GO Enrichment Analysis of Co-expressed Genes with
AT3G47450
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0098586: cellular response to virus | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0033231: carbohydrate export | 0.00E+00 |
| 6 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 7 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 8 | GO:0005997: xylulose metabolic process | 0.00E+00 |
| 9 | GO:0016123: xanthophyll biosynthetic process | 1.20E-07 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 2.36E-07 |
| 11 | GO:0080005: photosystem stoichiometry adjustment | 8.92E-07 |
| 12 | GO:0000256: allantoin catabolic process | 8.92E-07 |
| 13 | GO:0010136: ureide catabolic process | 3.35E-06 |
| 14 | GO:0009658: chloroplast organization | 4.76E-06 |
| 15 | GO:0006145: purine nucleobase catabolic process | 7.85E-06 |
| 16 | GO:0009767: photosynthetic electron transport chain | 8.49E-06 |
| 17 | GO:0016120: carotene biosynthetic process | 2.41E-05 |
| 18 | GO:0048564: photosystem I assembly | 8.88E-05 |
| 19 | GO:0071482: cellular response to light stimulus | 1.12E-04 |
| 20 | GO:0015979: photosynthesis | 1.29E-04 |
| 21 | GO:1902458: positive regulation of stomatal opening | 1.33E-04 |
| 22 | GO:1902334: fructose export from vacuole to cytoplasm | 1.33E-04 |
| 23 | GO:0010362: negative regulation of anion channel activity by blue light | 1.33E-04 |
| 24 | GO:0015755: fructose transport | 1.33E-04 |
| 25 | GO:0019646: aerobic electron transport chain | 1.33E-04 |
| 26 | GO:0031426: polycistronic mRNA processing | 1.33E-04 |
| 27 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.33E-04 |
| 28 | GO:1904964: positive regulation of phytol biosynthetic process | 1.33E-04 |
| 29 | GO:0042371: vitamin K biosynthetic process | 1.33E-04 |
| 30 | GO:0071461: cellular response to redox state | 1.33E-04 |
| 31 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.33E-04 |
| 32 | GO:0000373: Group II intron splicing | 1.37E-04 |
| 33 | GO:0015995: chlorophyll biosynthetic process | 1.71E-04 |
| 34 | GO:0018298: protein-chromophore linkage | 1.98E-04 |
| 35 | GO:0005986: sucrose biosynthetic process | 3.02E-04 |
| 36 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.07E-04 |
| 37 | GO:0046741: transport of virus in host, tissue to tissue | 3.07E-04 |
| 38 | GO:0042853: L-alanine catabolic process | 3.07E-04 |
| 39 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.07E-04 |
| 40 | GO:0034755: iron ion transmembrane transport | 3.07E-04 |
| 41 | GO:0006435: threonyl-tRNA aminoacylation | 3.07E-04 |
| 42 | GO:0080183: response to photooxidative stress | 3.07E-04 |
| 43 | GO:0010207: photosystem II assembly | 3.42E-04 |
| 44 | GO:0006013: mannose metabolic process | 5.06E-04 |
| 45 | GO:0006696: ergosterol biosynthetic process | 5.06E-04 |
| 46 | GO:0071836: nectar secretion | 5.06E-04 |
| 47 | GO:0010371: regulation of gibberellin biosynthetic process | 7.24E-04 |
| 48 | GO:0010239: chloroplast mRNA processing | 7.24E-04 |
| 49 | GO:0043572: plastid fission | 7.24E-04 |
| 50 | GO:2001141: regulation of RNA biosynthetic process | 7.24E-04 |
| 51 | GO:0016117: carotenoid biosynthetic process | 7.98E-04 |
| 52 | GO:0009765: photosynthesis, light harvesting | 9.59E-04 |
| 53 | GO:0009902: chloroplast relocation | 9.59E-04 |
| 54 | GO:0009791: post-embryonic development | 1.06E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.21E-03 |
| 56 | GO:0042549: photosystem II stabilization | 1.49E-03 |
| 57 | GO:0009643: photosynthetic acclimation | 1.49E-03 |
| 58 | GO:0007623: circadian rhythm | 1.71E-03 |
| 59 | GO:0042372: phylloquinone biosynthetic process | 1.78E-03 |
