GO Enrichment Analysis of Co-expressed Genes with
AT3G47470
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 3 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 4 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 5 | GO:0016118: carotenoid catabolic process | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 5.30E-31 |
| 7 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.67E-20 |
| 8 | GO:0018298: protein-chromophore linkage | 3.47E-17 |
| 9 | GO:0009645: response to low light intensity stimulus | 1.62E-10 |
| 10 | GO:0010196: nonphotochemical quenching | 1.62E-10 |
| 11 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.62E-10 |
| 12 | GO:0009644: response to high light intensity | 5.66E-10 |
| 13 | GO:0009773: photosynthetic electron transport in photosystem I | 2.72E-09 |
| 14 | GO:0042742: defense response to bacterium | 1.03E-07 |
| 15 | GO:0009416: response to light stimulus | 1.55E-07 |
| 16 | GO:0010206: photosystem II repair | 2.14E-07 |
| 17 | GO:0010218: response to far red light | 7.37E-07 |
| 18 | GO:0006094: gluconeogenesis | 8.75E-07 |
| 19 | GO:0010207: photosystem II assembly | 1.10E-06 |
| 20 | GO:0010114: response to red light | 1.78E-06 |
| 21 | GO:0042549: photosystem II stabilization | 7.27E-06 |
| 22 | GO:0006098: pentose-phosphate shunt | 3.12E-05 |
| 23 | GO:0009735: response to cytokinin | 3.71E-05 |
| 24 | GO:0009637: response to blue light | 4.15E-05 |
| 25 | GO:0080093: regulation of photorespiration | 5.03E-05 |
| 26 | GO:0031998: regulation of fatty acid beta-oxidation | 5.03E-05 |
| 27 | GO:0009409: response to cold | 5.05E-05 |
| 28 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.51E-05 |
| 29 | GO:0019684: photosynthesis, light reaction | 5.51E-05 |
| 30 | GO:0016124: xanthophyll catabolic process | 1.23E-04 |
| 31 | GO:0097054: L-glutamate biosynthetic process | 1.23E-04 |
| 32 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.23E-04 |
| 33 | GO:0016121: carotene catabolic process | 1.23E-04 |
| 34 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.23E-04 |
| 35 | GO:0035304: regulation of protein dephosphorylation | 1.23E-04 |
| 36 | GO:0009269: response to desiccation | 1.54E-04 |
| 37 | GO:0090391: granum assembly | 2.11E-04 |
| 38 | GO:0035436: triose phosphate transmembrane transport | 2.11E-04 |
| 39 | GO:1902448: positive regulation of shade avoidance | 2.11E-04 |
| 40 | GO:0006000: fructose metabolic process | 2.11E-04 |
| 41 | GO:0071484: cellular response to light intensity | 3.09E-04 |
| 42 | GO:0006537: glutamate biosynthetic process | 3.09E-04 |
| 43 | GO:0006021: inositol biosynthetic process | 4.15E-04 |
| 44 | GO:0010021: amylopectin biosynthetic process | 4.15E-04 |
| 45 | GO:0019676: ammonia assimilation cycle | 4.15E-04 |
| 46 | GO:0015976: carbon utilization | 4.15E-04 |
| 47 | GO:0009765: photosynthesis, light harvesting | 4.15E-04 |
| 48 | GO:0045727: positive regulation of translation | 4.15E-04 |
| 49 | GO:0015713: phosphoglycerate transport | 4.15E-04 |
| 50 | GO:0030104: water homeostasis | 4.15E-04 |
| 51 | GO:0010027: thylakoid membrane organization | 4.65E-04 |
| 52 | GO:0006097: glyoxylate cycle | 5.26E-04 |
| 53 | GO:0015995: chlorophyll biosynthetic process | 5.46E-04 |
| 54 | GO:0009635: response to herbicide | 6.44E-04 |
| 55 | GO:0009643: photosynthetic acclimation | 6.44E-04 |
| 56 | GO:0050665: hydrogen peroxide biosynthetic process | 6.44E-04 |
| 57 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 6.44E-04 |
| 58 | GO:0009854: oxidative photosynthetic carbon pathway | 7.68E-04 |
| 59 | GO:0009772: photosynthetic electron transport in photosystem II | 8.97E-04 |
| 60 | GO:0032544: plastid translation | 1.17E-03 |
| 61 | GO:0006002: fructose 6-phosphate metabolic process | 1.17E-03 |
| 62 | GO:0090333: regulation of stomatal closure | 1.32E-03 |
| 63 | GO:0010205: photoinhibition | 1.47E-03 |
| 64 | GO:0006096: glycolytic process | 1.50E-03 |
