006810: transport	1.04E-02
103	GO:0006418: tRNA aminoacylation for protein translation	1.08E-02
104	GO:0061077: chaperone-mediated protein folding	1.15E-02
105	GO:0016114: terpenoid biosynthetic process	1.15E-02
106	GO:0046686: response to cadmium ion	1.15E-02
107	GO:0007005: mitochondrion organization	1.23E-02
108	GO:0009411: response to UV	1.31E-02
109	GO:0009306: protein secretion	1.39E-02
110	GO:0008152: metabolic process	1.40E-02
111	GO:0042744: hydrogen peroxide catabolic process	1.55E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.55E-02
113	GO:0009790: embryo development	1.59E-02
114	GO:0015986: ATP synthesis coupled proton transport	1.72E-02
115	GO:0000302: response to reactive oxygen species	1.90E-02
116	GO:0009627: systemic acquired resistance	2.67E-02
117	GO:0016311: dephosphorylation	2.88E-02
118	GO:0048481: plant ovule development	2.98E-02
119	GO:0008219: cell death	2.98E-02
120	GO:0010218: response to far red light	3.20E-02
121	GO:0009631: cold acclimation	3.31E-02
122	GO:0010119: regulation of stomatal movement	3.31E-02
123	GO:0045087: innate immune response	3.53E-02
124	GO:0009637: response to blue light	3.53E-02
125	GO:0080167: response to karrikin	3.62E-02
126	GO:0042542: response to hydrogen peroxide	4.11E-02
127	GO:0010114: response to red light	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0019843: rRNA binding	5.40E-24
8	GO:0003735: structural constituent of ribosome	4.08E-20
9	GO:0008266: poly(U) RNA binding	4.50E-07
10	GO:0005528: FK506 binding	9.83E-07
11	GO:0051920: peroxiredoxin activity	1.05E-06
12	GO:0016209: antioxidant activity	2.63E-06
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.11E-06
14	GO:0008047: enzyme activator activity	9.75E-06
15	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.50E-05
16	GO:0004791: thioredoxin-disulfide reductase activity	1.35E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.93E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	1.93E-04
19	GO:0004856: xylulokinase activity	1.93E-04
20	GO:0009496: plastoquinol--plastocyanin reductase activity	1.93E-04
21	GO:0004134: 4-alpha-glucanotransferase activity	1.93E-04
22	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.93E-04
23	GO:0019203: carbohydrate phosphatase activity	1.93E-04
24	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.99E-04
25	GO:0016168: chlorophyll binding	2.97E-04
26	GO:0004618: phosphoglycerate kinase activity	4.33E-04
27	GO:0010297: heteropolysaccharide binding	4.33E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	4.33E-04
29	GO:0004750: ribulose-phosphate 3-epimerase activity	4.33E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.33E-04
31	GO:0018708: thiol S-methyltransferase activity	4.33E-04
32	GO:0008967: phosphoglycolate phosphatase activity	4.33E-04
33	GO:0004614: phosphoglucomutase activity	4.33E-04
34	GO:0042389: omega-3 fatty acid desaturase activity	4.33E-04
35	GO:0031409: pigment binding	7.02E-04
36	GO:0004324: ferredoxin-NADP+ reductase activity	7.06E-04
37	GO:0004373: glycogen (starch) synthase activity	7.06E-04
38	GO:0017150: tRNA dihydrouridine synthase activity	7.06E-04
39	GO:0002161: aminoacyl-tRNA editing activity	7.06E-04
40	GO:0004148: dihydrolipoyl dehydrogenase activity	7.06E-04
41	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	7.06E-04
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.06E-04
43	GO:0030267: glyoxylate reductase (NADP) activity	7.06E-04
44	GO:0016851: magnesium chelatase activity	1.01E-03
45	GO:0016149: translation release factor activity, codon specific	1.01E-03
46	GO:0004550: nucleoside diphosphate kinase activity	1.01E-03
47	GO:0043023: ribosomal large subunit binding	1.01E-03
48	GO:0004601: peroxidase activity	1.08E-03
49	GO:0047134: protein-disulfide reductase activity	1.30E-03
50	GO:0009011: starch synthase activity	1.34E-03
51	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.34E-03
52	GO:0050662: coenzyme binding	1.62E-03
53	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.70E-03
54	GO:0004372: glycine hydroxymethyltransferase activity	1.70E-03
55	GO:0003959: NADPH dehydrogenase activity	1.70E-03
56	GO:2001070: starch binding	2.10E-03