| 60 | GO:0017148: negative regulation of translation | 1.78E-03 |
| 61 | GO:0006401: RNA catabolic process | 2.09E-03 |
| 62 | GO:1900056: negative regulation of leaf senescence | 2.09E-03 |
| 63 | GO:0006402: mRNA catabolic process | 2.42E-03 |
| 64 | GO:2000070: regulation of response to water deprivation | 2.42E-03 |
| 65 | GO:0000105: histidine biosynthetic process | 2.42E-03 |
| 66 | GO:0009657: plastid organization | 2.77E-03 |
| 67 | GO:0032544: plastid translation | 2.77E-03 |
| 68 | GO:0048507: meristem development | 3.13E-03 |
| 69 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.13E-03 |
| 70 | GO:0009638: phototropism | 3.50E-03 |
| 71 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.50E-03 |
| 72 | GO:0031425: chloroplast RNA processing | 3.50E-03 |
| 73 | GO:0006259: DNA metabolic process | 3.89E-03 |
| 74 | GO:0006995: cellular response to nitrogen starvation | 3.89E-03 |
| 75 | GO:0045036: protein targeting to chloroplast | 3.89E-03 |
| 76 | GO:0008285: negative regulation of cell proliferation | 4.30E-03 |
| 77 | GO:0006265: DNA topological change | 4.30E-03 |
| 78 | GO:0006879: cellular iron ion homeostasis | 4.30E-03 |
| 79 | GO:0006352: DNA-templated transcription, initiation | 4.30E-03 |
| 80 | GO:0009750: response to fructose | 4.30E-03 |
| 81 | GO:0006364: rRNA processing | 4.56E-03 |
| 82 | GO:0010020: chloroplast fission | 5.60E-03 |
| 83 | GO:0051302: regulation of cell division | 7.51E-03 |
| 84 | GO:0006418: tRNA aminoacylation for protein translation | 7.51E-03 |
| 85 | GO:0007017: microtubule-based process | 7.51E-03 |
| 86 | GO:0010073: meristem maintenance | 7.51E-03 |
| 87 | GO:0006825: copper ion transport | 7.51E-03 |
| 88 | GO:0051260: protein homooligomerization | 8.02E-03 |
| 89 | GO:0016226: iron-sulfur cluster assembly | 8.55E-03 |
| 90 | GO:0080092: regulation of pollen tube growth | 8.55E-03 |
| 91 | GO:0055114: oxidation-reduction process | 8.76E-03 |
| 92 | GO:0010227: floral organ abscission | 9.08E-03 |
| 93 | GO:0009306: protein secretion | 9.63E-03 |
| 94 | GO:0070417: cellular response to cold | 1.02E-02 |
| 95 | GO:0010118: stomatal movement | 1.08E-02 |
| 96 | GO:0008033: tRNA processing | 1.08E-02 |
| 97 | GO:0006662: glycerol ether metabolic process | 1.13E-02 |
| 98 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.17E-02 |
| 99 | GO:0007059: chromosome segregation | 1.19E-02 |
| 100 | GO:0009646: response to absence of light | 1.19E-02 |
| 101 | GO:0000302: response to reactive oxygen species | 1.32E-02 |
| 102 | GO:0010468: regulation of gene expression | 1.34E-02 |
| 103 | GO:0010286: heat acclimation | 1.57E-02 |
| 104 | GO:0046686: response to cadmium ion | 1.66E-02 |
| 105 | GO:0009816: defense response to bacterium, incompatible interaction | 1.78E-02 |
| 106 | GO:0042128: nitrate assimilation | 1.85E-02 |
| 107 | GO:0048481: plant ovule development | 2.06E-02 |
| 108 | GO:0000160: phosphorelay signal transduction system | 2.14E-02 |
| 109 | GO:0007568: aging | 2.29E-02 |
| 110 | GO:0009910: negative regulation of flower development | 2.29E-02 |
| 111 | GO:0046777: protein autophosphorylation | 2.31E-02 |
| 112 | GO:0009853: photorespiration | 2.44E-02 |
| 113 | GO:0009637: response to blue light | 2.44E-02 |
| 114 | GO:0034599: cellular response to oxidative stress | 2.52E-02 |
| 115 | GO:0045454: cell redox homeostasis | 2.59E-02 |
| 116 | GO:0009640: photomorphogenesis | 2.92E-02 |
| 117 | GO:0010114: response to red light | 2.92E-02 |
| 118 | GO:0009793: embryo development ending in seed dormancy | 2.99E-02 |
| 119 | GO:0009644: response to high light intensity | 3.09E-02 |
| 120 | GO:0006397: mRNA processing | 3.33E-02 |