| 65 | GO:0000272: polysaccharide catabolic process | 1.79E-03 |
| 66 | GO:0005983: starch catabolic process | 1.96E-03 |
| 67 | GO:0006108: malate metabolic process | 2.14E-03 |
| 68 | GO:0009767: photosynthetic electron transport chain | 2.14E-03 |
| 69 | GO:0005986: sucrose biosynthetic process | 2.14E-03 |
| 70 | GO:0019253: reductive pentose-phosphate cycle | 2.32E-03 |
| 71 | GO:0090351: seedling development | 2.50E-03 |
| 72 | GO:0005985: sucrose metabolic process | 2.50E-03 |
| 73 | GO:0048511: rhythmic process | 3.29E-03 |
| 74 | GO:0071215: cellular response to abscisic acid stimulus | 3.71E-03 |
| 75 | GO:0042631: cellular response to water deprivation | 4.37E-03 |
| 76 | GO:0006814: sodium ion transport | 4.83E-03 |
| 77 | GO:0019252: starch biosynthetic process | 5.07E-03 |
| 78 | GO:0008654: phospholipid biosynthetic process | 5.07E-03 |
| 79 | GO:0080167: response to karrikin | 5.85E-03 |
| 80 | GO:0051607: defense response to virus | 6.59E-03 |
| 81 | GO:0048573: photoperiodism, flowering | 7.68E-03 |
| 82 | GO:0016311: dephosphorylation | 7.96E-03 |
| 83 | GO:0010119: regulation of stomatal movement | 9.12E-03 |
| 84 | GO:0009853: photorespiration | 9.73E-03 |
| 85 | GO:0006099: tricarboxylic acid cycle | 1.00E-02 |
| 86 | GO:0042542: response to hydrogen peroxide | 1.13E-02 |
| 87 | GO:0009744: response to sucrose | 1.16E-02 |
| 88 | GO:0009640: photomorphogenesis | 1.16E-02 |
| 89 | GO:0006364: rRNA processing | 1.44E-02 |
| 90 | GO:0009793: embryo development ending in seed dormancy | 1.79E-02 |
| 91 | GO:0009624: response to nematode | 1.84E-02 |
| 92 | GO:0055085: transmembrane transport | 1.95E-02 |
| 93 | GO:0016036: cellular response to phosphate starvation | 2.59E-02 |
| 94 | GO:0007623: circadian rhythm | 2.72E-02 |
| 95 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.81E-02 |
| 96 | GO:0055114: oxidation-reduction process | 3.05E-02 |
| 97 | GO:0010468: regulation of gene expression | 3.08E-02 |
| 98 | GO:0006979: response to oxidative stress | 3.14E-02 |
| 99 | GO:0009658: chloroplast organization | 3.71E-02 |
| 100 | GO:0046686: response to cadmium ion | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 3 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 5 | GO:0031409: pigment binding | 5.19E-21 |
| 6 | GO:0016168: chlorophyll binding | 5.72E-20 |
| 7 | GO:0008266: poly(U) RNA binding | 1.10E-06 |
| 8 | GO:0004332: fructose-bisphosphate aldolase activity | 7.27E-06 |
| 9 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 5.03E-05 |
| 10 | GO:0016041: glutamate synthase (ferredoxin) activity | 5.03E-05 |
| 11 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 5.03E-05 |
| 12 | GO:0010242: oxygen evolving activity | 5.03E-05 |
| 13 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 5.03E-05 |
| 14 | GO:0046872: metal ion binding | 6.72E-05 |
| 15 | GO:0010297: heteropolysaccharide binding | 1.23E-04 |
| 16 | GO:0033201: alpha-1,4-glucan synthase activity | 1.23E-04 |
| 17 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.23E-04 |
| 18 | GO:0004512: inositol-3-phosphate synthase activity | 1.23E-04 |
| 19 | GO:0008967: phosphoglycolate phosphatase activity | 1.23E-04 |
| 20 | GO:0005515: protein binding | 1.62E-04 |
| 21 | GO:0071917: triose-phosphate transmembrane transporter activity | 2.11E-04 |
| 22 | GO:0004324: ferredoxin-NADP+ reductase activity | 2.11E-04 |
| 23 | GO:0004373: glycogen (starch) synthase activity | 2.11E-04 |
| 24 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 3.09E-04 |
| 25 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 3.09E-04 |
| 26 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 3.09E-04 |
| 27 | GO:0016851: magnesium chelatase activity | 3.09E-04 |
| 28 | GO:0009011: starch synthase activity | 4.15E-04 |
| 29 | GO:0008891: glycolate oxidase activity | 4.15E-04 |
| 30 | GO:0015120: phosphoglycerate transmembrane transporter activity | 4.15E-04 |
| 31 | GO:0003959: NADPH dehydrogenase activity | 5.26E-04 |