57	GO:0004130: cytochrome-c peroxidase activity	2.10E-03
58	GO:0016491: oxidoreductase activity	2.51E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.52E-03
60	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.52E-03
61	GO:0004602: glutathione peroxidase activity	2.52E-03
62	GO:0015078: hydrogen ion transmembrane transporter activity	3.93E-03
63	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.93E-03
64	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.44E-03
65	GO:0003747: translation release factor activity	4.44E-03
66	GO:0005384: manganese ion transmembrane transporter activity	4.99E-03
67	GO:0044183: protein binding involved in protein folding	6.13E-03
68	GO:0000049: tRNA binding	6.73E-03
69	GO:0004089: carbonate dehydratase activity	7.36E-03
70	GO:0015095: magnesium ion transmembrane transporter activity	7.36E-03
71	GO:0004857: enzyme inhibitor activity	1.01E-02
72	GO:0001046: core promoter sequence-specific DNA binding	1.01E-02
73	GO:0051082: unfolded protein binding	1.09E-02
74	GO:0015035: protein disulfide oxidoreductase activity	1.12E-02
75	GO:0022891: substrate-specific transmembrane transporter activity	1.31E-02
76	GO:0004812: aminoacyl-tRNA ligase activity	1.47E-02
77	GO:0004252: serine-type endopeptidase activity	1.52E-02
78	GO:0005515: protein binding	1.60E-02
79	GO:0005509: calcium ion binding	1.65E-02
80	GO:0048038: quinone binding	1.90E-02
81	GO:0008237: metallopeptidase activity	2.27E-02
82	GO:0030247: polysaccharide binding	2.77E-02
83	GO:0008236: serine-type peptidase activity	2.88E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.98E-02
85	GO:0004222: metalloendopeptidase activity	3.20E-02
86	GO:0003723: RNA binding	3.22E-02
87	GO:0003729: mRNA binding	3.35E-02
88	GO:0004364: glutathione transferase activity	4.11E-02
89	GO:0051537: 2 iron, 2 sulfur cluster binding	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	1.68E-87
5	GO:0009570: chloroplast stroma	2.22E-73
6	GO:0009941: chloroplast envelope	8.87E-63
7	GO:0009579: thylakoid	3.07E-53
8	GO:0009534: chloroplast thylakoid	3.64E-44
9	GO:0009535: chloroplast thylakoid membrane	2.52E-43
10	GO:0009543: chloroplast thylakoid lumen	2.12E-20
11	GO:0005840: ribosome	3.49E-19
12	GO:0031977: thylakoid lumen	4.21E-16
13	GO:0010319: stromule	2.92E-14
14	GO:0010287: plastoglobule	3.38E-09
15	GO:0048046: apoplast	3.22E-07
16	GO:0009654: photosystem II oxygen evolving complex	1.24E-06
17	GO:0019898: extrinsic component of membrane	6.52E-06
18	GO:0016020: membrane	6.67E-06
19	GO:0009295: nucleoid	1.30E-05
20	GO:0005960: glycine cleavage complex	1.50E-05
21	GO:0009508: plastid chromosome	2.00E-05
22	GO:0030095: chloroplast photosystem II	2.45E-05
23	GO:0009533: chloroplast stromal thylakoid	1.22E-04
24	GO:0009523: photosystem II	1.50E-04
25	GO:0009538: photosystem I reaction center	1.56E-04
26	GO:0009782: photosystem I antenna complex	1.93E-04
27	GO:0009706: chloroplast inner membrane	2.33E-04
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.36E-04
29	GO:0030093: chloroplast photosystem I	4.33E-04
30	GO:0000311: plastid large ribosomal subunit	4.41E-04
31	GO:0015934: large ribosomal subunit	4.74E-04
32	GO:0000312: plastid small ribosomal subunit	5.65E-04
33	GO:0030076: light-harvesting complex	6.32E-04
34	GO:0010007: magnesium chelatase complex	7.06E-04
35	GO:0015935: small ribosomal subunit	9.35E-04
36	GO:0009517: PSII associated light-harvesting complex II	1.34E-03
37	GO:0022626: cytosolic ribosome	1.43E-03
38	GO:0031969: chloroplast membrane	1.49E-03
39	GO:0022625: cytosolic large ribosomal subunit	1.60E-03
40	GO:0009522: photosystem I	1.62E-03
41	GO:0009512: cytochrome b6f complex	1.70E-03
42	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.10E-03
43	GO:0009536: plastid	2.18E-03
44	GO:0009840: chloroplastic endopeptidase Clp complex	2.52E-03
45	GO:0016272: prefoldin complex	2.52E-03
46	GO:0009501: amyloplast	3.43E-03
47	GO:0042644: chloroplast nucleoid	4.44E-03
48	GO:0005763: mitochondrial small ribosomal subunit	4.44E-03
49	GO:0009532: plastid stroma	1.15E-02
50	GO:0030529: intracellular ribonucleoprotein complex	2.47E-02
51	GO:0022627: cytosolic small ribosomal subunit	2.50E-02