| 121 | GO:0042538: hyperosmotic salinity response | 3.44E-02 |
| 122 | GO:0006417: regulation of translation | 3.89E-02 |
| 123 | GO:0048316: seed development | 4.17E-02 |
| 124 | GO:0009409: response to cold | 4.68E-02 |
| 125 | GO:0006396: RNA processing | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015284: fructose uniporter activity | 0.00E+00 |
| 2 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 3 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 4 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 6 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 7 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 8 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 9 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.35E-06 |
| 10 | GO:0016851: magnesium chelatase activity | 7.85E-06 |
| 11 | GO:0035671: enone reductase activity | 1.33E-04 |
| 12 | GO:0047958: glycine:2-oxoglutarate aminotransferase activity | 1.33E-04 |
| 13 | GO:0004008: copper-exporting ATPase activity | 1.33E-04 |
| 14 | GO:0051996: squalene synthase activity | 1.33E-04 |
| 15 | GO:0004856: xylulokinase activity | 1.33E-04 |
| 16 | GO:0004830: tryptophan-tRNA ligase activity | 1.33E-04 |
| 17 | GO:0003879: ATP phosphoribosyltransferase activity | 1.33E-04 |
| 18 | GO:0030941: chloroplast targeting sequence binding | 1.33E-04 |
| 19 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.33E-04 |
| 20 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.07E-04 |
| 21 | GO:0004829: threonine-tRNA ligase activity | 3.07E-04 |
| 22 | GO:0005353: fructose transmembrane transporter activity | 3.07E-04 |
| 23 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.07E-04 |
| 24 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.23E-04 |
| 25 | GO:0004180: carboxypeptidase activity | 5.06E-04 |
| 26 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.06E-04 |
| 27 | GO:0046524: sucrose-phosphate synthase activity | 5.06E-04 |
| 28 | GO:0003913: DNA photolyase activity | 5.06E-04 |
| 29 | GO:0032947: protein complex scaffold | 5.06E-04 |
| 30 | GO:0004848: ureidoglycolate hydrolase activity | 5.06E-04 |
| 31 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.06E-04 |
| 32 | GO:0050307: sucrose-phosphate phosphatase activity | 5.06E-04 |
| 33 | GO:0022891: substrate-specific transmembrane transporter activity | 6.80E-04 |
| 34 | GO:0048027: mRNA 5'-UTR binding | 7.24E-04 |
| 35 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 7.24E-04 |
| 36 | GO:0009882: blue light photoreceptor activity | 7.24E-04 |
| 37 | GO:0043023: ribosomal large subunit binding | 7.24E-04 |
| 38 | GO:0008080: N-acetyltransferase activity | 9.22E-04 |
| 39 | GO:0001053: plastid sigma factor activity | 9.59E-04 |
| 40 | GO:0051861: glycolipid binding | 9.59E-04 |
| 41 | GO:0008453: alanine-glyoxylate transaminase activity | 9.59E-04 |
| 42 | GO:0016987: sigma factor activity | 9.59E-04 |
| 43 | GO:0043495: protein anchor | 9.59E-04 |
| 44 | GO:0048038: quinone binding | 1.13E-03 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.21E-03 |
| 46 | GO:0016168: chlorophyll binding | 1.70E-03 |
| 47 | GO:0004559: alpha-mannosidase activity | 1.78E-03 |
| 48 | GO:0016157: sucrose synthase activity | 1.78E-03 |
| 49 | GO:0019899: enzyme binding | 2.09E-03 |
| 50 | GO:0005375: copper ion transmembrane transporter activity | 2.77E-03 |
| 51 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 2.77E-03 |
| 52 | GO:0016491: oxidoreductase activity | 3.46E-03 |
| 53 | GO:0005381: iron ion transmembrane transporter activity | 3.50E-03 |
| 54 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.30E-03 |
| 55 | GO:0000155: phosphorelay sensor kinase activity | 5.15E-03 |