| 32 | GO:0051538: 3 iron, 4 sulfur cluster binding | 5.26E-04 |
| 33 | GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity | 5.26E-04 |
| 34 | GO:0016615: malate dehydrogenase activity | 6.44E-04 |
| 35 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 7.68E-04 |
| 36 | GO:0030060: L-malate dehydrogenase activity | 7.68E-04 |
| 37 | GO:0005509: calcium ion binding | 1.03E-03 |
| 38 | GO:0071949: FAD binding | 1.32E-03 |
| 39 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 1.47E-03 |
| 40 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.14E-03 |
| 41 | GO:0004089: carbonate dehydratase activity | 2.14E-03 |
| 42 | GO:0031072: heat shock protein binding | 2.14E-03 |
| 43 | GO:0003712: transcription cofactor activity | 2.50E-03 |
| 44 | GO:0022891: substrate-specific transmembrane transporter activity | 3.71E-03 |
| 45 | GO:0008514: organic anion transmembrane transporter activity | 3.93E-03 |
| 46 | GO:0003756: protein disulfide isomerase activity | 3.93E-03 |
| 47 | GO:0050662: coenzyme binding | 4.83E-03 |
| 48 | GO:0010181: FMN binding | 4.83E-03 |
| 49 | GO:0016491: oxidoreductase activity | 8.76E-03 |
| 50 | GO:0003746: translation elongation factor activity | 9.73E-03 |
| 51 | GO:0003993: acid phosphatase activity | 1.00E-02 |
| 52 | GO:0015293: symporter activity | 1.26E-02 |
| 53 | GO:0005198: structural molecule activity | 1.26E-02 |
| 54 | GO:0051082: unfolded protein binding | 1.84E-02 |
| 55 | GO:0019843: rRNA binding | 2.16E-02 |
| 56 | GO:0016829: lyase activity | 2.29E-02 |
| 57 | GO:0015144: carbohydrate transmembrane transporter activity | 2.46E-02 |
| 58 | GO:0015297: antiporter activity | 2.63E-02 |
| 59 | GO:0005351: sugar:proton symporter activity | 2.67E-02 |
| 60 | GO:0042802: identical protein binding | 3.23E-02 |
| 61 | GO:0003824: catalytic activity | 3.42E-02 |
| 62 | GO:0004497: monooxygenase activity | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 3 | GO:0009534: chloroplast thylakoid | 2.74E-49 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.10E-42 |
| 5 | GO:0009579: thylakoid | 1.07E-40 |
| 6 | GO:0009507: chloroplast | 7.28E-32 |
| 7 | GO:0010287: plastoglobule | 4.26E-29 |
| 8 | GO:0009941: chloroplast envelope | 6.47E-23 |
| 9 | GO:0009522: photosystem I | 2.14E-21 |
| 10 | GO:0030076: light-harvesting complex | 1.38E-18 |
| 11 | GO:0009523: photosystem II | 2.24E-16 |
| 12 | GO:0009570: chloroplast stroma | 1.47E-14 |
| 13 | GO:0031977: thylakoid lumen | 3.37E-14 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 2.09E-12 |
| 15 | GO:0009517: PSII associated light-harvesting complex II | 3.98E-12 |
| 16 | GO:0030095: chloroplast photosystem II | 3.35E-11 |
| 17 | GO:0048046: apoplast | 5.00E-10 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 2.02E-08 |
| 19 | GO:0019898: extrinsic component of membrane | 1.16E-07 |
| 20 | GO:0042651: thylakoid membrane | 2.41E-06 |
| 21 | GO:0016020: membrane | 1.91E-05 |
| 22 | GO:0009538: photosystem I reaction center | 1.93E-05 |
| 23 | GO:0009515: granal stacked thylakoid | 5.03E-05 |
| 24 | GO:0009782: photosystem I antenna complex | 5.03E-05 |
| 25 | GO:0043036: starch grain | 1.23E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.23E-04 |
| 27 | GO:0030093: chloroplast photosystem I | 1.23E-04 |
| 28 | GO:0010007: magnesium chelatase complex | 2.11E-04 |
| 29 | GO:0010319: stromule | 4.15E-04 |
| 30 | GO:0016021: integral component of membrane | 4.16E-04 |
| 31 | GO:0055035: plastid thylakoid membrane | 5.26E-04 |
| 32 | GO:0009533: chloroplast stromal thylakoid | 8.97E-04 |
| 33 | GO:0009501: amyloplast | 1.03E-03 |
| 34 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.32E-03 |
| 35 | GO:0005777: peroxisome | 3.01E-03 |
| 36 | GO:0031969: chloroplast membrane | 5.85E-03 |
| 37 | GO:0022626: cytosolic ribosome | 1.47E-02 |
| 38 | GO:0009706: chloroplast inner membrane | 1.84E-02 |
| 39 | GO:0005759: mitochondrial matrix | 2.54E-02 |