| 56 | GO:0000175: 3'-5'-exoribonuclease activity | 5.15E-03 |
| 57 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 5.15E-03 |
| 58 | GO:0031072: heat shock protein binding | 5.15E-03 |
| 59 | GO:0051119: sugar transmembrane transporter activity | 6.06E-03 |
| 60 | GO:0051536: iron-sulfur cluster binding | 7.01E-03 |
| 61 | GO:0003954: NADH dehydrogenase activity | 7.01E-03 |
| 62 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 8.34E-03 |
| 63 | GO:0003727: single-stranded RNA binding | 9.63E-03 |
| 64 | GO:0004812: aminoacyl-tRNA ligase activity | 1.02E-02 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.02E-02 |
| 66 | GO:0004791: thioredoxin-disulfide reductase activity | 1.19E-02 |
| 67 | GO:0016853: isomerase activity | 1.19E-02 |
| 68 | GO:0010181: FMN binding | 1.19E-02 |
| 69 | GO:0004518: nuclease activity | 1.38E-02 |
| 70 | GO:0042802: identical protein binding | 1.43E-02 |
| 71 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.44E-02 |
| 72 | GO:0008483: transaminase activity | 1.57E-02 |
| 73 | GO:0008237: metallopeptidase activity | 1.57E-02 |
| 74 | GO:0000287: magnesium ion binding | 1.71E-02 |
| 75 | GO:0008236: serine-type peptidase activity | 1.99E-02 |
| 76 | GO:0050897: cobalt ion binding | 2.29E-02 |
| 77 | GO:0043621: protein self-association | 3.09E-02 |
| 78 | GO:0005506: iron ion binding | 3.16E-02 |
| 79 | GO:0005198: structural molecule activity | 3.18E-02 |
| 80 | GO:0009055: electron carrier activity | 3.42E-02 |
| 81 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.62E-02 |
| 82 | GO:0003777: microtubule motor activity | 3.89E-02 |
| 83 | GO:0051082: unfolded protein binding | 4.65E-02 |
| 84 | GO:0015035: protein disulfide oxidoreductase activity | 4.74E-02 |
| 85 | GO:0016746: transferase activity, transferring acyl groups | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.94E-30 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.43E-13 |
| 3 | GO:0009570: chloroplast stroma | 7.52E-09 |
| 4 | GO:0009534: chloroplast thylakoid | 2.41E-06 |
| 5 | GO:0009941: chloroplast envelope | 3.31E-06 |
| 6 | GO:0009523: photosystem II | 7.07E-05 |
| 7 | GO:0009579: thylakoid | 1.68E-04 |
| 8 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.07E-04 |
| 9 | GO:0031977: thylakoid lumen | 3.44E-04 |
| 10 | GO:0010007: magnesium chelatase complex | 5.06E-04 |
| 11 | GO:0033281: TAT protein transport complex | 5.06E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 5.22E-04 |
| 13 | GO:0042651: thylakoid membrane | 5.22E-04 |
| 14 | GO:0031969: chloroplast membrane | 6.85E-04 |
| 15 | GO:0030286: dynein complex | 9.59E-04 |
| 16 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 9.59E-04 |
| 17 | GO:0010287: plastoglobule | 1.07E-03 |
| 18 | GO:0009295: nucleoid | 1.44E-03 |
| 19 | GO:0009707: chloroplast outer membrane | 2.09E-03 |
| 20 | GO:0031359: integral component of chloroplast outer membrane | 2.09E-03 |
| 21 | GO:0009539: photosystem II reaction center | 2.77E-03 |
| 22 | GO:0042644: chloroplast nucleoid | 3.13E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.13E-03 |
| 24 | GO:0016324: apical plasma membrane | 3.89E-03 |
| 25 | GO:0009508: plastid chromosome | 5.15E-03 |
| 26 | GO:0009706: chloroplast inner membrane | 6.48E-03 |
| 27 | GO:0005875: microtubule associated complex | 6.53E-03 |
| 28 | GO:0009543: chloroplast thylakoid lumen | 8.12E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 1.25E-02 |
| 30 | GO:0010319: stromule | 1.57E-02 |
| 31 | GO:0005778: peroxisomal membrane | 1.57E-02 |
| 32 | GO:0009536: plastid | 4.15E-02 |
| 33 | GO:0005747: mitochondrial respiratory chain complex I | 4.17E-02 |